Wall clock time and date at job start Mon Mar 30 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46712 * 80.92103 * 3 2 1 5 5 C 1.36864 * 120.00390 * 88.64697 * 4 3 2 6 6 H 1.08002 * 120.00308 * 173.62425 * 5 4 3 7 7 C 1.39051 * 119.99692 * 353.62310 * 5 4 3 8 8 N 1.31361 * 120.00052 * 329.27709 * 7 5 4 9 9 Si 1.86809 * 119.99932 * 149.27396 * 7 5 4 10 10 H 1.48493 * 109.47161 * 94.97247 * 9 7 5 11 11 H 1.48499 * 109.47162 * 214.97608 * 9 7 5 12 12 H 1.48501 * 109.46657 * 334.97381 * 9 7 5 13 13 C 1.34777 * 119.99750 * 268.64161 * 4 3 2 14 14 O 1.21592 * 120.00370 * 5.78381 * 13 4 3 15 15 C 1.47728 * 119.99954 * 185.77850 * 13 4 3 16 16 C 1.39564 * 120.04517 * 47.31863 * 15 13 4 17 17 C 1.37916 * 119.76142 * 179.67935 * 16 15 13 18 18 C 1.38269 * 120.09858 * 0.61773 * 17 16 15 19 19 C 1.38637 * 120.54206 * 359.65899 * 18 17 16 20 20 C 1.37951 * 119.93686 * 0.02661 * 19 18 17 21 21 C 1.51352 * 109.83364 * 179.97438 * 20 19 18 22 22 C 1.54352 * 105.15046 * 342.84206 * 21 20 19 23 23 C 1.51402 * 130.29830 * 180.02562 * 19 18 17 24 24 H 1.08989 * 109.47026 * 320.92162 * 3 2 1 25 25 H 1.08991 * 109.46724 * 200.91759 * 3 2 1 26 26 H 0.97008 * 119.99606 * 180.02562 * 8 7 5 27 27 H 1.08001 * 120.11873 * 359.97438 * 16 15 13 28 28 H 1.08004 * 119.94887 * 180.27621 * 17 16 15 29 29 H 1.08001 * 119.72874 * 179.68228 * 18 17 16 30 30 H 1.08999 * 110.30017 * 101.75692 * 21 20 19 31 31 H 1.08990 * 110.30813 * 223.92156 * 21 20 19 32 32 H 1.09002 * 110.83280 * 268.08751 * 22 21 20 33 33 H 1.09003 * 111.00607 * 144.59197 * 22 21 20 34 34 H 1.09000 * 110.30384 * 316.13581 * 23 19 18 35 35 H 1.09006 * 110.30656 * 78.19184 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 -0.2171 -1.3640 5 6 3.2976 0.8498 -2.1973 6 1 3.7537 0.7008 -3.1649 7 6 2.9146 2.1256 -1.7983 8 7 1.8872 2.2817 -0.9948 9 14 3.8613 3.6174 -2.4048 10 1 3.1893 4.1756 -3.6055 11 1 3.9002 4.6473 -1.3356 12 1 5.2472 3.2152 -2.7553 13 6 3.3475 -1.4680 -1.7981 14 8 3.0704 -2.4221 -1.0970 15 6 3.9596 -1.6802 -3.1258 16 6 5.0767 -0.9357 -3.5072 17 6 5.6474 -1.1432 -4.7455 18 6 5.1067 -2.0765 -5.6106 19 6 3.9936 -2.8165 -5.2426 20 6 3.4171 -2.6233 -4.0043 21 6 2.2257 -3.5427 -3.8434 22 6 1.8747 -4.0024 -5.2745 23 6 3.2304 -3.8809 -6.0022 24 1 2.9716 -0.7969 0.6478 25 1 2.9708 0.9607 0.3669 26 1 1.6199 3.1718 -0.7167 27 1 5.4957 -0.2031 -2.8333 28 1 6.5147 -0.5719 -5.0420 29 1 5.5554 -2.2305 -6.5809 30 1 2.4906 -4.4003 -3.2250 31 1 1.3876 -3.0025 -3.4034 32 1 1.1334 -3.3411 -5.7232 33 1 1.5239 -5.0344 -5.2784 34 1 3.0785 -3.5719 -7.0364 35 1 3.7668 -4.8292 -5.9663 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180900571.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:08 Heat of formation + Delta-G solvation = 13.619184 kcal Electronic energy + Delta-G solvation = -20383.362994 eV Core-core repulsion = 17345.988322 eV Total energy + Delta-G solvation = -3037.374672 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43219 -39.94866 -37.47373 -36.62557 -36.18260 -33.60711 -32.51061 -29.88495 -29.54958 -27.99222 -26.80129 -24.13781 -22.21382 -21.81876 -20.89427 -19.77802 -18.31175 -17.78528 -16.86807 -16.71461 -16.37005 -16.16425 -15.82692 -15.33168 -15.04972 -14.64489 -14.32496 -14.03672 -13.74721 -13.66900 -13.60695 -13.29925 -13.18179 -12.93298 -12.56622 -12.44243 -12.20820 -12.14699 -12.03876 -11.98498 -11.92285 -11.63682 -11.13444 -10.50575 -10.10542 -9.52686 -9.30831 -8.46842 -5.87411 0.25852 0.55174 1.40412 1.53614 1.65566 1.75611 2.04551 2.21793 2.36189 2.82723 3.01579 3.10715 3.56521 3.62926 3.73905 4.12640 4.15338 4.24937 4.28127 4.43224 4.55773 4.70016 4.74108 4.81039 4.83687 4.94465 4.95313 5.08398 5.26263 5.29986 5.33232 5.48847 5.54556 5.63359 5.65456 5.76456 6.17112 6.32580 6.94691 7.03445 7.40187 7.80836 8.58618 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.007731 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.123008 B = 3620.698401 C = 4611.546950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.265 3.735 3 C 0.228 3.772 4 N -0.436 5.436 5 C -0.366 4.366 6 H 0.123 0.877 7 C 0.008 3.992 8 N -0.881 5.881 9 Si 0.980 3.020 10 H -0.286 1.286 11 H -0.280 1.280 12 H -0.247 1.247 13 C 0.487 3.513 14 O -0.625 6.625 15 C -0.107 4.107 16 C -0.091 4.091 17 C -0.127 4.127 18 C -0.096 4.096 19 C -0.114 4.114 20 C -0.089 4.089 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.070 4.070 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.276 0.724 27 H 0.135 0.865 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.455 -5.048 -9.888 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C -0.052 4.052 3 C 0.101 3.899 4 N -0.153 5.153 5 C -0.492 4.492 6 H 0.141 0.859 7 C -0.196 4.196 8 N -0.518 5.518 9 Si 0.803 3.197 10 H -0.212 1.212 11 H -0.205 1.205 12 H -0.170 1.170 13 C 0.279 3.721 14 O -0.513 6.513 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.144 4.144 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.151 4.151 23 C -0.106 4.106 24 H 0.127 0.873 25 H 0.147 0.853 26 H 0.086 0.914 27 H 0.153 0.847 28 H 0.176 0.824 29 H 0.173 0.827 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.526 -5.324 -9.417 13.179 hybrid contribution 0.073 1.188 0.484 1.285 sum 7.599 -4.136 -8.933 12.436 Atomic orbital electron populations 1.80809 1.14707 1.13976 1.09983 1.29664 0.95817 0.88605 0.91153 1.18873 0.80332 1.04539 0.86138 1.43882 1.54785 1.05831 1.10847 1.20230 1.41828 0.84697 1.02454 0.85947 1.26024 0.94805 1.01594 0.97158 1.70097 1.20720 1.25189 1.35813 0.85134 0.79981 0.77060 0.77515 1.21203 1.20492 1.17019 1.18706 0.83522 0.82324 0.87568 1.90605 1.59844 1.41741 1.59133 1.19494 0.98569 0.99027 0.93894 1.21429 0.94344 0.97355 0.97864 1.21325 1.01014 0.99052 0.93030 1.21080 0.94673 0.94939 1.00685 1.20917 0.96908 0.98968 0.94662 1.20749 0.97790 0.95705 0.94775 1.21003 0.94330 0.97311 0.99234 1.22331 0.97648 1.02659 0.92459 1.21059 0.93670 0.96736 0.99154 0.87311 0.85268 0.91406 0.84747 0.82438 0.82658 0.90800 0.94602 0.91221 0.88319 0.88518 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -27.59 18.54 20.01 0.37 -27.22 16 2 C 0.26 13.41 13.53 89.44 1.21 14.62 16 3 C 0.23 10.28 5.16 84.57 0.44 10.72 16 4 N -0.44 -20.88 2.58 -648.86 -1.67 -22.56 16 5 C -0.37 -17.21 8.35 84.10 0.70 -16.51 16 6 H 0.12 5.54 5.04 -2.91 -0.01 5.53 16 7 C 0.01 0.39 4.76 84.96 0.40 0.79 16 8 N -0.88 -43.68 9.42 21.68 0.20 -43.47 16 9 Si 0.98 36.27 29.65 68.60 2.03 38.31 16 10 H -0.29 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 12 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 13 C 0.49 23.58 7.01 86.75 0.61 24.18 16 14 O -0.62 -33.00 16.23 -4.01 -0.07 -33.07 16 15 C -0.11 -4.48 5.04 -20.06 -0.10 -4.58 16 16 C -0.09 -3.20 7.44 22.51 0.17 -3.03 16 17 C -0.13 -3.41 10.03 22.20 0.22 -3.19 16 18 C -0.10 -2.39 10.03 22.37 0.22 -2.17 16 19 C -0.11 -3.33 6.13 -19.61 -0.12 -3.45 16 20 C -0.09 -3.36 6.00 -19.34 -0.12 -3.48 16 21 C -0.08 -2.91 6.10 30.51 0.19 -2.72 16 22 C -0.11 -2.82 7.08 31.51 0.22 -2.60 16 23 C -0.07 -1.50 6.77 30.53 0.21 -1.29 16 24 H 0.11 4.48 7.47 -2.39 -0.02 4.46 16 25 H 0.13 5.57 6.43 -2.39 -0.02 5.56 16 26 H 0.28 13.12 8.31 -92.70 -0.77 12.35 16 27 H 0.13 4.67 7.15 -2.91 -0.02 4.65 16 28 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 29 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -65.19 300.55 6.24 -58.94 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.12 Total: 21.75 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.25 Total: 7.31 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -1.10 Total: -93.25 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.07 Total: -33.07 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.31 kcal Total: -65.19 6.24 -58.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180900571.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.562 kcal (2) G-P(sol) polarization free energy of solvation -65.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds