Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47192 * 121.31245 * 3 2 1 5 5 O 1.45199 * 109.47090 * 241.31736 * 3 2 1 6 6 C 1.34708 * 116.99899 * 269.99443 * 5 3 2 7 7 O 1.21469 * 119.99675 * 0.27924 * 6 5 3 8 8 C 1.47763 * 120.00054 * 179.97438 * 6 5 3 9 9 C 1.39971 * 120.02900 * 359.73552 * 8 6 5 10 10 C 1.38318 * 120.35265 * 179.78526 * 9 8 6 11 11 C 1.37767 * 120.41788 * 0.46413 * 10 9 8 12 12 C 1.40754 * 120.04686 * 359.78643 * 11 10 9 13 13 C 1.41441 * 120.17504 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99860 * 334.92994 * 13 12 11 15 15 C 1.39931 * 119.99983 * 154.92468 * 13 12 11 16 16 N 1.30826 * 120.00240 * 342.58885 * 15 13 12 17 17 Si 1.86813 * 119.99827 * 162.59181 * 15 13 12 18 18 H 1.48499 * 109.47123 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47360 * 119.99985 * 17 15 13 20 20 H 1.48501 * 109.46555 * 239.99968 * 17 15 13 21 21 C 1.39054 * 120.03226 * 180.02562 * 8 6 5 22 22 C 1.53004 * 109.47123 * 1.31735 * 3 2 1 23 23 C 1.52995 * 117.50024 * 128.74747 * 22 3 2 24 24 C 1.52998 * 117.50210 * 60.08371 * 22 3 2 25 25 H 4.18736 * 15.03888 * 0.02562 * 4 2 1 26 26 H 1.07995 * 119.82583 * 359.97438 * 9 8 6 27 27 H 1.07995 * 119.79618 * 180.20959 * 10 9 8 28 28 H 1.07994 * 119.97540 * 179.76589 * 11 10 9 29 29 H 0.97002 * 119.99552 * 179.97438 * 16 15 13 30 30 H 1.07994 * 120.19877 * 359.96046 * 21 8 6 31 31 H 1.09009 * 115.54779 * 274.41465 * 22 3 2 32 32 H 1.08996 * 117.49853 * 359.97438 * 23 22 3 33 33 H 1.09005 * 117.49889 * 145.02667 * 23 22 3 34 34 H 1.08992 * 117.50274 * 214.98553 * 24 22 3 35 35 H 1.08999 * 117.49450 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0090 0.5349 -0.8780 5 8 3.1296 0.6579 1.2010 6 6 3.3330 1.9877 1.1307 7 8 3.1074 2.5827 0.0960 8 6 3.8240 2.7236 2.3142 9 6 4.0727 2.0405 3.5103 10 6 4.5366 2.7220 4.6210 11 6 4.7502 4.0819 4.5660 12 6 4.5008 4.7868 3.3736 13 6 4.7186 6.1831 3.3143 14 1 4.6775 6.7749 4.2169 15 6 4.9874 6.7978 2.0863 16 7 5.3727 6.0773 1.0646 17 14 4.7963 8.6473 1.9059 18 1 4.3517 9.2274 3.1986 19 1 6.0992 9.2441 1.5170 20 1 3.7852 8.9405 0.8585 21 6 4.0336 4.0964 2.2425 22 6 3.1566 -1.4413 -0.0332 23 6 4.1930 -1.7993 -1.1001 24 6 2.7544 -2.3059 -1.2296 25 1 -1.0500 0.0001 0.0007 26 1 3.9044 0.9752 3.5654 27 1 4.7288 2.1854 5.5383 28 1 5.1090 4.6074 5.4386 29 1 5.5587 6.5034 0.2132 30 1 3.8392 4.6283 1.3230 31 1 3.2421 -1.9321 0.9364 32 1 4.5108 -1.0077 -1.7787 33 1 4.9602 -2.5261 -0.8327 34 1 2.5756 -3.3655 -1.0474 35 1 2.1256 -1.8476 -1.9929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179086075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = 9.961647 kcal Electronic energy + Delta-G solvation = -19316.592117 eV Core-core repulsion = 16246.766092 eV Total energy + Delta-G solvation = -3069.826026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01937 -37.95305 -37.12782 -35.56013 -33.77227 -32.91350 -30.40461 -29.53396 -27.78746 -25.37018 -23.16595 -22.52960 -21.34720 -21.01764 -19.87263 -18.35741 -17.90909 -16.89140 -16.08769 -15.66071 -15.31364 -14.88698 -14.72463 -14.26948 -13.75642 -13.38061 -13.13912 -12.68368 -12.44999 -11.99184 -11.73319 -11.69453 -11.24755 -11.13721 -10.89010 -10.76903 -10.70531 -10.53705 -10.47248 -10.27396 -10.17944 -10.12062 -9.74086 -9.49097 -9.26717 -7.76984 -7.57464 -6.84550 -4.45782 1.94030 2.45667 2.75531 2.81425 3.05954 3.10131 3.12014 3.39529 3.55458 3.68500 3.89177 4.36258 4.56786 4.66911 4.80486 4.83043 5.16167 5.42667 5.49011 5.51922 5.66178 5.74806 5.90319 5.96231 6.04241 6.13425 6.38480 6.61531 6.89502 6.92281 6.95775 7.14962 7.28639 7.59634 7.65891 7.72871 7.88736 8.07958 8.42224 8.49875 8.74944 8.76994 10.11065 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.004514 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.603374 B = 6201.238956 C = 6663.137653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.197 4.197 3 C 0.228 3.772 4 H 0.104 0.896 5 O -0.339 6.339 6 C 0.512 3.488 7 O -0.514 6.514 8 C -0.114 4.114 9 C -0.193 4.193 10 C -0.104 4.104 11 C -0.200 4.200 12 C 0.096 3.904 13 C -0.460 4.460 14 H 0.083 0.917 15 C 0.073 3.927 16 N -0.788 5.788 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.088 4.088 22 C -0.148 4.148 23 C -0.172 4.172 24 C -0.166 4.166 25 H 0.221 0.779 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.284 0.716 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -10.966 -3.030 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.173 3.827 4 H 0.122 0.878 5 O -0.257 6.257 6 C 0.359 3.641 7 O -0.403 6.403 8 C -0.115 4.115 9 C -0.212 4.212 10 C -0.122 4.122 11 C -0.220 4.220 12 C 0.093 3.907 13 C -0.489 4.489 14 H 0.101 0.899 15 C -0.145 4.145 16 N -0.412 5.412 17 Si 0.734 3.266 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.108 4.108 22 C -0.166 4.166 23 C -0.209 4.209 24 C -0.203 4.203 25 H 0.238 0.762 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.948 -10.781 -3.613 12.037 hybrid contribution -0.265 0.804 -0.286 0.893 sum -4.213 -9.977 -3.899 11.511 Atomic orbital electron populations 1.24902 0.95767 0.99977 0.98885 1.23115 0.94351 1.00777 1.01478 1.18692 0.83435 0.91728 0.88859 0.87827 1.86753 1.77056 1.23710 1.38172 1.21983 0.73491 0.79569 0.89025 1.90759 1.49114 1.68395 1.32013 1.18809 1.08039 0.93917 0.90785 1.20576 1.09439 0.98286 0.92944 1.20514 1.00375 0.94572 0.96713 1.21200 1.08298 0.93463 0.99064 1.17541 0.89176 0.93480 0.90471 1.19603 1.42577 0.92398 0.94336 0.89874 1.25963 0.92170 1.01169 0.95244 1.69785 1.30369 1.38399 1.02678 0.86223 0.78831 0.81908 0.79596 1.18284 1.19868 1.19572 1.21658 0.97855 0.90593 1.00648 1.22055 1.04747 0.93464 0.96366 1.23140 0.92500 1.03763 1.01462 1.22962 0.98253 0.99579 0.99518 0.76247 0.87822 0.88467 0.88281 0.90465 0.84701 0.86113 0.88288 0.88027 0.88141 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.20 -3.18 12.55 -37.12 -0.47 -3.64 16 3 C 0.23 3.76 2.65 -29.52 -0.08 3.68 16 4 H 0.10 1.78 6.92 -51.93 -0.36 1.42 16 5 O -0.34 -6.70 9.08 -40.51 -0.37 -7.07 16 6 C 0.51 11.84 7.85 34.62 0.27 12.11 16 7 O -0.51 -12.82 15.59 -19.24 -0.30 -13.12 16 8 C -0.11 -2.79 5.87 -105.05 -0.62 -3.41 16 9 C -0.19 -4.29 9.62 -38.90 -0.37 -4.67 16 10 C -0.10 -2.24 10.01 -39.72 -0.40 -2.64 16 11 C -0.20 -4.73 9.78 -38.80 -0.38 -5.11 16 12 C 0.10 2.52 5.57 -106.87 -0.59 1.92 16 13 C -0.46 -11.96 9.05 -37.73 -0.34 -12.30 16 14 H 0.08 2.05 7.90 -52.48 -0.41 1.63 16 15 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 16 N -0.79 -20.65 10.97 55.55 0.61 -20.04 16 17 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.09 -2.35 8.23 -38.43 -0.32 -2.67 16 22 C -0.15 -1.88 5.48 -90.62 -0.50 -2.38 16 23 C -0.17 -1.82 10.18 -26.70 -0.27 -2.09 16 24 C -0.17 -1.66 9.86 -26.69 -0.26 -1.93 16 25 H 0.22 2.04 7.80 -54.09 -0.42 1.62 16 26 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 27 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 30 H 0.14 3.84 5.77 -52.49 -0.30 3.54 16 31 H 0.12 1.48 8.14 -51.92 -0.42 1.06 16 32 H 0.10 1.07 8.05 -51.93 -0.42 0.65 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -29.38 318.67 -8.12 -37.50 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.99 Total: 7.65 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.84 Total: -23.26 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.61 Total: -20.04 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.67 Total: -20.19 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.38 -8.12 -37.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179086075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.463 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds