Wall clock time and date at job start Mon Mar 30 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47083 * 2 1 4 4 C 1.50704 * 109.47002 * 119.99953 * 2 1 3 5 5 H 1.08005 * 119.99884 * 120.00595 * 4 2 1 6 6 C 1.37873 * 120.00151 * 299.99895 * 4 2 1 7 7 N 1.31510 * 120.00191 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99862 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47055 * 90.00214 * 8 6 4 10 10 H 1.48506 * 109.47169 * 209.99804 * 8 6 4 11 11 H 1.48498 * 109.47480 * 329.99839 * 8 6 4 12 12 N 1.46501 * 109.47048 * 240.00099 * 2 1 3 13 13 C 1.34773 * 120.00245 * 85.27938 * 12 2 1 14 14 O 1.21596 * 119.99830 * 359.71818 * 13 12 2 15 15 N 1.34769 * 120.00135 * 179.72337 * 13 12 2 16 16 C 1.40086 * 120.00052 * 175.53397 * 15 13 12 17 17 C 1.38838 * 120.05757 * 34.65060 * 16 15 13 18 18 C 1.38138 * 119.99478 * 179.97438 * 17 16 15 19 19 C 1.38268 * 120.13275 * 359.97438 * 18 17 16 20 20 C 1.38467 * 120.12467 * 0.02562 * 19 18 17 21 21 F 1.35097 * 119.99999 * 179.97438 * 20 19 18 22 22 C 1.38514 * 120.00065 * 359.67265 * 20 19 18 23 23 F 1.35103 * 120.06822 * 180.31765 * 22 20 19 24 24 H 1.09004 * 109.47083 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47315 * 299.99485 * 1 2 3 26 26 H 1.09000 * 109.47531 * 60.00066 * 1 2 3 27 27 H 0.97003 * 119.99996 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99632 * 264.99331 * 12 2 1 29 29 H 0.97004 * 120.00293 * 355.54304 * 15 13 12 30 30 H 1.07995 * 120.00371 * 0.02562 * 17 16 15 31 31 H 1.08003 * 119.93353 * 180.02562 * 18 17 16 32 32 H 1.08000 * 119.93882 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9758 1.9951 3.9068 11 1 0.8469 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1523 -0.0169 -2.3558 14 8 1.8631 1.1629 -2.4104 15 7 2.6068 -0.6509 -3.4547 16 6 2.6579 0.0234 -4.6816 17 6 2.9537 1.3794 -4.7180 18 6 3.0042 2.0430 -5.9285 19 6 2.7611 1.3593 -7.1055 20 6 2.4656 0.0068 -7.0752 21 9 2.2280 -0.6586 -8.2267 22 6 2.4197 -0.6652 -5.8649 23 9 2.1378 -1.9861 -5.8343 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.9033 -0.5278 4.4376 28 1 2.2490 -1.6318 -1.1526 29 1 2.8985 -1.5742 -3.3963 30 1 3.1452 1.9152 -3.8001 31 1 3.2349 3.0977 -5.9557 32 1 2.8010 1.8812 -8.0501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158704178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:51 Heat of formation + Delta-G solvation = -104.685711 kcal Electronic energy + Delta-G solvation = -20117.098812 eV Core-core repulsion = 16520.364525 eV Total energy + Delta-G solvation = -3596.734287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.53167 -49.61645 -41.69145 -39.60761 -37.08024 -35.80242 -34.43325 -32.03479 -31.32634 -30.07738 -27.22444 -24.87042 -23.92408 -22.92818 -21.69827 -20.14724 -19.46532 -18.64906 -18.43322 -17.85544 -17.42786 -17.28302 -16.62799 -16.30089 -16.04003 -15.94407 -15.74108 -15.28797 -15.14249 -14.89946 -14.12353 -14.02291 -13.78419 -13.38635 -13.24955 -13.01042 -12.76059 -12.70538 -12.14131 -11.64893 -11.55809 -11.28251 -11.15995 -10.87014 -10.04308 -9.79401 -9.29233 -8.37350 -6.44120 -0.12206 -0.04570 1.30595 1.38274 1.45366 1.48236 1.96979 2.27625 2.45537 2.73739 2.99172 3.18157 3.32596 3.64876 3.80068 4.22435 4.25823 4.45086 4.54873 4.69340 4.74644 4.95324 4.98778 5.04752 5.22443 5.28393 5.31475 5.42851 5.57930 5.79677 5.81454 6.21694 6.58056 6.98659 7.20469 7.45690 8.77823 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040098 B = 0.004165 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.114291 B = 6720.849532 C = 7067.576458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.260 3.740 3 H 0.031 0.969 4 C -0.535 4.535 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.934 5.934 8 Si 0.940 3.060 9 H -0.261 1.261 10 H -0.293 1.293 11 H -0.257 1.257 12 N -0.708 5.708 13 C 0.702 3.298 14 O -0.609 6.609 15 N -0.678 5.678 16 C 0.155 3.845 17 C -0.120 4.120 18 C -0.065 4.065 19 C -0.131 4.131 20 C 0.076 3.924 21 F -0.133 7.133 22 C 0.016 3.984 23 F -0.137 7.137 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.271 0.729 28 H 0.406 0.594 29 H 0.421 0.579 30 H 0.142 0.858 31 H 0.178 0.822 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 3.743 -20.987 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.156 3.844 3 H 0.049 0.951 4 C -0.573 4.573 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.767 3.233 9 H -0.187 1.187 10 H -0.220 1.220 11 H -0.182 1.182 12 N -0.360 5.360 13 C 0.402 3.598 14 O -0.489 6.489 15 N -0.326 5.326 16 C 0.058 3.942 17 C -0.141 4.141 18 C -0.083 4.083 19 C -0.151 4.151 20 C 0.055 3.945 21 F -0.112 7.112 22 C -0.007 4.007 23 F -0.115 7.115 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.241 0.759 29 H 0.259 0.741 30 H 0.160 0.840 31 H 0.195 0.805 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.993 4.662 -20.750 21.290 hybrid contribution -0.274 -1.129 0.639 1.326 sum 0.718 3.532 -20.111 20.431 Atomic orbital electron populations 1.22380 0.97896 1.01660 0.99587 1.18715 0.90985 0.93155 0.81595 0.95074 1.21227 1.32530 1.13719 0.89853 0.92535 1.25544 0.96794 0.99412 0.95233 1.69973 1.46594 1.41974 0.98711 0.85995 0.79632 0.80288 0.77419 1.18700 1.22031 1.18167 1.45193 1.68592 1.14126 1.08057 1.15999 0.78179 0.84961 0.80621 1.90848 1.58371 1.15171 1.84497 1.42390 1.67371 1.17213 1.05629 1.17471 1.00576 0.93262 0.82873 1.21511 0.99424 0.92201 1.00942 1.21365 0.95636 1.02006 0.89306 1.21432 1.01221 0.90396 1.02008 1.17593 1.05360 0.91928 0.79587 1.91512 1.92187 1.80929 1.46561 1.17500 1.10927 0.79102 0.93144 1.91472 1.91754 1.31117 1.97188 0.91861 0.93828 0.93462 0.92007 0.75870 0.74113 0.84048 0.80499 0.80230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.64 8.97 71.98 0.65 -5.99 16 2 C 0.26 11.91 2.15 44.24 0.10 12.00 16 3 H 0.03 1.57 6.63 -2.38 -0.02 1.55 16 4 C -0.54 -28.38 9.31 25.60 0.24 -28.14 16 5 H 0.06 3.20 7.98 -2.91 -0.02 3.17 16 6 C 0.03 1.66 5.45 84.65 0.46 2.12 16 7 N -0.93 -55.04 13.96 21.45 0.30 -54.74 16 8 Si 0.94 43.40 24.37 68.60 1.67 45.08 16 9 H -0.26 -11.39 6.87 99.48 0.68 -10.71 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.26 -11.64 6.53 99.48 0.65 -10.99 16 12 N -0.71 -26.74 5.07 -461.41 -2.34 -29.08 16 13 C 0.70 25.33 8.38 179.06 1.50 26.83 16 14 O -0.61 -25.41 13.42 -4.02 -0.05 -25.47 16 15 N -0.68 -19.18 5.24 -317.02 -1.66 -20.84 16 16 C 0.16 4.16 6.31 38.14 0.24 4.40 16 17 C -0.12 -2.96 8.70 22.39 0.19 -2.76 16 18 C -0.06 -1.06 10.04 22.25 0.22 -0.84 16 19 C -0.13 -2.01 10.02 22.33 0.22 -1.79 16 20 C 0.08 1.62 7.30 22.39 0.16 1.79 16 21 F -0.13 -2.99 17.18 44.97 0.77 -2.22 16 22 C 0.02 0.41 7.31 22.51 0.16 0.58 16 23 F -0.14 -3.64 16.86 44.97 0.76 -2.88 16 24 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 25 H 0.04 1.88 3.27 -2.38 -0.01 1.87 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.41 13.39 8.56 -92.71 -0.79 12.60 16 29 H 0.42 9.70 8.67 -92.71 -0.80 8.90 16 30 H 0.14 4.11 6.19 -2.91 -0.02 4.09 16 31 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -65.61 282.56 3.12 -62.49 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.48 Total: 19.47 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.15 Total: 8.19 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -3.70 Total: -104.66 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 1.53 Total: -5.10 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.67 Total: 45.08 kcal Total: -65.61 3.12 -62.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158704178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.194 kcal (2) G-P(sol) polarization free energy of solvation -65.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds