Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47192 * 121.31245 * 3 2 1 5 5 O 1.45199 * 109.47090 * 241.31736 * 3 2 1 6 6 C 1.34708 * 116.99899 * 269.99443 * 5 3 2 7 7 O 1.21469 * 119.99675 * 0.27924 * 6 5 3 8 8 C 1.47763 * 120.00054 * 179.97438 * 6 5 3 9 9 C 1.39971 * 120.02900 * 359.73552 * 8 6 5 10 10 C 1.38318 * 120.35265 * 179.78526 * 9 8 6 11 11 C 1.37767 * 120.41788 * 0.46413 * 10 9 8 12 12 C 1.40754 * 120.04686 * 359.78643 * 11 10 9 13 13 C 1.41441 * 120.17504 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99860 * 334.92994 * 13 12 11 15 15 C 1.39931 * 119.99983 * 154.92468 * 13 12 11 16 16 N 1.30826 * 120.00240 * 342.58885 * 15 13 12 17 17 Si 1.86813 * 119.99827 * 162.59181 * 15 13 12 18 18 H 1.48499 * 109.47123 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47360 * 119.99985 * 17 15 13 20 20 H 1.48501 * 109.46555 * 239.99968 * 17 15 13 21 21 C 1.39054 * 120.03226 * 180.02562 * 8 6 5 22 22 C 1.53004 * 109.47123 * 1.31735 * 3 2 1 23 23 C 1.52995 * 117.50024 * 128.74747 * 22 3 2 24 24 C 1.52998 * 117.50210 * 60.08371 * 22 3 2 25 25 H 4.18736 * 15.03888 * 0.02562 * 4 2 1 26 26 H 1.07995 * 119.82583 * 359.97438 * 9 8 6 27 27 H 1.07995 * 119.79618 * 180.20959 * 10 9 8 28 28 H 1.07994 * 119.97540 * 179.76589 * 11 10 9 29 29 H 0.97002 * 119.99552 * 179.97438 * 16 15 13 30 30 H 1.07994 * 120.19877 * 359.96046 * 21 8 6 31 31 H 1.09009 * 115.54779 * 274.41465 * 22 3 2 32 32 H 1.08996 * 117.49853 * 359.97438 * 23 22 3 33 33 H 1.09005 * 117.49889 * 145.02667 * 23 22 3 34 34 H 1.08992 * 117.50274 * 214.98553 * 24 22 3 35 35 H 1.08999 * 117.49450 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0090 0.5349 -0.8780 5 8 3.1296 0.6579 1.2010 6 6 3.3330 1.9877 1.1307 7 8 3.1074 2.5827 0.0960 8 6 3.8240 2.7236 2.3142 9 6 4.0727 2.0405 3.5103 10 6 4.5366 2.7220 4.6210 11 6 4.7502 4.0819 4.5660 12 6 4.5008 4.7868 3.3736 13 6 4.7186 6.1831 3.3143 14 1 4.6775 6.7749 4.2169 15 6 4.9874 6.7978 2.0863 16 7 5.3727 6.0773 1.0646 17 14 4.7963 8.6473 1.9059 18 1 4.3517 9.2274 3.1986 19 1 6.0992 9.2441 1.5170 20 1 3.7852 8.9405 0.8585 21 6 4.0336 4.0964 2.2425 22 6 3.1566 -1.4413 -0.0332 23 6 4.1930 -1.7993 -1.1001 24 6 2.7544 -2.3059 -1.2296 25 1 -1.0500 0.0001 0.0007 26 1 3.9044 0.9752 3.5654 27 1 4.7288 2.1854 5.5383 28 1 5.1090 4.6074 5.4386 29 1 5.5587 6.5034 0.2132 30 1 3.8392 4.6283 1.3230 31 1 3.2421 -1.9321 0.9364 32 1 4.5108 -1.0077 -1.7787 33 1 4.9602 -2.5261 -0.8327 34 1 2.5756 -3.3655 -1.0474 35 1 2.1256 -1.8476 -1.9929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179086075.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = -3.695272 kcal Electronic energy + Delta-G solvation = -19317.184326 eV Core-core repulsion = 16246.766092 eV Total energy + Delta-G solvation = -3070.418234 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.104 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.67549 -39.45918 -38.62002 -37.10731 -35.63605 -34.08307 -32.25250 -31.39725 -29.07000 -27.26418 -24.92184 -23.36066 -22.88498 -22.40080 -21.58353 -19.71953 -19.56696 -18.45131 -17.85293 -17.09409 -16.89046 -16.52946 -16.14759 -15.54299 -15.31429 -15.05584 -14.78014 -14.39038 -14.06655 -13.56888 -13.13612 -13.02744 -12.83093 -12.62267 -12.50125 -12.30560 -12.23665 -12.10545 -11.86912 -11.57116 -11.51332 -11.30883 -11.22924 -11.16794 -11.11791 -9.65232 -9.46961 -8.70367 -6.42017 0.07250 0.93879 1.11019 1.37205 1.43708 1.53643 1.67500 1.73693 2.11167 2.18326 2.68482 2.72034 3.27249 3.58774 3.62586 3.80787 3.82666 4.10186 4.14213 4.34569 4.42428 4.59951 4.71061 4.81712 4.87398 4.93704 5.01389 5.05160 5.10440 5.17729 5.25791 5.27182 5.41633 5.78766 5.86268 5.98634 6.20164 6.46849 6.50657 6.72317 6.84017 6.86434 8.27683 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.004514 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.603374 B = 6201.238956 C = 6663.137653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.257 4.257 3 C 0.222 3.778 4 H 0.085 0.915 5 O -0.335 6.335 6 C 0.515 3.485 7 O -0.544 6.544 8 C -0.129 4.129 9 C -0.181 4.181 10 C -0.097 4.097 11 C -0.201 4.201 12 C 0.067 3.933 13 C -0.493 4.493 14 H 0.089 0.911 15 C 0.030 3.970 16 N -0.828 5.828 17 Si 0.984 3.016 18 H -0.250 1.250 19 H -0.264 1.264 20 H -0.271 1.271 21 C -0.122 4.122 22 C -0.168 4.168 23 C -0.170 4.170 24 C -0.144 4.144 25 H 0.262 0.738 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.288 0.712 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 -12.510 -2.008 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.258 4.258 3 C 0.168 3.832 4 H 0.103 0.897 5 O -0.253 6.253 6 C 0.363 3.637 7 O -0.435 6.435 8 C -0.130 4.130 9 C -0.201 4.201 10 C -0.115 4.115 11 C -0.221 4.221 12 C 0.065 3.935 13 C -0.523 4.523 14 H 0.107 0.893 15 C -0.185 4.185 16 N -0.454 5.454 17 Si 0.804 3.196 18 H -0.173 1.173 19 H -0.188 1.188 20 H -0.196 1.196 21 C -0.142 4.142 22 C -0.186 4.186 23 C -0.207 4.207 24 C -0.181 4.181 25 H 0.278 0.722 26 H 0.149 0.851 27 H 0.161 0.839 28 H 0.136 0.864 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.108 0.892 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.653 -12.361 -2.572 13.456 hybrid contribution -0.122 1.083 -0.575 1.232 sum -4.775 -11.278 -3.146 12.645 Atomic orbital electron populations 1.25916 0.96627 0.97452 0.95934 1.23373 0.94989 1.03236 1.04158 1.18974 0.84456 0.93169 0.86591 0.89702 1.86693 1.76728 1.21692 1.40143 1.21830 0.72978 0.80638 0.88233 1.90730 1.50421 1.69386 1.32991 1.19064 1.08034 0.93587 0.92330 1.20958 1.07500 0.99543 0.92055 1.20971 0.98516 0.93920 0.98100 1.21531 1.07361 0.94602 0.98596 1.17898 0.89883 0.94263 0.91474 1.19903 1.44170 0.92923 0.95259 0.89286 1.26873 0.91125 1.05977 0.94495 1.69878 1.31656 1.40506 1.03335 0.85127 0.78963 0.75784 0.79691 1.17270 1.18829 1.19611 1.21460 1.00814 0.91776 1.00180 1.22056 1.07189 0.91580 0.97771 1.23257 0.93395 1.03880 1.00142 1.23074 0.97426 1.00300 0.97305 0.72177 0.85098 0.83918 0.86410 0.90156 0.87749 0.85560 0.89169 0.85980 0.85553 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 19.25 74.32 1.43 -2.20 16 2 C -0.26 -8.18 12.55 31.13 0.39 -7.79 16 3 C 0.22 7.45 2.65 28.79 0.08 7.52 16 4 H 0.09 3.09 6.92 -2.39 -0.02 3.07 16 5 O -0.34 -13.43 9.08 -56.18 -0.51 -13.94 16 6 C 0.52 24.65 7.85 70.34 0.55 25.20 16 7 O -0.54 -28.69 15.59 19.94 0.31 -28.38 16 8 C -0.13 -6.45 5.87 -20.14 -0.12 -6.57 16 9 C -0.18 -7.81 9.62 22.71 0.22 -7.59 16 10 C -0.10 -3.96 10.01 22.18 0.22 -3.74 16 11 C -0.20 -9.33 9.78 22.77 0.22 -9.10 16 12 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 13 C -0.49 -26.39 9.05 23.47 0.21 -26.18 16 14 H 0.09 4.46 7.90 -2.91 -0.02 4.44 16 15 C 0.03 1.55 5.14 85.25 0.44 1.99 16 16 N -0.83 -45.60 10.97 21.82 0.24 -45.36 16 17 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 18 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 21 C -0.12 -6.85 8.23 23.02 0.19 -6.66 16 22 C -0.17 -4.12 5.48 -10.79 -0.06 -4.18 16 23 C -0.17 -3.39 10.18 30.62 0.31 -3.08 16 24 C -0.14 -2.60 9.86 30.62 0.30 -2.30 16 25 H 0.26 3.86 7.80 -4.42 -0.03 3.83 16 26 H 0.13 4.89 7.59 -2.91 -0.02 4.87 16 27 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 28 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.29 14.52 8.30 -92.71 -0.77 13.75 16 30 H 0.10 6.40 5.77 -2.91 -0.02 6.39 16 31 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 32 H 0.09 1.95 8.05 -2.39 -0.02 1.93 16 33 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.30 318.67 7.44 -59.87 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 1.09 Total: 28.06 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.27 Total: -41.18 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.24 Total: -45.36 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.20 Total: -42.32 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -67.30 7.44 -59.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179086075.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.172 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds