Wall clock time and date at job start Mon Mar 30 2020 01:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09008 * 109.46942 * 244.22774 * 3 2 1 5 5 O 1.45200 * 109.47101 * 124.22999 * 3 2 1 6 6 C 1.34701 * 117.00169 * 149.99536 * 5 3 2 7 7 O 1.21471 * 120.00074 * 0.02562 * 6 5 3 8 8 C 1.47769 * 120.00069 * 179.97438 * 6 5 3 9 9 C 1.39960 * 120.03302 * 359.97438 * 8 6 5 10 10 C 1.38317 * 120.35753 * 180.02562 * 9 8 6 11 11 C 1.37755 * 120.41703 * 359.97438 * 10 9 8 12 12 C 1.40757 * 120.05004 * 0.02562 * 11 10 9 13 13 C 1.41439 * 120.17704 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99698 * 24.41558 * 13 12 11 15 15 C 1.39932 * 120.00172 * 204.41934 * 13 12 11 16 16 N 1.30824 * 120.00201 * 17.84828 * 15 13 12 17 17 Si 1.86806 * 119.99927 * 197.84744 * 15 13 12 18 18 H 1.48496 * 109.47243 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46953 * 120.00169 * 17 15 13 20 20 H 1.48506 * 109.46942 * 240.00042 * 17 15 13 21 21 C 1.39059 * 120.03051 * 180.02562 * 8 6 5 22 22 C 1.52995 * 109.47476 * 4.22830 * 3 2 1 23 23 C 1.53009 * 117.50133 * 248.74811 * 22 3 2 24 24 C 1.53005 * 117.50066 * 180.08875 * 22 3 2 25 25 H 4.18741 * 15.03897 * 0.02562 * 4 2 1 26 26 H 1.08008 * 119.82112 * 359.97438 * 9 8 6 27 27 H 1.08005 * 119.79035 * 180.02562 * 10 9 8 28 28 H 1.08001 * 119.97827 * 179.97438 * 11 10 9 29 29 H 0.96997 * 120.00007 * 179.97438 * 16 15 13 30 30 H 1.07997 * 120.20114 * 359.70048 * 21 8 6 31 31 H 1.09002 * 115.55088 * 34.41808 * 22 3 2 32 32 H 1.09001 * 117.49462 * 359.97438 * 23 22 3 33 33 H 1.08994 * 117.49844 * 145.01695 * 23 22 3 34 34 H 1.08999 * 117.49777 * 214.97730 * 24 22 3 35 35 H 1.09000 * 117.49824 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.4477 0.9255 5 8 3.1296 0.7709 -1.1318 6 6 4.3131 1.3971 -0.9845 7 8 4.9247 1.3020 0.0607 8 6 4.8680 2.1990 -2.0948 9 6 4.1648 2.3078 -3.3000 10 6 4.6782 3.0561 -4.3438 11 6 5.8868 3.7032 -4.2096 12 6 6.6087 3.6056 -3.0051 13 6 7.8502 4.2685 -2.8646 14 1 8.0711 5.1352 -3.4700 15 6 8.7922 3.8015 -1.9412 16 7 8.6959 2.5862 -1.4664 17 14 10.1871 4.9132 -1.3865 18 1 10.0717 6.2287 -2.0657 19 1 10.1105 5.1075 0.0838 20 1 11.4877 4.2874 -1.7360 21 6 6.0900 2.8452 -1.9436 22 6 3.1567 -1.4376 -0.1064 23 6 3.8563 -2.0313 1.1181 24 6 4.6719 -1.6501 -0.1200 25 1 -1.0500 -0.0007 -0.0003 26 1 3.2164 1.8040 -3.4159 27 1 4.1276 3.1342 -5.2697 28 1 6.2813 4.2853 -5.0293 29 1 9.3491 2.2624 -0.8266 30 1 6.6343 2.7675 -1.0141 31 1 2.5489 -2.1087 -0.7133 32 1 3.9531 -1.3970 1.9992 33 1 3.7090 -3.0929 1.3164 34 1 5.0608 -2.4612 -0.7356 35 1 5.3048 -0.7652 -0.0536 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179086064.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:50 Heat of formation + Delta-G solvation = 11.972798 kcal Electronic energy + Delta-G solvation = -19605.208941 eV Core-core repulsion = 16535.470125 eV Total energy + Delta-G solvation = -3069.738816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.17358 -37.78805 -36.85218 -35.56175 -33.78273 -33.15359 -30.40353 -29.53832 -27.79262 -25.38218 -23.24878 -22.28135 -21.08389 -20.97053 -19.84966 -18.64281 -17.90453 -16.66789 -16.04760 -15.94591 -15.21833 -14.98536 -14.68185 -13.86654 -13.70639 -13.39560 -12.97684 -12.66999 -12.40728 -12.30838 -11.73093 -11.42020 -11.25051 -11.14530 -10.88253 -10.81487 -10.73828 -10.53911 -10.33509 -10.20572 -10.17320 -9.87723 -9.75197 -9.48559 -9.27074 -7.77800 -7.58571 -6.85845 -4.46376 1.92299 2.29820 2.72098 2.74908 3.05357 3.09384 3.11492 3.47804 3.57117 3.86051 3.88280 4.34505 4.54721 4.81334 4.97691 5.02111 5.09136 5.51043 5.56791 5.68439 5.72177 5.86374 5.99610 6.10849 6.14989 6.38492 6.38924 6.61568 6.89034 6.91622 6.95200 7.14104 7.28007 7.48479 7.65209 7.72533 7.87991 8.07204 8.41440 8.48817 8.73971 8.76207 10.09497 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.021760 B = 0.005127 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.435149 B = 5459.494712 C = 6301.971882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.227 3.773 4 H 0.105 0.895 5 O -0.341 6.341 6 C 0.516 3.484 7 O -0.515 6.515 8 C -0.115 4.115 9 C -0.193 4.193 10 C -0.103 4.103 11 C -0.201 4.201 12 C 0.095 3.905 13 C -0.460 4.460 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.786 5.786 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.088 4.088 22 C -0.173 4.173 23 C -0.166 4.166 24 C -0.173 4.173 25 H 0.223 0.777 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.284 0.716 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -5.604 3.057 10.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.178 4.178 3 C 0.173 3.827 4 H 0.122 0.878 5 O -0.259 6.259 6 C 0.364 3.636 7 O -0.405 6.405 8 C -0.116 4.116 9 C -0.213 4.213 10 C -0.122 4.122 11 C -0.221 4.221 12 C 0.093 3.907 13 C -0.488 4.488 14 H 0.101 0.899 15 C -0.145 4.145 16 N -0.411 5.411 17 Si 0.734 3.266 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.108 4.108 22 C -0.192 4.192 23 C -0.203 4.203 24 C -0.210 4.210 25 H 0.240 0.760 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.135 -5.825 3.541 10.613 hybrid contribution 0.408 0.234 0.321 0.570 sum -7.727 -5.591 3.862 10.290 Atomic orbital electron populations 1.24880 0.95633 0.99668 0.99007 1.22315 0.93259 1.00909 1.01302 1.18553 0.83856 0.89875 0.90443 0.87794 1.86735 1.37741 1.60186 1.41259 1.21918 0.77680 0.76093 0.87936 1.90723 1.59398 1.60884 1.29449 1.18806 0.97590 1.02925 0.92275 1.20582 1.00639 1.06027 0.94046 1.20512 0.96185 0.98335 0.97132 1.21194 0.97481 1.06045 0.97332 1.17542 0.92704 0.90717 0.89771 1.19605 0.98553 1.12194 1.18495 0.89892 1.25956 0.99352 0.94717 0.94492 1.69781 1.33603 1.14553 1.23145 0.86231 0.79929 0.81101 0.79356 1.18291 1.19554 1.19875 1.21657 0.91780 0.97190 1.00126 1.22488 0.96891 0.95698 1.04089 1.22989 1.03750 1.01171 0.92411 1.23279 0.92589 1.04790 1.00325 0.75979 0.87880 0.88501 0.88307 0.90461 0.84601 0.87046 0.88423 0.88509 0.88515 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 19.25 29.55 0.57 -1.51 16 2 C -0.18 -2.63 12.93 -37.12 -0.48 -3.11 16 3 C 0.23 3.76 2.71 -29.52 -0.08 3.68 16 4 H 0.10 1.76 6.92 -51.92 -0.36 1.40 16 5 O -0.34 -6.72 9.06 -40.49 -0.37 -7.09 16 6 C 0.52 11.47 7.12 34.63 0.25 11.72 16 7 O -0.51 -11.97 13.42 -19.24 -0.26 -12.22 16 8 C -0.11 -2.75 5.87 -105.05 -0.62 -3.37 16 9 C -0.19 -4.29 9.62 -38.91 -0.37 -4.66 16 10 C -0.10 -2.23 10.01 -39.73 -0.40 -2.63 16 11 C -0.20 -4.70 9.78 -38.81 -0.38 -5.08 16 12 C 0.10 2.47 5.57 -106.87 -0.60 1.87 16 13 C -0.46 -11.81 9.05 -37.73 -0.34 -12.15 16 14 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 15 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 16 N -0.79 -20.24 10.95 55.55 0.61 -19.63 16 17 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.09 -2.30 8.23 -38.42 -0.32 -2.62 16 22 C -0.17 -2.53 5.36 -90.62 -0.49 -3.02 16 23 C -0.17 -2.12 10.18 -26.69 -0.27 -2.40 16 24 C -0.17 -2.67 9.80 -26.69 -0.26 -2.93 16 25 H 0.22 1.62 7.80 -54.09 -0.42 1.20 16 26 H 0.10 2.09 7.59 -52.48 -0.40 1.69 16 27 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 30 H 0.14 3.77 5.74 -52.49 -0.30 3.47 16 31 H 0.11 1.49 8.10 -51.93 -0.42 1.07 16 32 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.12 2.19 5.37 -51.93 -0.28 1.91 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -28.04 313.14 -8.04 -36.08 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.84 Total: 9.31 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -3.87 Total: -24.48 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.61 Total: -19.63 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.62 Total: -19.31 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.04 -8.04 -36.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179086064.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.051 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds