Wall clock time and date at job start Mon Mar 30 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46755 * 2 1 4 4 H 1.08994 * 109.47438 * 305.00094 * 3 2 1 5 5 C 1.50702 * 109.47090 * 184.99749 * 3 2 1 6 6 H 1.07996 * 120.00122 * 240.00077 * 5 3 2 7 7 C 1.37882 * 119.99492 * 60.00472 * 5 3 2 8 8 N 1.31514 * 120.00401 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99726 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47337 * 119.99827 * 9 7 5 12 12 H 1.48504 * 109.46798 * 240.00232 * 9 7 5 13 13 N 1.46503 * 109.46609 * 64.99991 * 3 2 1 14 14 C 1.34775 * 120.00428 * 274.99549 * 13 3 2 15 15 O 1.21550 * 119.99389 * 0.02562 * 14 13 3 16 16 C 1.47872 * 120.00303 * 180.02562 * 14 13 3 17 17 N 1.32851 * 119.72142 * 359.72906 * 16 14 13 18 18 C 1.31363 * 121.68617 * 180.28287 * 17 16 14 19 19 C 1.38994 * 120.94084 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.33574 * 180.02562 * 19 18 17 21 21 C 1.38724 * 119.34048 * 359.97438 * 19 18 17 22 22 C 1.38834 * 118.44692 * 0.02562 * 21 19 18 23 23 F 1.35098 * 120.48812 * 179.97438 * 22 21 19 24 24 H 1.09003 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47322 * 299.99498 * 1 2 3 26 26 H 1.09000 * 109.47217 * 60.00249 * 1 2 3 27 27 H 1.08996 * 109.47322 * 240.00502 * 2 1 3 28 28 H 1.08993 * 109.47235 * 120.00150 * 2 1 3 29 29 H 0.96993 * 120.00147 * 179.97438 * 8 7 5 30 30 H 0.97008 * 119.99534 * 95.00197 * 13 3 2 31 31 H 1.08005 * 119.52994 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.78031 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8816 -1.3818 10 1 6.5986 1.5476 -0.1947 11 1 6.4971 -0.5170 -1.4630 12 1 6.3988 1.6172 -2.6102 13 7 1.6523 2.0974 1.2519 14 6 0.4350 2.6643 1.3671 15 8 -0.3414 2.6318 0.4324 16 6 0.0439 3.3258 2.6305 17 7 0.8948 3.3533 3.6503 18 6 0.5856 3.9254 4.7917 19 6 -0.6530 4.5285 4.9763 20 9 -0.9580 5.1138 6.1552 21 6 -1.5726 4.5244 3.9377 22 6 -1.2182 3.9124 2.7430 23 9 -2.0822 3.8840 1.7048 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8292 -0.0609 -2.9499 30 1 2.2718 2.1231 1.9979 31 1 1.3040 3.9272 5.5982 32 1 -2.5416 4.9865 4.0557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192211064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:06 Heat of formation + Delta-G solvation = -91.982715 kcal Electronic energy + Delta-G solvation = -20408.417911 eV Core-core repulsion = 16812.234467 eV Total energy + Delta-G solvation = -3596.183444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.43847 -49.04474 -40.39489 -38.59090 -35.12380 -32.94607 -32.22770 -31.36119 -30.44918 -27.06730 -24.92218 -23.98861 -22.93433 -20.93970 -19.44381 -18.49605 -18.30684 -17.94472 -16.50315 -16.29256 -15.94571 -15.60720 -15.36242 -14.97536 -14.70822 -14.53881 -14.15369 -13.51257 -13.34761 -13.12898 -12.71322 -12.61376 -12.01607 -11.52672 -11.26682 -10.97044 -10.85389 -10.38931 -10.26962 -10.20257 -10.15140 -9.65631 -9.26936 -9.12039 -9.05108 -8.51361 -7.87231 -6.12833 -4.21986 0.19862 0.59006 2.76400 3.24553 3.30604 3.33144 3.36213 3.60800 3.81454 3.85561 4.02098 4.26403 4.34348 4.63649 4.94029 5.18672 5.20302 5.42799 5.56728 6.19267 6.38290 6.44565 6.63969 7.02921 7.14876 7.26118 7.33406 7.38027 7.61266 7.72117 7.87723 8.15490 8.58752 8.73575 9.01574 9.44845 10.92691 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027270 B = 0.004923 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.539342 B = 5686.013366 C = 6370.469599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.678 5.678 14 C 0.549 3.451 15 O -0.527 6.527 16 C 0.051 3.949 17 N -0.400 5.400 18 C 0.064 3.936 19 C 0.091 3.909 20 F -0.120 7.120 21 C -0.160 4.160 22 C 0.137 3.863 23 F -0.095 7.095 24 H 0.024 0.976 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.101 0.899 28 H 0.033 0.967 29 H 0.264 0.736 30 H 0.400 0.600 31 H 0.181 0.819 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 6.626 13.809 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.325 5.325 14 C 0.331 3.669 15 O -0.404 6.404 16 C -0.089 4.089 17 N -0.110 5.110 18 C -0.098 4.098 19 C 0.069 3.931 20 F -0.099 7.099 21 C -0.187 4.187 22 C 0.114 3.886 23 F -0.073 7.073 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.234 0.766 31 H 0.198 0.802 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.762 6.088 12.765 15.676 hybrid contribution 0.165 0.544 0.536 0.781 sum -6.597 6.632 13.301 16.261 Atomic orbital electron populations 1.21849 0.98338 0.98204 1.01165 1.21947 0.92605 0.99569 1.02533 1.18936 0.94569 0.89326 0.80565 0.92971 1.21254 0.90476 1.39030 1.06388 0.91828 1.24878 0.98676 0.94741 0.95328 1.69898 1.35083 1.37639 1.09346 0.86383 0.84772 0.77772 0.78131 1.19683 1.20867 1.20900 1.46413 1.13708 1.53476 1.18928 1.17491 0.84084 0.80340 0.84955 1.90846 1.51484 1.59906 1.38206 1.22143 0.90280 1.00250 0.96212 1.67802 1.31763 1.12817 0.98648 1.23084 0.94319 0.95965 0.96424 1.18738 0.95130 0.96970 0.82262 1.91563 1.93276 1.81344 1.43690 1.21650 1.02393 1.02983 0.91633 1.18372 0.88266 0.97014 0.84992 1.91666 1.67210 1.93452 1.54927 0.95675 0.94530 0.92991 0.88039 0.94825 0.92584 0.76618 0.80232 0.81780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.45 11.29 55.43 0.63 -23.82 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.68 -14.44 5.01 -55.87 -0.28 -14.72 16 14 C 0.55 11.25 6.37 -12.32 -0.08 11.17 16 15 O -0.53 -12.26 12.44 5.32 0.07 -12.20 16 16 C 0.05 0.83 6.75 -82.96 -0.56 0.27 16 17 N -0.40 -5.61 9.53 -9.70 -0.09 -5.71 16 18 C 0.06 0.67 11.17 -17.47 -0.20 0.47 16 19 C 0.09 0.90 7.35 -39.12 -0.29 0.61 16 20 F -0.12 -1.10 17.28 2.25 0.04 -1.06 16 21 C -0.16 -1.67 10.14 -39.18 -0.40 -2.07 16 22 C 0.14 1.95 7.31 -38.84 -0.28 1.67 16 23 F -0.09 -1.53 15.54 2.25 0.04 -1.50 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.40 7.77 7.86 -40.82 -0.32 7.45 16 31 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -29.25 284.61 -5.48 -34.72 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.96 Total: 4.48 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.18 Total: 0.05 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.25 Total: -44.25 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.07 Total: -2.55 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.25 -5.48 -34.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192211064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.260 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds