Wall clock time and date at job start Mon Mar 30 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39637 * 120.14621 * 218.75305 * 3 2 1 5 5 C 1.37945 * 119.84342 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.15159 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.84773 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46901 * 90.00319 * 7 6 5 9 9 C 1.34781 * 119.99757 * 269.99613 * 8 7 6 10 10 O 1.21683 * 120.00192 * 4.93420 * 9 8 7 11 11 C 1.46380 * 119.99434 * 184.92414 * 9 8 7 12 12 H 1.07997 * 120.00569 * 5.08872 * 11 9 8 13 13 C 1.40048 * 119.99638 * 185.07667 * 11 9 8 14 14 N 1.30669 * 120.00277 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00033 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47266 * 59.99894 * 15 13 11 17 17 H 1.48503 * 109.47424 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47117 * 300.00078 * 15 13 11 19 19 C 1.46499 * 120.00028 * 90.00296 * 8 7 6 20 20 C 1.53001 * 117.49813 * 2.54870 * 19 8 7 21 21 C 1.52999 * 117.49970 * 293.92551 * 19 8 7 22 22 C 1.38356 * 120.30432 * 0.23847 * 6 5 4 23 23 C 1.37951 * 120.15457 * 359.48129 * 22 6 5 24 24 H 1.08003 * 120.07787 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.92695 * 180.02562 * 5 4 3 26 26 H 1.08998 * 109.47308 * 210.00602 * 7 6 5 27 27 H 1.09000 * 109.46921 * 330.00557 * 7 6 5 28 28 H 0.97006 * 120.00598 * 179.97438 * 14 13 11 29 29 H 1.09005 * 115.55057 * 148.25507 * 19 8 7 30 30 H 1.08999 * 117.49649 * 0.02562 * 20 19 8 31 31 H 1.08997 * 117.49951 * 145.02658 * 20 19 8 32 32 H 1.09000 * 117.50121 * 214.98213 * 21 19 8 33 33 H 1.09001 * 117.49505 * 359.97438 * 21 19 8 34 34 H 1.08006 * 119.92287 * 179.71747 * 22 6 5 35 35 H 1.07996 * 120.08074 * 180.25915 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.9426 0.7559 5 6 4.6483 0.9379 0.7509 6 6 5.3374 0.0030 -0.0012 7 6 6.8444 0.0044 -0.0021 8 7 7.3341 -0.8603 1.0743 9 6 7.5590 -0.3481 2.3006 10 8 7.2710 0.8100 2.5384 11 6 8.1496 -1.1851 3.3462 12 1 8.4807 -2.1864 3.1137 13 6 8.2854 -0.6873 4.6482 14 7 7.8845 0.5241 4.9296 15 14 9.0396 -1.7550 5.9824 16 1 10.4238 -2.1278 5.5947 17 1 9.0693 -1.0015 7.2618 18 1 8.2248 -2.9850 6.1518 19 6 7.5795 -2.2816 0.8179 20 6 7.3625 -2.7898 -0.6089 21 6 6.3695 -3.1603 0.4946 22 6 4.6492 -0.9297 -0.7567 23 6 3.2698 -0.9401 -0.7564 24 1 2.7322 1.6732 1.3430 25 1 5.1917 1.6656 1.3353 26 1 7.2076 -0.3671 -0.9603 27 1 7.2068 1.0204 0.1547 28 1 7.9782 0.8689 5.8315 29 1 8.3879 -2.7308 1.3950 30 1 7.0376 -2.0664 -1.3567 31 1 8.0281 -3.5734 -0.9707 32 1 6.3819 -4.1877 0.8586 33 1 5.3908 -2.6810 0.4731 34 1 5.1934 -1.6538 -1.3450 35 1 2.7339 -1.6714 -1.3433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185473439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:09 Heat of formation + Delta-G solvation = 52.279340 kcal Electronic energy + Delta-G solvation = -19971.414360 eV Core-core repulsion = 16935.716118 eV Total energy + Delta-G solvation = -3035.698242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70351 -38.11136 -36.31517 -35.97301 -33.14605 -32.32246 -31.04003 -30.76118 -27.39430 -25.38365 -22.63960 -22.42152 -21.85777 -21.37325 -19.19079 -18.72919 -17.00622 -15.79106 -15.56928 -15.26334 -14.97093 -14.61391 -14.26802 -13.92309 -13.70237 -13.36331 -13.20723 -12.78240 -12.76381 -12.42635 -12.26636 -11.73063 -11.62296 -11.31705 -11.19651 -11.02971 -10.94589 -10.58942 -10.35687 -10.26723 -10.21689 -9.93765 -8.90321 -8.79518 -8.62298 -7.68229 -7.30986 -6.27421 -4.71363 0.91996 1.55019 2.71113 3.04527 3.11458 3.17554 3.18522 3.91339 3.99146 4.08910 4.26421 4.42545 4.52068 4.95273 5.01111 5.16619 5.31305 5.41855 5.45079 5.48597 5.56772 5.76988 5.81923 5.94058 5.98497 6.17389 6.24901 6.31795 6.41189 6.44522 6.53583 6.58270 6.87421 7.06255 7.37829 7.49350 7.52902 8.01640 8.23719 8.95286 9.27893 10.46735 10.65632 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.005697 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.822566 B = 4914.034552 C = 5565.145618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.265 3.735 3 C -0.047 4.047 4 C -0.072 4.072 5 C -0.089 4.089 6 C -0.054 4.054 7 C 0.151 3.849 8 N -0.608 5.608 9 C 0.562 3.438 10 O -0.569 6.569 11 C -0.538 4.538 12 H 0.071 0.929 13 C 0.089 3.911 14 N -0.766 5.766 15 Si 0.905 3.095 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.117 3.883 20 C -0.209 4.209 21 C -0.211 4.211 22 C -0.120 4.120 23 C -0.078 4.078 24 H 0.128 0.872 25 H 0.145 0.855 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.269 0.731 29 H 0.126 0.874 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -4.372 -9.998 11.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.049 4.049 3 C -0.051 4.051 4 C -0.093 4.093 5 C -0.108 4.108 6 C -0.057 4.057 7 C 0.027 3.973 8 N -0.343 5.343 9 C 0.369 3.631 10 O -0.452 6.452 11 C -0.575 4.575 12 H 0.089 0.911 13 C -0.131 4.131 14 N -0.395 5.395 15 Si 0.730 3.270 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.193 1.193 19 C 0.010 3.990 20 C -0.247 4.247 21 C -0.250 4.250 22 C -0.139 4.139 23 C -0.099 4.099 24 H 0.146 0.854 25 H 0.163 0.837 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.144 0.856 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.743 -3.532 -9.687 10.969 hybrid contribution 0.649 -0.791 0.705 1.242 sum -3.093 -4.323 -8.983 10.438 Atomic orbital electron populations 1.81204 1.12206 1.08688 1.09181 1.25856 0.92785 0.93175 0.93103 1.15981 0.83896 1.00988 1.04196 1.21196 0.94542 0.96882 0.96651 1.21319 0.93014 0.99183 0.97256 1.20881 0.98029 0.93266 0.93542 1.20157 0.87723 0.97625 0.91822 1.47727 1.69747 1.05884 1.10967 1.18220 0.78260 0.87273 0.79395 1.90581 1.56680 1.18656 1.79242 1.20925 1.42419 1.00972 0.93155 0.91105 1.25697 0.93578 0.94663 0.99169 1.69976 1.34703 1.14585 1.20223 0.86469 0.80154 0.80520 0.79889 1.19225 1.20559 1.19258 1.21474 0.98330 0.83419 0.95773 1.23356 1.04378 1.03870 0.93075 1.23537 0.96766 1.01126 1.03607 1.21089 0.93371 0.99060 1.00366 1.21019 0.94245 0.96952 0.97640 0.85409 0.83713 0.91049 0.89490 0.91980 0.85635 0.88830 0.88885 0.89264 0.88420 0.85057 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.96 18.54 41.84 0.78 -6.19 16 2 C 0.27 3.79 15.33 -22.47 -0.34 3.45 16 3 C -0.05 -0.63 5.73 -106.93 -0.61 -1.25 16 4 C -0.07 -1.03 9.76 -39.17 -0.38 -1.42 16 5 C -0.09 -1.46 9.54 -39.64 -0.38 -1.84 16 6 C -0.05 -0.85 5.27 -104.53 -0.55 -1.40 16 7 C 0.15 2.54 5.05 -5.19 -0.03 2.51 16 8 N -0.61 -12.27 2.78 -169.12 -0.47 -12.74 16 9 C 0.56 14.52 7.59 -12.98 -0.10 14.42 16 10 O -0.57 -16.42 13.84 5.20 0.07 -16.35 16 11 C -0.54 -14.12 8.85 -35.63 -0.32 -14.44 16 12 H 0.07 1.70 5.99 -52.49 -0.31 1.39 16 13 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 14 N -0.77 -21.68 11.84 55.55 0.66 -21.02 16 15 Si 0.91 19.26 29.56 -169.99 -5.02 14.23 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 C 0.12 1.98 5.88 -67.93 -0.40 1.58 16 20 C -0.21 -2.64 9.20 -26.73 -0.25 -2.89 16 21 C -0.21 -3.05 9.74 -26.73 -0.26 -3.31 16 22 C -0.12 -1.55 6.99 -39.64 -0.28 -1.82 16 23 C -0.08 -0.95 9.76 -39.17 -0.38 -1.33 16 24 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 25 H 0.15 2.69 7.36 -52.48 -0.39 2.31 16 26 H 0.07 0.98 5.94 -51.93 -0.31 0.67 16 27 H 0.09 1.60 7.43 -51.93 -0.39 1.22 16 28 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 29 H 0.13 2.20 6.39 -51.93 -0.33 1.87 16 30 H 0.09 1.09 4.56 -51.93 -0.24 0.85 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.48 5.38 -51.93 -0.28 1.20 16 34 H 0.13 1.45 5.45 -52.48 -0.29 1.17 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 301.26 15.07 4.54 4.54 Total: -1.00 -30.94 301.26 -7.17 -38.11 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.35 Total: 4.91 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -4.37 Total: -5.49 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.96 Total: -39.95 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.07 Total: -16.35 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.94 -7.17 -38.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185473439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.392 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds