Wall clock time and date at job start Mon Mar 30 2020 01:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 S 1.81399 * 109.47108 * 179.97438 * 10 9 7 12 12 C 1.81399 * 102.99822 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46807 * 180.02562 * 12 11 10 14 14 H 1.08998 * 110.38058 * 60.93048 * 13 12 11 15 15 C 1.54787 * 110.42130 * 183.44141 * 13 12 11 16 16 C 1.53627 * 101.81261 * 144.95750 * 15 13 12 17 17 C 1.52830 * 115.39241 * 114.74107 * 16 15 13 18 18 C 1.53958 * 86.79231 * 92.43339 * 17 16 15 19 19 C 1.52828 * 115.40662 * 215.34575 * 16 15 13 20 20 C 1.50421 * 105.80636 * 345.06362 * 16 15 13 21 21 O 1.20835 * 125.30474 * 177.57852 * 20 16 15 22 22 O 1.34378 * 109.38769 * 357.61043 * 20 16 15 23 23 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 25 25 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.09001 * 109.47473 * 299.99902 * 12 11 10 29 29 H 1.08999 * 109.46872 * 60.00411 * 12 11 10 30 30 H 1.09000 * 110.96358 * 263.08409 * 15 13 12 31 31 H 1.09000 * 110.96393 * 26.82831 * 15 13 12 32 32 H 1.08995 * 113.66274 * 206.90628 * 17 16 15 33 33 H 1.09004 * 113.66641 * 337.96182 * 17 16 15 34 34 H 1.09003 * 113.58356 * 270.12930 * 18 17 16 35 35 H 1.08994 * 113.58486 * 139.31886 * 18 17 16 36 36 H 1.08994 * 113.66394 * 22.06036 * 19 16 15 37 37 H 1.09004 * 113.65278 * 153.10690 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 16 1.3381 -5.2331 -0.0073 12 6 2.6648 -6.4702 -0.0159 13 6 2.0539 -7.8730 -0.0168 14 1 1.4434 -8.0207 -0.9076 15 6 3.1662 -8.9465 0.0630 16 6 2.4944 -10.0326 0.9170 17 6 2.2377 -11.3604 0.2052 18 6 3.6065 -11.8147 0.7440 19 6 3.4221 -10.7831 1.8718 20 6 1.2937 -9.3773 1.5428 21 8 0.4879 -9.9299 2.2538 22 8 1.2565 -8.0819 1.1874 23 1 -0.4851 0.8401 0.0004 24 1 0.6283 -2.5592 0.8921 25 1 0.6202 -2.5546 -0.8878 26 1 2.8677 -3.6020 -0.9008 27 1 2.8758 -3.6067 0.8792 28 1 3.2769 -6.3404 -0.9084 29 1 3.2848 -6.3441 0.8716 30 1 3.4128 -9.3270 -0.9282 31 1 4.0530 -8.5530 0.5598 32 1 1.3981 -11.9215 0.6154 33 1 2.2016 -11.2749 -0.8809 34 1 4.4362 -11.5858 0.0751 35 1 3.6167 -12.8468 1.0942 36 1 4.3323 -10.2362 2.1176 37 1 2.9153 -11.1818 2.7507 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191065845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:22 Heat of formation + Delta-G solvation = -95.974432 kcal Electronic energy + Delta-G solvation = -17940.806414 eV Core-core repulsion = 15001.830606 eV Total energy + Delta-G solvation = -2938.975807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.60849 -38.91394 -38.78925 -35.77844 -33.62626 -32.90522 -30.07994 -27.40424 -26.84868 -26.09906 -23.71102 -22.97680 -22.27539 -20.05974 -18.67984 -18.33420 -17.89575 -17.29998 -16.63493 -16.50938 -16.26622 -15.85651 -15.49584 -15.02579 -14.70462 -14.36097 -14.19951 -13.89460 -13.69322 -13.48313 -13.33508 -12.96113 -12.92739 -12.49665 -12.40147 -12.21624 -12.17343 -11.77323 -11.63050 -11.49057 -11.36130 -11.11554 -10.92521 -10.76830 -10.62416 -8.62497 -8.23642 -6.37656 0.69757 0.90858 1.41065 1.41826 1.55196 1.75736 2.14122 2.40210 2.83900 3.09825 3.21025 3.33480 3.52835 3.75693 3.81948 3.87615 3.94602 4.27693 4.37039 4.38092 4.46399 4.57592 4.74185 4.75248 4.84186 4.88265 4.91382 4.98016 5.09203 5.11102 5.38073 5.43079 5.48905 5.73494 5.75288 6.09945 6.34792 6.77688 7.32278 8.88575 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.050292 B = 0.003040 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.619867 B = 9208.640690 C = 9464.670943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.042 3.958 10 C -0.046 4.046 11 S -0.324 6.324 12 C -0.075 4.075 13 C 0.097 3.903 14 H 0.111 0.889 15 C -0.107 4.107 16 C -0.156 4.156 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.115 4.115 20 C 0.484 3.516 21 O -0.502 6.502 22 O -0.364 6.364 23 H 0.265 0.735 24 H -0.010 1.010 25 H -0.004 1.004 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.427 -23.930 -2.901 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.089 0.911 9 C 0.004 3.996 10 C -0.194 4.194 11 S -0.096 6.096 12 C -0.222 4.222 13 C 0.042 3.958 14 H 0.129 0.871 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.153 4.153 20 C 0.327 3.673 21 O -0.389 6.389 22 O -0.281 6.281 23 H 0.074 0.926 24 H 0.008 0.992 25 H 0.014 0.986 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.154 0.846 29 H 0.116 0.884 30 H 0.158 0.842 31 H 0.133 0.867 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.703 -24.061 -2.474 26.871 hybrid contribution 0.595 1.452 0.385 1.616 sum 12.298 -22.609 -2.089 25.823 Atomic orbital electron populations 1.70137 1.08116 1.28000 1.51131 1.26077 0.95785 1.03745 0.94404 0.85264 0.79157 0.78058 0.77738 1.17949 1.20282 1.20557 1.21594 0.93796 0.91246 1.51312 0.91137 1.18687 0.93802 0.91779 0.95350 1.23311 0.99924 0.92006 1.04148 1.87457 1.19913 1.04061 1.98194 1.23610 0.98218 0.92412 1.08002 1.23712 0.92498 0.94502 0.85101 0.87136 1.22917 0.96966 0.91145 1.03495 1.22913 0.94573 0.97688 1.00660 1.22818 0.99483 0.91528 1.01369 1.22887 0.96748 0.99228 0.96793 1.22794 0.98277 0.97415 0.96800 1.23564 0.85469 0.80853 0.77451 1.90634 1.45096 1.65751 1.37399 1.87254 1.68325 1.28446 1.44049 0.92612 0.99155 0.98565 0.89698 0.90636 0.84582 0.88440 0.84240 0.86697 0.90688 0.88101 0.87015 0.90103 0.88578 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.04 2.28 4.98 29.85 0.15 2.43 16 10 C -0.05 -1.89 5.88 71.98 0.42 -1.47 16 11 S -0.32 -11.92 21.47 -56.49 -1.21 -13.14 16 12 C -0.07 -1.62 5.64 71.98 0.41 -1.21 16 13 C 0.10 1.86 3.58 31.21 0.11 1.97 16 14 H 0.11 1.95 8.14 -2.39 -0.02 1.94 16 15 C -0.11 -1.03 5.96 31.41 0.19 -0.84 16 16 C -0.16 -2.33 1.13 -52.92 -0.06 -2.39 16 17 C -0.11 -1.28 7.31 30.86 0.23 -1.05 16 18 C -0.12 -0.84 7.93 31.23 0.25 -0.59 16 19 C -0.12 -1.38 7.37 30.86 0.23 -1.15 16 20 C 0.48 13.12 7.83 71.15 0.56 13.68 16 21 O -0.50 -17.52 18.00 21.58 0.39 -17.13 16 22 O -0.36 -10.70 10.47 -53.21 -0.56 -11.26 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 1.99 8.13 -2.39 -0.02 1.97 16 30 H 0.14 0.39 7.83 -2.39 -0.02 0.38 16 31 H 0.11 0.76 7.71 -2.39 -0.02 0.74 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 0.71 7.97 -2.38 -0.02 0.69 16 34 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.10 0.84 7.96 -2.39 -0.02 0.82 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -76.97 323.33 5.14 -71.83 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.04 Total: 1.93 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 3.17 Total: -20.54 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.28 Total: -57.50 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.17 Total: -28.39 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -11.92 SS G_CDS: -1.21 Total: -13.14 kcal Total: -76.97 5.14 -71.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191065845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.143 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds