Wall clock time and date at job start Mon Mar 30 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39637 * 120.14621 * 218.75305 * 3 2 1 5 5 C 1.37945 * 119.84342 * 180.02562 * 4 3 2 6 6 C 1.38367 * 120.15159 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.84773 * 179.97438 * 6 5 4 8 8 N 1.46497 * 109.46901 * 90.00319 * 7 6 5 9 9 C 1.34781 * 119.99757 * 269.99613 * 8 7 6 10 10 O 1.21683 * 120.00192 * 4.93420 * 9 8 7 11 11 C 1.46380 * 119.99434 * 184.92414 * 9 8 7 12 12 H 1.07997 * 120.00569 * 5.08872 * 11 9 8 13 13 C 1.40048 * 119.99638 * 185.07667 * 11 9 8 14 14 N 1.30669 * 120.00277 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00033 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47266 * 59.99894 * 15 13 11 17 17 H 1.48503 * 109.47424 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47117 * 300.00078 * 15 13 11 19 19 C 1.46499 * 120.00028 * 90.00296 * 8 7 6 20 20 C 1.53001 * 117.49813 * 2.54870 * 19 8 7 21 21 C 1.52999 * 117.49970 * 293.92551 * 19 8 7 22 22 C 1.38356 * 120.30432 * 0.23847 * 6 5 4 23 23 C 1.37951 * 120.15457 * 359.48129 * 22 6 5 24 24 H 1.08003 * 120.07787 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.92695 * 180.02562 * 5 4 3 26 26 H 1.08998 * 109.47308 * 210.00602 * 7 6 5 27 27 H 1.09000 * 109.46921 * 330.00557 * 7 6 5 28 28 H 0.97006 * 120.00598 * 179.97438 * 14 13 11 29 29 H 1.09005 * 115.55057 * 148.25507 * 19 8 7 30 30 H 1.08999 * 117.49649 * 0.02562 * 20 19 8 31 31 H 1.08997 * 117.49951 * 145.02658 * 20 19 8 32 32 H 1.09000 * 117.50121 * 214.98213 * 21 19 8 33 33 H 1.09001 * 117.49505 * 359.97438 * 21 19 8 34 34 H 1.08006 * 119.92287 * 179.71747 * 22 6 5 35 35 H 1.07996 * 120.08074 * 180.25915 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.9426 0.7559 5 6 4.6483 0.9379 0.7509 6 6 5.3374 0.0030 -0.0012 7 6 6.8444 0.0044 -0.0021 8 7 7.3341 -0.8603 1.0743 9 6 7.5590 -0.3481 2.3006 10 8 7.2710 0.8100 2.5384 11 6 8.1496 -1.1851 3.3462 12 1 8.4807 -2.1864 3.1137 13 6 8.2854 -0.6873 4.6482 14 7 7.8845 0.5241 4.9296 15 14 9.0396 -1.7550 5.9824 16 1 10.4238 -2.1278 5.5947 17 1 9.0693 -1.0015 7.2618 18 1 8.2248 -2.9850 6.1518 19 6 7.5795 -2.2816 0.8179 20 6 7.3625 -2.7898 -0.6089 21 6 6.3695 -3.1603 0.4946 22 6 4.6492 -0.9297 -0.7567 23 6 3.2698 -0.9401 -0.7564 24 1 2.7322 1.6732 1.3430 25 1 5.1917 1.6656 1.3353 26 1 7.2076 -0.3671 -0.9603 27 1 7.2068 1.0204 0.1547 28 1 7.9782 0.8689 5.8315 29 1 8.3879 -2.7308 1.3950 30 1 7.0376 -2.0664 -1.3567 31 1 8.0281 -3.5734 -0.9707 32 1 6.3819 -4.1877 0.8586 33 1 5.3908 -2.6810 0.4731 34 1 5.1934 -1.6538 -1.3450 35 1 2.7339 -1.6714 -1.3433 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185473439.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:08 Heat of formation + Delta-G solvation = 34.487872 kcal Electronic energy + Delta-G solvation = -19972.185856 eV Core-core repulsion = 16935.716118 eV Total energy + Delta-G solvation = -3036.469738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96411 -39.53171 -37.72911 -37.40160 -34.80562 -34.01046 -32.40251 -31.95594 -29.05762 -27.00856 -23.79228 -23.60497 -23.11592 -22.76267 -20.82402 -19.89687 -18.54771 -17.65798 -16.87737 -16.55652 -16.32069 -16.11543 -15.56225 -15.12821 -15.05253 -14.72328 -14.51154 -14.30591 -13.98240 -13.85927 -13.64635 -13.25105 -12.97210 -12.81960 -12.75846 -12.50392 -12.17004 -12.09770 -12.01647 -11.70299 -11.51620 -11.17911 -10.85941 -9.94051 -9.89423 -9.54348 -8.87197 -8.23035 -6.75172 -0.23399 0.43839 1.42050 1.44070 1.54805 1.55650 1.86902 2.27077 2.50669 2.72475 2.83553 3.06901 3.17577 3.66849 3.85327 3.97759 3.99712 4.15570 4.30033 4.30302 4.38696 4.46995 4.62774 4.79575 4.85211 5.00874 5.08738 5.10806 5.26183 5.28711 5.35201 5.43123 5.44926 5.68380 5.87226 5.93674 6.20308 6.38503 6.45796 6.95203 7.47685 8.54021 8.73274 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.005697 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.822566 B = 4914.034552 C = 5565.145618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.285 3.715 3 C -0.045 4.045 4 C -0.073 4.073 5 C -0.114 4.114 6 C -0.066 4.066 7 C 0.151 3.849 8 N -0.607 5.607 9 C 0.547 3.453 10 O -0.615 6.615 11 C -0.565 4.565 12 H 0.087 0.913 13 C 0.034 3.966 14 N -0.820 5.820 15 Si 0.985 3.015 16 H -0.255 1.255 17 H -0.279 1.279 18 H -0.257 1.257 19 C 0.068 3.932 20 C -0.166 4.166 21 C -0.204 4.204 22 C -0.108 4.108 23 C -0.061 4.061 24 H 0.134 0.866 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 -7.549 -11.938 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.029 4.029 3 C -0.049 4.049 4 C -0.094 4.094 5 C -0.133 4.133 6 C -0.068 4.068 7 C 0.028 3.972 8 N -0.341 5.341 9 C 0.353 3.647 10 O -0.501 6.501 11 C -0.601 4.601 12 H 0.105 0.895 13 C -0.181 4.181 14 N -0.450 5.450 15 Si 0.805 3.195 16 H -0.179 1.179 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.037 4.037 20 C -0.203 4.203 21 C -0.243 4.243 22 C -0.126 4.126 23 C -0.081 4.081 24 H 0.152 0.848 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.178 0.822 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.958 -6.753 -11.685 14.065 hybrid contribution 0.694 0.196 1.197 1.398 sum -3.263 -6.557 -10.488 12.792 Atomic orbital electron populations 1.81234 1.12974 1.09616 1.10135 1.25791 0.92586 0.92324 0.92247 1.15993 0.83474 1.01117 1.04289 1.21199 0.93707 0.97514 0.96973 1.21098 0.93920 0.99804 0.98457 1.20788 0.97154 0.94253 0.94612 1.20264 0.88936 0.95806 0.92231 1.47365 1.68975 1.07760 1.09953 1.18459 0.78042 0.86781 0.81379 1.90544 1.58211 1.20434 1.80924 1.21446 1.42780 1.01883 0.93989 0.89491 1.26818 0.93567 0.95867 1.01861 1.70154 1.36875 1.17048 1.20939 0.85254 0.79604 0.78456 0.76173 1.17890 1.20357 1.18102 1.21621 1.00206 0.81772 1.00079 1.23464 1.02599 1.03456 0.90830 1.23553 0.95676 1.00950 1.04094 1.21277 0.93703 0.98210 0.99390 1.21400 0.93983 0.96372 0.96349 0.84767 0.87462 0.87249 0.92565 0.91884 0.86996 0.87213 0.86097 0.87850 0.88961 0.82158 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.04 18.54 19.00 0.35 -13.68 16 2 C 0.28 7.58 15.33 88.33 1.35 8.94 16 3 C -0.04 -1.12 5.73 -21.36 -0.12 -1.25 16 4 C -0.07 -2.12 9.76 22.54 0.22 -1.90 16 5 C -0.11 -3.92 9.54 22.23 0.21 -3.71 16 6 C -0.07 -2.00 5.27 -19.81 -0.10 -2.11 16 7 C 0.15 5.08 5.05 85.63 0.43 5.51 16 8 N -0.61 -24.74 2.78 -807.20 -2.25 -26.99 16 9 C 0.55 29.60 7.59 86.36 0.66 30.25 16 10 O -0.62 -37.98 13.84 -4.29 -0.06 -38.04 16 11 C -0.56 -30.47 8.85 24.83 0.22 -30.25 16 12 H 0.09 4.22 5.99 -2.91 -0.02 4.21 16 13 C 0.03 1.84 5.50 85.30 0.47 2.31 16 14 N -0.82 -48.73 11.84 21.84 0.26 -48.47 16 15 Si 0.98 40.04 29.56 68.60 2.03 42.07 16 16 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 17 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 19 C 0.07 2.20 5.88 44.99 0.26 2.47 16 20 C -0.17 -3.43 9.20 30.60 0.28 -3.15 16 21 C -0.20 -5.17 9.74 30.59 0.30 -4.87 16 22 C -0.11 -2.40 6.99 22.23 0.16 -2.24 16 23 C -0.06 -1.25 9.76 22.54 0.22 -1.03 16 24 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 25 H 0.11 4.48 7.36 -2.91 -0.02 4.46 16 26 H 0.11 2.75 5.94 -2.39 -0.01 2.74 16 27 H 0.06 2.22 7.43 -2.39 -0.02 2.20 16 28 H 0.27 14.81 8.29 -92.70 -0.77 14.04 16 29 H 0.11 3.84 6.39 -2.38 -0.02 3.83 16 30 H 0.11 1.92 4.56 -2.39 -0.01 1.91 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.09 2.47 5.38 -2.39 -0.01 2.45 16 34 H 0.16 2.65 5.45 -2.91 -0.02 2.63 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -72.33 301.26 6.03 -66.30 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 1.14 Total: 19.84 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 4.56 Total: -1.03 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -1.64 Total: -89.14 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.06 Total: -38.04 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -72.33 6.03 -66.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185473439.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.790 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds