Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.67504 * 151.04767 * 3 2 1 5 5 C 1.34774 * 120.00394 * 59.48656 * 4 3 2 6 6 O 1.21690 * 119.99450 * 359.97438 * 5 4 3 7 7 C 1.46368 * 120.00240 * 179.97438 * 5 4 3 8 8 H 1.08004 * 120.00361 * 0.27161 * 7 5 4 9 9 C 1.40055 * 119.99884 * 179.97438 * 7 5 4 10 10 N 1.30668 * 120.00208 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99830 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47093 * 60.00235 * 11 9 7 13 13 H 1.48495 * 109.47002 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47239 * 299.99955 * 11 9 7 15 15 C 1.53330 * 109.68192 * 30.53350 * 3 2 1 16 16 C 1.52724 * 108.38728 * 170.36990 * 15 3 2 17 17 C 1.50637 * 110.59185 * 51.09799 * 16 15 3 18 18 C 1.38905 * 117.75493 * 162.27150 * 17 16 15 19 19 C 1.37931 * 120.54503 * 179.76561 * 18 17 16 20 20 C 1.38270 * 119.77106 * 359.96052 * 19 18 17 21 21 C 1.37927 * 119.77026 * 0.12269 * 20 19 18 22 22 C 1.37663 * 122.56153 * 342.22610 * 17 16 15 23 23 C 1.50632 * 122.56388 * 0.72977 * 22 17 16 24 24 H 0.97008 * 120.00269 * 239.47689 * 4 3 2 25 25 H 0.96990 * 120.00456 * 179.97438 * 10 9 7 26 26 H 1.08997 * 109.67883 * 290.09474 * 15 3 2 27 27 H 1.09005 * 109.67957 * 50.64062 * 15 3 2 28 28 H 1.08998 * 109.25649 * 171.38527 * 16 15 3 29 29 H 1.09001 * 109.25306 * 290.85373 * 16 15 3 30 30 H 1.08003 * 119.72798 * 359.78863 * 18 17 16 31 31 H 1.07999 * 120.11492 * 179.97438 * 19 18 17 32 32 H 1.07994 * 120.11159 * 180.14246 * 20 19 18 33 33 H 1.07997 * 119.72901 * 180.02562 * 21 20 19 34 34 H 1.08999 * 109.25867 * 221.92710 * 23 22 17 35 35 H 1.09001 * 109.25471 * 102.49192 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.1008 1.2079 -0.6678 5 6 2.7691 2.4244 -0.1917 6 8 2.0600 2.5199 0.7926 7 6 3.2619 3.6306 -0.8586 8 1 3.8877 3.5459 -1.7348 9 6 2.9168 4.8947 -0.3641 10 7 2.1553 4.9973 0.6928 11 14 3.5450 6.4341 -1.2157 12 1 3.0632 6.4545 -2.6202 13 1 3.0408 7.6350 -0.5025 14 1 5.0300 6.4365 -1.2016 15 6 3.1250 -1.2426 -0.7335 16 6 4.6326 -1.0950 -0.9283 17 6 5.3046 -0.7550 0.3763 18 6 6.6765 -0.9519 0.4679 19 6 7.3511 -0.6551 1.6339 20 6 6.6568 -0.1567 2.7208 21 6 5.2942 0.0380 2.6324 22 6 4.6127 -0.2631 1.4601 23 6 3.1233 -0.0390 1.4373 24 1 3.6659 1.1318 -1.4526 25 1 1.9166 5.8727 1.0354 26 1 2.9170 -2.1324 -0.1392 27 1 2.6358 -1.3262 -1.7040 28 1 5.0394 -2.0320 -1.3085 29 1 4.8258 -0.3005 -1.6491 30 1 7.2197 -1.3403 -0.3810 31 1 8.4178 -0.8114 1.6975 32 1 7.1798 0.0797 3.6356 33 1 4.7527 0.4277 3.4816 34 1 2.8947 0.9075 1.9272 35 1 2.6296 -0.8492 1.9738 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187574753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = -13.023882 kcal Electronic energy + Delta-G solvation = -20464.405748 eV Core-core repulsion = 17425.875746 eV Total energy + Delta-G solvation = -3038.530002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.53554 -39.44510 -37.74916 -36.51585 -34.65379 -33.56392 -33.16567 -30.87168 -29.79373 -28.10652 -25.26286 -23.92378 -22.98126 -22.33810 -20.49628 -19.35046 -18.56055 -17.46880 -17.13688 -16.73370 -16.11562 -15.72911 -15.29416 -15.21697 -14.89411 -14.64649 -14.49298 -14.16673 -13.85985 -13.73066 -13.59556 -13.21520 -13.19910 -13.00436 -12.79308 -12.64696 -12.58353 -12.22867 -12.15083 -11.99460 -11.54117 -11.34073 -10.91268 -9.80970 -9.66543 -9.50482 -9.29408 -8.27618 -6.83618 0.60335 0.61331 1.39269 1.42358 1.53180 1.63963 1.75747 2.24978 2.45833 2.92051 2.96941 3.11200 3.62980 3.68151 3.83212 4.11129 4.16198 4.20082 4.30316 4.42771 4.56194 4.60781 4.74113 4.86000 5.02412 5.03981 5.09737 5.22490 5.28540 5.33130 5.41812 5.71467 5.74680 5.87135 5.89569 6.11750 6.24760 6.27932 6.56181 6.88821 7.51824 8.49790 8.68021 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016117 B = 0.007233 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.919460 B = 3870.252048 C = 4728.565897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.233 3.767 3 C 0.282 3.718 4 N -0.732 5.732 5 C 0.544 3.456 6 O -0.614 6.614 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.031 3.969 10 N -0.820 5.820 11 Si 0.991 3.009 12 H -0.256 1.256 13 H -0.279 1.279 14 H -0.252 1.252 15 C -0.108 4.108 16 C -0.072 4.072 17 C -0.081 4.081 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.072 4.072 23 C -0.085 4.085 24 H 0.405 0.595 25 H 0.272 0.728 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.524 -12.976 -3.555 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.086 4.086 3 C 0.190 3.810 4 N -0.389 5.389 5 C 0.348 3.652 6 O -0.499 6.499 7 C -0.605 4.605 8 H 0.108 0.892 9 C -0.185 4.185 10 N -0.450 5.450 11 Si 0.810 3.190 12 H -0.180 1.180 13 H -0.204 1.204 14 H -0.175 1.175 15 C -0.146 4.146 16 C -0.108 4.108 17 C -0.081 4.081 18 C -0.136 4.136 19 C -0.146 4.146 20 C -0.149 4.149 21 C -0.161 4.161 22 C -0.072 4.072 23 C -0.124 4.124 24 H 0.242 0.758 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.140 0.860 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.211 -12.802 -2.729 17.235 hybrid contribution 0.111 1.291 0.092 1.299 sum 11.323 -11.511 -2.637 16.360 Atomic orbital electron populations 1.80983 1.14705 1.10501 1.10103 1.30253 0.96052 0.90898 0.91372 1.17598 0.78274 0.89833 0.95294 1.45972 1.55976 1.03056 1.33934 1.18510 0.79802 0.83237 0.83613 1.90577 1.42652 1.86712 1.29983 1.21374 1.34069 0.90099 1.14966 0.89211 1.26891 0.92989 1.04107 0.94476 1.70173 1.28362 1.25863 1.20553 0.85170 0.79706 0.75287 0.78799 1.17989 1.20449 1.17534 1.21893 0.97217 0.93757 1.01767 1.20522 0.92163 1.04388 0.93774 1.19795 0.94466 0.98820 0.95054 1.21448 0.93094 1.00176 0.98872 1.21383 1.00911 0.99175 0.93118 1.21247 0.93437 1.00023 1.00146 1.21241 0.95804 1.01303 0.97722 1.19374 0.93798 0.99353 0.94672 1.20748 0.93580 1.02729 0.95362 0.75801 0.91854 0.87839 0.88344 0.86019 0.89384 0.82962 0.83540 0.84834 0.87742 0.92048 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.03 18.54 20.01 0.37 -22.66 16 2 C 0.23 9.99 12.73 89.44 1.14 11.13 16 3 C 0.28 9.94 0.61 1.82 0.00 9.94 16 4 N -0.73 -29.75 4.52 -435.36 -1.97 -31.72 16 5 C 0.54 29.72 7.14 86.36 0.62 30.34 16 6 O -0.61 -39.04 12.26 -4.32 -0.05 -39.09 16 7 C -0.57 -31.05 9.54 24.83 0.24 -30.81 16 8 H 0.09 4.33 7.85 -2.91 -0.02 4.31 16 9 C 0.03 1.69 5.50 85.31 0.47 2.16 16 10 N -0.82 -50.07 11.83 21.84 0.26 -49.81 16 11 Si 0.99 40.71 29.56 68.60 2.03 42.74 16 12 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 13 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 15 C -0.11 -2.39 4.99 30.61 0.15 -2.23 16 16 C -0.07 -1.31 5.24 29.74 0.16 -1.16 16 17 C -0.08 -2.00 5.66 -19.86 -0.11 -2.11 16 18 C -0.12 -2.41 9.61 22.36 0.21 -2.19 16 19 C -0.13 -2.69 10.05 22.20 0.22 -2.47 16 20 C -0.13 -3.30 10.05 22.20 0.22 -3.07 16 21 C -0.14 -4.46 9.61 22.36 0.21 -4.24 16 22 C -0.07 -2.27 5.60 -19.86 -0.11 -2.38 16 23 C -0.09 -3.12 4.34 29.74 0.13 -2.99 16 24 H 0.40 13.60 6.74 -92.70 -0.63 12.98 16 25 H 0.27 15.27 8.29 -92.72 -0.77 14.50 16 26 H 0.10 1.92 8.10 -2.39 -0.02 1.90 16 27 H 0.10 1.86 8.12 -2.38 -0.02 1.84 16 28 H 0.12 1.32 8.12 -2.39 -0.02 1.30 16 29 H 0.09 1.57 6.60 -2.39 -0.02 1.55 16 30 H 0.15 2.02 8.05 -2.91 -0.02 2.00 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.10 3.39 8.05 -2.91 -0.02 3.36 16 34 H 0.06 2.93 6.04 -2.39 -0.01 2.92 16 35 H 0.09 2.87 8.10 -2.39 -0.02 2.85 16 Total: -1.00 -79.66 298.86 4.69 -74.98 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.50 Total: 25.66 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 3.55 Total: -0.09 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -1.34 Total: -104.19 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.05 Total: -39.09 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -79.66 4.69 -74.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187574753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.951 kcal (2) G-P(sol) polarization free energy of solvation -79.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds