Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00180 * 2 1 4 4 H 1.48501 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47220 * 300.00405 * 3 2 1 6 6 H 1.48498 * 109.46572 * 60.00343 * 3 2 1 7 7 C 1.37882 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00304 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00182 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47230 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46931 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99679 * 179.97438 * 11 10 9 13 13 O 1.21537 * 120.00148 * 359.97438 * 12 11 10 14 14 C 1.47910 * 119.99885 * 179.97438 * 12 11 10 15 15 C 1.38893 * 121.11129 * 354.14973 * 14 12 11 16 16 C 1.39267 * 119.58123 * 180.02562 * 15 14 12 17 17 N 1.30996 * 121.88152 * 359.97373 * 16 15 14 18 18 C 1.33530 * 121.82845 * 0.02562 * 17 16 15 19 19 C 1.40716 * 120.97075 * 179.97438 * 18 17 16 20 20 C 1.36063 * 119.73835 * 180.02562 * 19 18 17 21 21 C 1.39350 * 121.06014 * 359.75963 * 20 19 18 22 22 C 1.36257 * 120.83517 * 0.50696 * 21 20 19 23 23 C 1.40103 * 119.63671 * 359.48397 * 22 21 20 24 24 H 0.97003 * 120.00124 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.46709 * 60.00238 * 9 7 2 26 26 H 1.09002 * 109.47087 * 300.00722 * 9 7 2 27 27 H 1.08999 * 109.47325 * 59.99715 * 10 9 7 28 28 H 1.09004 * 109.46579 * 299.99680 * 10 9 7 29 29 H 0.96997 * 120.00185 * 0.02562 * 11 10 9 30 30 H 1.08000 * 120.20990 * 359.97438 * 15 14 12 31 31 H 1.08000 * 119.06104 * 179.97438 * 16 15 14 32 32 H 1.07994 * 120.13411 * 0.02562 * 19 18 17 33 33 H 1.08007 * 119.46848 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.58704 * 180.28982 * 21 20 19 35 35 H 1.07992 * 120.17697 * 179.75965 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4993 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0018 13 8 3.4019 -6.0981 -0.0023 14 6 1.4470 -7.3790 -0.0018 15 6 0.0637 -7.4090 0.1200 16 6 -0.6003 -8.6332 0.1166 17 7 0.0426 -9.7687 0.0008 18 6 1.3715 -9.8164 -0.1202 19 6 2.0438 -11.0465 -0.2429 20 6 3.3989 -11.0659 -0.3643 21 6 4.1368 -9.8838 -0.3742 22 6 3.5206 -8.6747 -0.2521 23 6 2.1264 -8.6173 -0.1257 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.5426 -4.9308 -0.0019 30 1 -0.4933 -6.4889 0.2175 31 1 -1.6760 -8.6468 0.2123 32 1 1.4864 -11.9715 -0.2409 33 1 3.9104 -12.0125 -0.4578 34 1 5.2111 -9.9267 -0.4765 35 1 4.1032 -7.7655 -0.2573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167686946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -6.706090 kcal Electronic energy + Delta-G solvation = -19078.539308 eV Core-core repulsion = 16040.283266 eV Total energy + Delta-G solvation = -3038.256042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.15045 -40.39311 -38.10095 -36.73514 -34.97309 -34.45538 -31.93024 -31.52419 -30.70129 -27.24291 -25.72653 -24.58028 -23.87510 -22.75687 -21.85606 -19.27842 -18.69182 -18.50222 -18.28433 -16.84447 -16.65110 -16.59671 -16.35206 -15.73459 -15.48848 -15.43099 -14.84980 -14.74409 -14.39875 -14.21051 -14.06304 -13.23582 -12.97911 -12.79761 -12.65553 -12.50874 -12.33241 -12.29842 -11.69339 -11.57388 -11.52527 -11.28905 -10.62228 -10.36508 -10.17655 -9.82216 -9.29780 -8.25102 -6.35125 -0.97720 -0.23837 0.65643 1.40813 1.42357 1.54794 1.71017 1.98686 2.07912 2.41879 3.07929 3.10222 3.27272 3.44164 3.62173 3.68060 3.85139 4.16562 4.20537 4.40646 4.42153 4.45686 4.53494 4.61194 4.77078 4.82046 5.01989 5.06001 5.24888 5.34027 5.43554 5.49811 5.55804 5.56121 5.76931 5.88160 6.14126 6.42395 6.77739 6.77942 7.05209 7.34314 8.86844 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037492 B = 0.003458 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.650864 B = 8095.648784 C = 8816.349557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.703 5.703 12 C 0.551 3.449 13 O -0.565 6.565 14 C -0.092 4.092 15 C -0.125 4.125 16 C 0.128 3.872 17 N -0.472 5.472 18 C 0.101 3.899 19 C -0.105 4.105 20 C -0.092 4.092 21 C -0.112 4.112 22 C -0.132 4.132 23 C -0.087 4.087 24 H 0.266 0.734 25 H 0.011 0.989 26 H 0.012 0.988 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.412 0.588 30 H 0.170 0.830 31 H 0.207 0.793 32 H 0.156 0.844 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -21.145 -0.331 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.017 3.983 11 N -0.353 5.353 12 C 0.339 3.661 13 O -0.446 6.446 14 C -0.103 4.103 15 C -0.146 4.146 16 C -0.044 4.044 17 N -0.181 5.181 18 C -0.020 4.020 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.150 4.150 23 C -0.089 4.089 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.249 0.751 30 H 0.187 0.813 31 H 0.223 0.777 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.169 0.831 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.912 -21.839 -0.342 21.860 hybrid contribution 0.264 2.099 0.022 2.116 sum 1.176 -19.740 -0.320 19.777 Atomic orbital electron populations 1.70050 1.07467 1.27951 1.50992 1.25840 0.95786 1.03009 0.94437 0.85416 0.79003 0.78896 0.77859 1.18983 1.20289 1.20286 1.21483 0.93622 0.91860 1.51501 0.92258 1.19153 0.94232 0.91556 0.96642 1.21345 0.95169 0.81452 1.00384 1.46049 1.11282 1.05336 1.72665 1.18455 0.87016 0.84138 0.76476 1.90557 1.14771 1.87300 1.51979 1.20375 0.95111 0.92339 1.02500 1.22846 0.92673 1.02190 0.96843 1.23568 1.02376 0.85909 0.92582 1.67867 1.08382 1.30781 1.11066 1.19222 0.89607 0.93343 0.99798 1.21113 0.94958 0.96079 1.00143 1.21375 0.93473 0.99705 0.96567 1.21443 1.01895 0.91749 0.97853 1.22020 0.93558 1.01134 0.98283 1.18895 0.95690 0.92685 1.01670 0.92524 0.97058 0.96988 0.92921 0.92985 0.75101 0.81285 0.77665 0.82665 0.81462 0.83100 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.13 13.29 21.45 0.28 -52.85 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.55 -29.84 9.11 25.60 0.23 -29.60 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.05 5.09 29.85 0.15 1.21 16 10 C 0.14 5.80 5.61 86.38 0.48 6.28 16 11 N -0.70 -23.82 5.51 -465.92 -2.57 -26.39 16 12 C 0.55 19.08 7.75 86.80 0.67 19.76 16 13 O -0.56 -22.84 13.53 -3.83 -0.05 -22.89 16 14 C -0.09 -2.67 5.94 -19.68 -0.12 -2.79 16 15 C -0.12 -2.68 9.59 22.67 0.22 -2.46 16 16 C 0.13 2.44 11.14 85.06 0.95 3.39 16 17 N -0.47 -11.33 10.30 -188.74 -1.94 -13.27 16 18 C 0.10 2.63 6.61 40.34 0.27 2.89 16 19 C -0.10 -2.10 9.99 22.37 0.22 -1.88 16 20 C -0.09 -1.55 9.94 22.03 0.22 -1.33 16 21 C -0.11 -2.33 9.96 22.08 0.22 -2.11 16 22 C -0.13 -3.77 9.25 22.26 0.21 -3.56 16 23 C -0.09 -2.54 5.76 -21.09 -0.12 -2.66 16 24 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.41 11.57 6.65 -92.71 -0.62 10.96 16 30 H 0.17 2.67 6.55 -2.91 -0.02 2.65 16 31 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.15 4.85 4.98 -2.92 -0.01 4.83 16 Total: -1.00 -69.17 303.71 2.32 -66.85 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.51 Total: 15.53 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.07 Total: -11.95 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -4.23 Total: -92.51 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.17 2.32 -66.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167686946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.142 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds