Wall clock time and date at job start Mon Mar 30 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48497 * 109.47432 * 275.37750 * 3 2 1 5 5 H 1.48502 * 109.46940 * 35.37689 * 3 2 1 6 6 H 1.48500 * 109.47154 * 155.37408 * 3 2 1 7 7 C 1.38810 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99568 * 336.03546 * 7 2 1 9 9 N 1.36930 * 120.00215 * 156.02972 * 7 2 1 10 10 C 1.46505 * 120.00235 * 322.08011 * 9 7 2 11 11 N 1.46497 * 109.47158 * 270.00472 * 10 9 7 12 12 C 1.44541 * 120.61753 * 89.99939 * 11 10 9 13 13 C 1.53434 * 111.71680 * 179.97438 * 12 11 10 14 14 S 1.82075 * 103.93590 * 359.97438 * 13 12 11 15 15 C 1.33007 * 120.61004 * 269.71460 * 11 10 9 16 16 O 1.21621 * 125.20136 * 359.97438 * 15 11 10 17 17 C 1.46500 * 120.00356 * 142.07981 * 9 7 2 18 18 C 1.54274 * 110.02706 * 62.27226 * 17 9 7 19 19 C 1.54972 * 104.15626 * 217.13876 * 18 17 9 20 20 C 1.54892 * 102.77957 * 37.88828 * 19 18 17 21 21 C 1.53876 * 110.03181 * 305.05945 * 17 9 7 22 22 H 0.97001 * 120.00158 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46738 * 30.00035 * 10 9 7 24 24 H 1.08998 * 109.47439 * 149.99817 * 10 9 7 25 25 H 1.08998 * 109.03646 * 300.56297 * 12 11 10 26 26 H 1.08999 * 109.04281 * 59.50108 * 12 11 10 27 27 H 1.08991 * 110.53499 * 118.60849 * 13 12 11 28 28 H 1.08998 * 110.52877 * 241.24368 * 13 12 11 29 29 H 1.08996 * 110.01796 * 183.65927 * 17 9 7 30 30 H 1.08994 * 110.48835 * 335.78434 * 18 17 9 31 31 H 1.08997 * 110.48704 * 98.43448 * 18 17 9 32 32 H 1.08998 * 110.71773 * 279.57483 * 19 18 17 33 33 H 1.09001 * 110.91902 * 156.29648 * 19 18 17 34 34 H 1.08995 * 110.48777 * 203.40714 * 20 19 18 35 35 H 1.08997 * 110.59776 * 80.81386 * 20 19 18 36 36 H 1.09003 * 110.02666 * 238.56863 * 21 17 9 37 37 H 1.09002 * 110.03127 * 359.97438 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3840 2.1121 -1.3939 5 1 1.5090 2.6172 0.8106 6 1 3.5999 1.4101 0.5834 7 6 2.0103 -1.2021 -0.0005 8 1 1.5401 -2.0972 0.3790 9 7 3.2910 -1.2530 -0.4823 10 6 3.6645 -0.4589 -1.6555 11 7 3.4373 -1.2457 -2.8702 12 6 2.1627 -1.1983 -3.5503 13 6 2.1492 -2.0964 -4.7942 14 16 3.8167 -2.8269 -4.8258 15 6 4.4019 -2.0125 -3.3708 16 8 5.5160 -2.1352 -2.8987 17 6 4.2879 -2.1015 0.1753 18 6 3.8574 -3.5808 0.0962 19 6 4.2967 -4.1768 1.4576 20 6 3.9974 -3.0246 2.4486 21 6 4.3772 -1.7480 1.6702 22 1 -0.4850 0.8400 -0.0004 23 1 3.0577 0.4459 -1.6899 24 1 4.7181 -0.1875 -1.5901 25 1 1.3817 -1.5280 -2.8652 26 1 1.9592 -0.1712 -3.8532 27 1 1.3924 -2.8746 -4.6958 28 1 1.9724 -1.5037 -5.6917 29 1 5.2607 -1.9699 -0.2984 30 1 2.7767 -3.6578 -0.0228 31 1 4.3693 -4.0838 -0.7242 32 1 5.3608 -4.4129 1.4498 33 1 3.7082 -5.0606 1.7037 34 1 4.6112 -3.1223 3.3439 35 1 2.9398 -3.0103 2.7119 36 1 5.3937 -1.4455 1.9222 37 1 3.6792 -0.9448 1.9063 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153407865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:21 Heat of formation + Delta-G solvation = -24.700637 kcal Electronic energy + Delta-G solvation = -20079.927628 eV Core-core repulsion = 17176.335236 eV Total energy + Delta-G solvation = -2903.592393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03088 -39.28501 -37.69209 -35.81132 -33.60097 -31.59060 -29.44400 -28.87903 -27.69651 -25.68933 -24.27265 -22.03924 -21.45681 -20.69925 -19.12852 -18.77456 -17.78546 -17.28827 -17.12379 -16.67134 -15.97010 -15.55253 -15.22751 -15.16150 -14.93492 -14.65109 -14.37306 -14.06029 -13.78576 -13.33146 -13.00370 -12.93685 -12.55961 -12.28429 -12.05750 -11.90981 -11.86628 -11.82609 -11.73951 -11.37166 -11.30871 -10.95616 -10.65570 -10.16122 -9.21257 -8.95153 -8.22447 -5.62506 0.18120 0.93729 1.19682 1.24729 1.42464 1.49795 2.26138 2.35939 3.01840 3.20252 3.40116 3.86951 3.91789 3.92948 4.03407 4.17774 4.33089 4.56052 4.60062 4.60592 4.67851 4.79088 4.82211 4.85600 4.89781 5.09518 5.11531 5.18187 5.23857 5.45273 5.51755 5.56537 5.91760 6.03905 6.24872 6.62377 6.88752 7.53491 7.97990 8.95442 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014991 B = 0.010125 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.330596 B = 2764.785428 C = 3878.136949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.305 1.305 6 H -0.262 1.262 7 C -0.244 4.244 8 H 0.049 0.951 9 N -0.589 5.589 10 C 0.344 3.656 11 N -0.602 5.602 12 C 0.093 3.907 13 C -0.072 4.072 14 S -0.218 6.218 15 C 0.539 3.461 16 O -0.537 6.537 17 C 0.162 3.838 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.130 4.130 22 H 0.266 0.734 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.147 0.853 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.514 -2.658 -5.542 7.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.234 1.234 6 H -0.187 1.187 7 C -0.373 4.373 8 H 0.067 0.933 9 N -0.311 5.311 10 C 0.133 3.867 11 N -0.341 5.341 12 C -0.031 4.031 13 C -0.221 4.221 14 S 0.007 5.993 15 C 0.217 3.783 16 O -0.419 6.419 17 C 0.056 3.944 18 C -0.162 4.162 19 C -0.150 4.150 20 C -0.148 4.148 21 C -0.169 4.169 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.147 0.853 28 H 0.165 0.835 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.466 -3.373 -6.002 8.791 hybrid contribution -0.610 1.746 0.925 2.068 sum 4.856 -1.627 -5.077 7.211 Atomic orbital electron populations 1.69956 1.07170 1.27492 1.52264 1.25804 0.95308 0.99597 0.98466 0.86435 0.80091 0.82100 0.77970 1.19509 1.23364 1.18659 1.18341 0.87863 0.93351 1.37772 0.93339 1.44964 1.08629 1.51174 1.26338 1.21690 0.98834 0.89774 0.76372 1.49632 1.12409 1.44532 1.27556 1.21547 0.85683 1.02027 0.93882 1.24360 0.93984 1.02304 1.01408 1.87024 1.17279 1.60829 1.34203 1.22147 0.86862 0.81707 0.87551 1.90752 1.21100 1.65748 1.64301 1.21342 0.90559 0.90090 0.92378 1.22609 0.99976 0.96352 0.97270 1.22406 1.01222 0.97556 0.93831 1.22198 1.00587 0.94095 0.97953 1.22459 1.00465 0.98642 0.95306 0.92497 0.90777 0.90822 0.90192 0.88585 0.85267 0.83509 0.92551 0.93399 0.93952 0.90602 0.91181 0.90198 0.93279 0.91600 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.21 13.97 21.65 0.30 -50.90 16 2 C 0.01 0.36 5.27 84.86 0.45 0.80 16 3 Si 0.91 40.72 25.19 68.60 1.73 42.44 16 4 H -0.27 -11.21 6.65 99.48 0.66 -10.55 16 5 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.24 -12.24 8.21 84.03 0.69 -11.55 16 8 H 0.05 2.77 7.07 -2.91 -0.02 2.75 16 9 N -0.59 -26.07 2.26 -685.64 -1.55 -27.62 16 10 C 0.34 14.15 4.94 170.96 0.84 15.00 16 11 N -0.60 -22.37 3.02 -852.10 -2.57 -24.94 16 12 C 0.09 2.85 6.80 86.89 0.59 3.44 16 13 C -0.07 -1.62 7.42 72.13 0.54 -1.09 16 14 S -0.22 -6.57 23.25 -56.49 -1.31 -7.89 16 15 C 0.54 20.62 8.27 130.07 1.08 21.70 16 16 O -0.54 -23.59 16.84 -4.10 -0.07 -23.66 16 17 C 0.16 6.55 3.42 45.72 0.16 6.71 16 18 C -0.12 -4.70 6.43 31.70 0.20 -4.49 16 19 C -0.11 -3.46 6.91 31.92 0.22 -3.24 16 20 C -0.11 -3.55 6.83 31.67 0.22 -3.34 16 21 C -0.13 -4.81 6.25 31.32 0.20 -4.62 16 22 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 23 H 0.07 3.12 3.38 -2.38 -0.01 3.11 16 24 H 0.07 3.01 7.41 -2.39 -0.02 2.99 16 25 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.35 7.38 -2.39 -0.02 2.33 16 30 H 0.05 2.07 6.63 -2.39 -0.02 2.06 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 2.28 7.18 -2.39 -0.02 2.26 16 Total: -1.00 -60.43 304.90 2.72 -57.71 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.01 Total: 15.54 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 5.18 Total: 19.31 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -3.82 Total: -103.46 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.73 Total: 42.44 kcal Atomic # 16 Polarization: -6.57 SS G_CDS: -1.31 Total: -7.89 kcal Total: -60.43 2.72 -57.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153407865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.011 kcal (2) G-P(sol) polarization free energy of solvation -60.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds