Wall clock time and date at job start Mon Mar 30 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.70892 * 53.14141 * 3 2 1 5 5 C 1.34773 * 120.00109 * 300.53515 * 4 3 2 6 6 O 1.21692 * 120.00116 * 0.02562 * 5 4 3 7 7 C 1.46380 * 120.00167 * 180.02562 * 5 4 3 8 8 H 1.07997 * 119.99856 * 0.02562 * 7 5 4 9 9 C 1.40051 * 119.99853 * 180.02562 * 7 5 4 10 10 N 1.30665 * 120.00418 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 119.99571 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47580 * 59.99964 * 11 9 7 13 13 H 1.48504 * 109.47194 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47171 * 299.99697 * 11 9 7 15 15 C 1.53315 * 109.68247 * 173.67715 * 3 2 1 16 16 C 1.52736 * 108.40095 * 49.86598 * 15 3 2 17 17 C 1.50629 * 110.59802 * 51.04466 * 16 15 3 18 18 C 1.38915 * 117.75352 * 162.33797 * 17 16 15 19 19 C 1.37934 * 120.54468 * 179.74734 * 18 17 16 20 20 C 1.38267 * 119.77093 * 359.95176 * 19 18 17 21 21 C 1.37932 * 119.77342 * 0.12974 * 20 19 18 22 22 C 1.37665 * 122.56812 * 342.26953 * 17 16 15 23 23 C 1.50635 * 122.55919 * 0.75110 * 22 17 16 24 24 H 0.97003 * 120.00319 * 120.54186 * 4 3 2 25 25 H 0.96995 * 120.00100 * 180.02562 * 10 9 7 26 26 H 1.09002 * 109.68281 * 290.14145 * 15 3 2 27 27 H 1.09007 * 109.68025 * 169.59290 * 15 3 2 28 28 H 1.08998 * 109.25048 * 171.33328 * 16 15 3 29 29 H 1.08996 * 109.25103 * 290.75501 * 16 15 3 30 30 H 1.07999 * 119.72715 * 359.70509 * 18 17 16 31 31 H 1.07997 * 120.11459 * 179.97438 * 19 18 17 32 32 H 1.08003 * 120.11109 * 180.10648 * 20 19 18 33 33 H 1.07997 * 119.72572 * 180.02562 * 21 20 19 34 34 H 1.08996 * 109.25434 * 102.43584 * 23 22 17 35 35 H 1.09002 * 109.25264 * 221.90570 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1024 -0.8264 -1.1035 5 6 2.7720 -2.1314 -1.1681 6 8 2.0625 -2.6227 -0.3101 7 6 3.2665 -2.9580 -2.2704 8 1 3.8964 -2.5221 -3.0317 9 6 2.9226 -4.3139 -2.3378 10 7 2.1601 -4.8412 -1.4170 11 14 3.5543 -5.3688 -3.7441 12 1 5.0392 -5.3755 -3.7297 13 1 3.0520 -6.7573 -3.5857 14 1 3.0742 -4.8125 -5.0345 15 6 3.1237 1.4357 -0.1590 16 6 2.4061 2.3213 0.8577 17 6 2.4937 1.7227 2.2371 18 6 2.2348 2.5530 3.3202 19 6 2.2936 2.0637 4.6085 20 6 2.6119 0.7356 4.8246 21 6 2.8710 -0.0901 3.7505 22 6 2.8153 0.4016 2.4526 23 6 3.1227 -0.5518 1.3276 24 1 3.6677 -0.4348 -1.7877 25 1 1.9223 -5.7804 -1.4635 26 1 2.9144 1.7914 -1.1679 27 1 4.1978 1.4622 0.0247 28 1 2.8685 3.3083 0.8642 29 1 1.3582 2.4180 0.5737 30 1 1.9860 3.5905 3.1523 31 1 2.0914 2.7155 5.4455 32 1 2.6578 0.3462 5.8309 33 1 3.1191 -1.1274 3.9201 34 1 4.2011 -0.6960 1.2631 35 1 2.6433 -1.5101 1.5275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187574737.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:38 Heat of formation + Delta-G solvation = -16.269933 kcal Electronic energy + Delta-G solvation = -20161.049904 eV Core-core repulsion = 17122.379143 eV Total energy + Delta-G solvation = -3038.670761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53615 -39.59197 -37.82067 -36.29153 -34.72817 -34.03218 -33.22557 -30.75034 -29.71903 -28.00138 -25.09912 -24.25315 -23.04709 -22.20512 -21.25831 -19.25721 -18.06768 -17.56188 -17.20544 -16.80083 -16.13254 -15.77741 -15.56188 -15.15840 -15.04620 -14.74284 -14.52694 -14.04009 -13.95074 -13.76297 -13.53978 -13.37113 -13.16624 -12.95131 -12.76193 -12.63374 -12.56114 -12.35445 -12.14677 -12.06025 -11.72642 -11.42745 -10.91165 -9.82188 -9.72860 -9.62695 -9.43132 -8.28080 -6.84929 0.47445 0.48961 1.41489 1.44308 1.55664 1.69897 1.81119 2.26032 2.44791 2.85971 2.98725 3.01446 3.60737 3.64010 3.78705 3.98064 4.05515 4.15142 4.25347 4.34053 4.51991 4.64433 4.65891 4.78087 4.94089 4.97094 5.04975 5.12970 5.19614 5.30314 5.33755 5.61366 5.63893 5.76842 5.86560 6.07107 6.16454 6.24996 6.61455 6.88376 7.51149 8.48281 8.66893 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.031955 B = 0.004989 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.022084 B = 5611.538860 C = 5923.933102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.240 3.760 3 C 0.280 3.720 4 N -0.739 5.739 5 C 0.538 3.462 6 O -0.613 6.613 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.030 3.970 10 N -0.821 5.821 11 Si 0.994 3.006 12 H -0.249 1.249 13 H -0.281 1.281 14 H -0.257 1.257 15 C -0.108 4.108 16 C -0.079 4.079 17 C -0.091 4.091 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.088 4.088 23 C -0.077 4.077 24 H 0.410 0.590 25 H 0.272 0.728 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.768 15.548 5.755 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.079 4.079 3 C 0.188 3.812 4 N -0.396 5.396 5 C 0.343 3.657 6 O -0.499 6.499 7 C -0.604 4.604 8 H 0.112 0.888 9 C -0.185 4.185 10 N -0.451 5.451 11 Si 0.814 3.186 12 H -0.173 1.173 13 H -0.206 1.206 14 H -0.181 1.181 15 C -0.146 4.146 16 C -0.116 4.116 17 C -0.091 4.091 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.157 4.157 22 C -0.089 4.089 23 C -0.116 4.116 24 H 0.247 0.753 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.079 0.921 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.159 0.841 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.465 15.037 6.425 17.242 hybrid contribution 0.343 -1.212 -0.665 1.424 sum 5.809 13.825 5.761 16.064 Atomic orbital electron populations 1.80950 1.14852 1.11345 1.09908 1.30135 0.96107 0.90323 0.91320 1.17684 0.78765 0.95013 0.89689 1.46027 1.56185 1.09329 1.28014 1.18642 0.80006 0.80627 0.86459 1.90602 1.42544 1.73092 1.43617 1.21409 1.33933 0.94869 1.10230 0.88762 1.26925 0.92946 0.99729 0.98892 1.70180 1.28323 1.13440 1.33147 0.85119 0.79781 0.76206 0.77525 1.17301 1.20573 1.18091 1.21935 1.02951 0.87914 1.01790 1.20563 1.00868 1.00480 0.89685 1.19853 0.99850 0.92557 0.96868 1.21463 0.99824 1.00659 0.91958 1.21428 0.99536 0.95616 0.97773 1.21333 0.99684 0.94448 0.99024 1.21316 1.01454 1.00235 0.92689 1.19664 1.00819 0.94112 0.94310 1.20744 1.02335 0.97661 0.90866 0.75342 0.91791 0.87811 0.86227 0.85636 0.92085 0.83311 0.83209 0.84142 0.86891 0.87974 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -24.16 18.54 20.00 0.37 -23.79 16 2 C 0.24 10.59 10.64 89.44 0.95 11.54 16 3 C 0.28 10.01 0.77 1.81 0.00 10.01 16 4 N -0.74 -29.76 5.09 -435.38 -2.22 -31.97 16 5 C 0.54 29.25 7.17 86.36 0.62 29.87 16 6 O -0.61 -39.07 12.39 -4.32 -0.05 -39.13 16 7 C -0.57 -30.55 9.54 24.83 0.24 -30.31 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.03 1.65 5.50 85.31 0.47 2.12 16 10 N -0.82 -49.86 11.83 21.84 0.26 -49.60 16 11 Si 0.99 40.07 29.56 68.60 2.03 42.10 16 12 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 13 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 15 C -0.11 -2.42 5.04 30.61 0.15 -2.27 16 16 C -0.08 -1.68 5.17 29.74 0.15 -1.53 16 17 C -0.09 -2.37 5.52 -19.86 -0.11 -2.48 16 18 C -0.12 -2.59 9.61 22.36 0.21 -2.37 16 19 C -0.13 -2.59 10.05 22.20 0.22 -2.36 16 20 C -0.13 -3.03 10.05 22.20 0.22 -2.81 16 21 C -0.14 -4.15 9.61 22.36 0.21 -3.93 16 22 C -0.09 -2.79 5.43 -19.86 -0.11 -2.89 16 23 C -0.08 -2.83 4.20 29.74 0.12 -2.71 16 24 H 0.41 13.14 8.46 -92.71 -0.78 12.36 16 25 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.12 2.06 8.10 -2.38 -0.02 2.04 16 28 H 0.13 1.66 8.12 -2.39 -0.02 1.64 16 29 H 0.06 1.52 7.31 -2.39 -0.02 1.50 16 30 H 0.15 2.22 8.05 -2.91 -0.02 2.20 16 31 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.11 3.42 8.05 -2.91 -0.02 3.40 16 34 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.05 2.60 6.47 -2.39 -0.02 2.59 16 Total: -1.00 -80.24 300.13 4.10 -76.15 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.34 Total: 26.37 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 3.37 Total: -0.12 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -1.59 Total: -105.37 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.05 Total: -39.13 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Total: -80.24 4.10 -76.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187574737.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.878 kcal (2) G-P(sol) polarization free energy of solvation -80.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds