Wall clock time and date at job start Mon Mar 30 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99919 * 2 1 4 4 C 1.50698 * 109.47496 * 269.99702 * 3 2 1 5 5 H 1.08006 * 119.99848 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00295 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99783 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99847 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47284 * 90.00406 * 8 6 4 10 10 H 1.48504 * 109.47193 * 210.00204 * 8 6 4 11 11 H 1.48505 * 109.47261 * 330.00038 * 8 6 4 12 12 C 1.34778 * 120.00345 * 179.97438 * 2 1 3 13 13 O 1.21590 * 120.00372 * 180.02562 * 12 2 1 14 14 N 1.34777 * 119.99308 * 0.02562 * 12 2 1 15 15 C 1.40055 * 119.99504 * 184.59075 * 14 12 2 16 16 C 1.38860 * 120.03378 * 324.88696 * 15 14 12 17 17 C 1.38135 * 119.99956 * 180.02562 * 16 15 14 18 18 C 1.38426 * 120.06741 * 359.97438 * 17 16 15 19 19 F 1.35107 * 119.96368 * 180.27342 * 18 17 16 20 20 C 1.38663 * 120.07198 * 0.02562 * 18 17 16 21 21 F 1.35097 * 120.00277 * 180.02562 * 20 18 17 22 22 C 1.38329 * 119.99647 * 359.97438 * 20 18 17 23 23 H 1.08989 * 109.47158 * 270.00202 * 1 2 3 24 24 H 1.09004 * 109.46747 * 30.00556 * 1 2 3 25 25 H 1.09003 * 109.46380 * 149.99741 * 1 2 3 26 26 H 1.09007 * 109.47109 * 29.99890 * 3 2 1 27 27 H 1.09002 * 109.47279 * 149.99866 * 3 2 1 28 28 H 0.97002 * 119.99630 * 179.97438 * 7 6 4 29 29 H 0.96994 * 120.00523 * 4.59302 * 14 12 2 30 30 H 1.08001 * 120.00305 * 0.02562 * 16 15 14 31 31 H 1.08001 * 119.96924 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.03415 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0983 1.0958 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5533 3.6181 -0.6730 8 14 3.4369 3.4176 -3.4339 9 1 2.3065 4.2602 -3.9002 10 1 4.6969 4.2009 -3.4966 11 1 3.5543 2.2206 -4.3049 12 6 2.1390 -1.1672 0.0005 13 8 3.3549 -1.1672 0.0010 14 7 1.4650 -2.3343 0.0005 15 6 2.1619 -3.5453 0.0981 16 6 3.4062 -3.6815 -0.5031 17 6 4.0927 -4.8763 -0.4068 18 6 3.5418 -5.9385 0.2891 19 9 4.2175 -7.1044 0.3867 20 6 2.2995 -5.8057 0.8906 21 9 1.7634 -6.8431 1.5699 22 6 1.6096 -4.6105 0.7960 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3632 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5139 28 1 4.0301 4.4440 -0.8503 29 1 0.4975 -2.3357 -0.0671 30 1 3.8373 -2.8533 -1.0460 31 1 5.0606 -4.9816 -0.8742 32 1 0.6418 -4.5064 1.2638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176540867.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:14 Heat of formation + Delta-G solvation = -79.849544 kcal Electronic energy + Delta-G solvation = -19973.816537 eV Core-core repulsion = 16378.159227 eV Total energy + Delta-G solvation = -3595.657310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.45879 -48.52747 -40.40185 -38.35020 -35.09622 -34.43131 -32.60686 -30.87174 -29.21691 -27.70248 -25.90925 -23.55876 -23.39511 -22.07297 -19.75977 -18.48463 -17.64298 -17.42128 -16.80722 -16.54631 -16.29216 -15.81524 -14.96414 -14.93369 -14.88428 -14.46542 -14.22560 -13.98483 -13.33554 -13.21181 -12.80667 -12.74512 -12.25464 -12.18530 -11.93947 -11.40258 -11.27304 -10.97887 -10.64767 -10.24297 -10.10687 -9.74371 -9.45095 -9.03687 -8.49936 -8.15726 -7.73676 -6.10756 -4.16067 0.92077 0.97035 2.88902 3.26005 3.27420 3.33469 3.37425 3.76202 3.83204 4.24299 4.33772 4.43140 4.57998 4.97586 5.01480 5.23332 5.29401 5.41945 5.65794 5.73683 5.77921 6.00477 6.13478 6.23530 6.45301 6.63492 6.91720 7.22954 7.36736 7.51863 7.85835 8.14412 8.39499 8.83424 9.04947 9.49491 10.97194 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.004132 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.754206 B = 6775.531685 C = 7317.417997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.608 5.608 3 C 0.259 3.741 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.697 3.303 13 O -0.565 6.565 14 N -0.694 5.694 15 C 0.203 3.797 16 C -0.102 4.102 17 C -0.104 4.104 18 C 0.037 3.963 19 F -0.135 7.135 20 C 0.085 3.915 21 F -0.131 7.131 22 C -0.167 4.167 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.405 0.595 30 H 0.163 0.837 31 H 0.148 0.852 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 -14.895 1.802 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C 0.139 3.861 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.399 3.601 13 O -0.441 6.441 14 N -0.344 5.344 15 C 0.105 3.895 16 C -0.123 4.123 17 C -0.123 4.123 18 C 0.016 3.984 19 F -0.114 7.114 20 C 0.065 3.935 21 F -0.110 7.110 22 C -0.189 4.189 23 H 0.066 0.934 24 H 0.099 0.901 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.180 0.820 31 H 0.166 0.834 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.502 -14.618 1.891 15.734 hybrid contribution -0.419 0.019 -0.805 0.908 sum -5.922 -14.599 1.086 15.792 Atomic orbital electron populations 1.21631 0.81456 1.02529 1.00609 1.47532 1.05880 1.06239 1.74670 1.19305 0.92437 0.76661 0.97649 1.21428 1.36830 1.06364 0.92246 0.92423 1.24925 0.95253 0.96340 0.97480 1.69926 1.38214 1.14327 1.30776 0.86487 0.77725 0.78604 0.84531 1.20639 1.21043 1.19899 1.15908 0.85577 0.79984 0.78606 1.90897 1.11226 1.85356 1.56633 1.43017 1.10289 1.03407 1.77676 1.17265 0.92987 0.84950 0.94308 1.21488 0.94268 0.97638 0.98865 1.21015 1.01192 0.91186 0.98930 1.17619 0.91555 0.84072 1.05122 1.91497 1.79289 1.45644 1.94930 1.17212 0.92419 0.85818 0.98096 1.91509 1.85730 1.56161 1.77569 1.20654 1.02981 0.91916 1.03354 0.93424 0.90058 0.93105 0.94611 0.93531 0.92616 0.75700 0.81964 0.83450 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.24 59.85 0.61 1.76 16 2 N -0.61 -12.02 2.86 -188.74 -0.54 -12.55 16 3 C 0.26 6.43 5.16 -5.19 -0.03 6.40 16 4 C -0.53 -14.39 9.39 -34.44 -0.32 -14.71 16 5 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.70 13.64 8.12 -86.92 -0.71 12.94 16 13 O -0.57 -13.28 13.36 5.29 0.07 -13.21 16 14 N -0.69 -9.98 5.22 -14.21 -0.07 -10.05 16 15 C 0.20 2.81 6.30 -83.66 -0.53 2.29 16 16 C -0.10 -1.49 8.69 -39.39 -0.34 -1.84 16 17 C -0.10 -1.31 10.02 -39.55 -0.40 -1.71 16 18 C 0.04 0.49 7.30 -39.36 -0.29 0.20 16 19 F -0.13 -1.82 17.18 2.25 0.04 -1.78 16 20 C 0.09 1.09 7.30 -39.39 -0.29 0.80 16 21 F -0.13 -1.70 17.18 2.25 0.04 -1.66 16 22 C -0.17 -1.96 9.94 -39.34 -0.39 -2.36 16 23 H 0.05 0.57 8.14 -51.94 -0.42 0.15 16 24 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 25 H 0.05 0.54 6.30 -51.93 -0.33 0.22 16 26 H 0.04 0.90 8.07 -51.92 -0.42 0.48 16 27 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.41 4.41 6.52 -40.82 -0.27 4.14 16 30 H 0.16 2.75 6.22 -52.49 -0.33 2.43 16 31 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 290.85 15.07 4.38 4.38 Total: -1.00 -31.45 290.85 -6.10 -37.55 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -2.96 Total: 0.79 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.77 Total: 5.41 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.12 Total: -47.65 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.45 -6.10 -37.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176540867.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.301 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds