Wall clock time and date at job start Mon Mar 30 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46755 * 2 1 4 4 H 1.08994 * 109.47438 * 305.00094 * 3 2 1 5 5 C 1.50702 * 109.47090 * 184.99749 * 3 2 1 6 6 H 1.07996 * 120.00122 * 240.00077 * 5 3 2 7 7 C 1.37882 * 119.99492 * 60.00472 * 5 3 2 8 8 N 1.31514 * 120.00401 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99726 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47337 * 119.99827 * 9 7 5 12 12 H 1.48504 * 109.46798 * 240.00232 * 9 7 5 13 13 N 1.46503 * 109.46609 * 64.99991 * 3 2 1 14 14 C 1.34775 * 120.00428 * 274.99549 * 13 3 2 15 15 O 1.21550 * 119.99389 * 0.02562 * 14 13 3 16 16 C 1.47872 * 120.00303 * 180.02562 * 14 13 3 17 17 N 1.32851 * 119.72142 * 359.72906 * 16 14 13 18 18 C 1.31363 * 121.68617 * 180.28287 * 17 16 14 19 19 C 1.38994 * 120.94084 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.33574 * 180.02562 * 19 18 17 21 21 C 1.38724 * 119.34048 * 359.97438 * 19 18 17 22 22 C 1.38834 * 118.44692 * 0.02562 * 21 19 18 23 23 F 1.35098 * 120.48812 * 179.97438 * 22 21 19 24 24 H 1.09003 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47322 * 299.99498 * 1 2 3 26 26 H 1.09000 * 109.47217 * 60.00249 * 1 2 3 27 27 H 1.08996 * 109.47322 * 240.00502 * 2 1 3 28 28 H 1.08993 * 109.47235 * 120.00150 * 2 1 3 29 29 H 0.96993 * 120.00147 * 179.97438 * 8 7 5 30 30 H 0.97008 * 119.99534 * 95.00197 * 13 3 2 31 31 H 1.08005 * 119.52994 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.78031 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4445 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8816 -1.3818 10 1 6.5986 1.5476 -0.1947 11 1 6.4971 -0.5170 -1.4630 12 1 6.3988 1.6172 -2.6102 13 7 1.6523 2.0974 1.2519 14 6 0.4350 2.6643 1.3671 15 8 -0.3414 2.6318 0.4324 16 6 0.0439 3.3258 2.6305 17 7 0.8948 3.3533 3.6503 18 6 0.5856 3.9254 4.7917 19 6 -0.6530 4.5285 4.9763 20 9 -0.9580 5.1138 6.1552 21 6 -1.5726 4.5244 3.9377 22 6 -1.2182 3.9124 2.7430 23 9 -2.0822 3.8840 1.7048 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8292 -0.0609 -2.9499 30 1 2.2718 2.1231 1.9979 31 1 1.3040 3.9272 5.5982 32 1 -2.5416 4.9865 4.0557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192211064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:05 Heat of formation + Delta-G solvation = -111.491533 kcal Electronic energy + Delta-G solvation = -20409.263876 eV Core-core repulsion = 16812.234467 eV Total energy + Delta-G solvation = -3597.029409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.24479 -50.18848 -41.56971 -40.10087 -36.99191 -34.44579 -33.67332 -32.89650 -31.81521 -28.98676 -26.13207 -25.19718 -24.60142 -22.50348 -21.27303 -19.79629 -19.35438 -19.14567 -17.92700 -17.51112 -17.19840 -16.98438 -16.59602 -16.48324 -16.16600 -15.85175 -15.49525 -14.84760 -14.60793 -14.47362 -14.37500 -13.78109 -13.63818 -13.45718 -13.18091 -12.88438 -12.69948 -12.17026 -12.07468 -11.61878 -11.41718 -11.07559 -11.05164 -10.82966 -10.53909 -10.18119 -9.66962 -8.15761 -6.32921 -0.85022 -0.31681 1.45570 1.46756 1.57202 1.59131 2.13154 2.42386 2.47607 2.54557 2.79605 2.98519 3.13942 3.41886 3.56586 3.89302 4.23354 4.41191 4.48305 4.55204 4.61192 4.73881 5.04447 5.23169 5.26770 5.41371 5.50841 5.59768 5.77022 5.87412 6.14704 6.29108 6.73133 6.87383 7.28805 7.44549 8.90043 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027270 B = 0.004923 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.539342 B = 5686.013366 C = 6370.469599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.547 3.453 15 O -0.565 6.565 16 C 0.023 3.977 17 N -0.416 5.416 18 C 0.078 3.922 19 C 0.116 3.884 20 F -0.106 7.106 21 C -0.141 4.141 22 C 0.124 3.876 23 F -0.113 7.113 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.409 0.591 31 H 0.220 0.780 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.616 7.505 16.796 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.327 5.327 14 C 0.331 3.669 15 O -0.445 6.445 16 C -0.115 4.115 17 N -0.126 5.126 18 C -0.085 4.085 19 C 0.094 3.906 20 F -0.084 7.084 21 C -0.167 4.167 22 C 0.100 3.900 23 F -0.091 7.091 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.245 0.755 31 H 0.236 0.764 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.351 6.977 15.777 18.382 hybrid contribution -0.028 0.369 -0.229 0.435 sum -6.378 7.346 15.548 18.341 Atomic orbital electron populations 1.21683 0.96986 0.99327 1.00143 1.21793 0.93729 0.98883 1.01549 1.18531 0.94050 0.89373 0.80823 0.97807 1.21559 0.91137 1.39096 1.06801 0.91161 1.25746 1.03350 0.94248 0.94901 1.70042 1.37024 1.38281 1.09856 0.85307 0.79038 0.77874 0.78172 1.18557 1.20325 1.20969 1.46152 1.14645 1.54000 1.17936 1.18054 0.83039 0.79483 0.86287 1.90811 1.52321 1.61131 1.40219 1.21383 0.91937 1.02838 0.95342 1.67735 1.31657 1.13941 0.99259 1.23707 0.95197 0.93893 0.95739 1.18655 0.94471 0.95332 0.82151 1.91618 1.93109 1.80829 1.42877 1.21876 1.03747 1.01287 0.89828 1.18520 0.87498 0.98040 0.85895 1.91618 1.67628 1.93767 1.56119 0.93299 0.94316 0.95213 0.90536 0.94005 0.92511 0.75529 0.76368 0.78528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.03 5.45 30.60 0.17 -5.87 16 3 C 0.28 14.38 2.24 44.25 0.10 14.48 16 4 H 0.00 0.25 7.58 -2.39 -0.02 0.23 16 5 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -52.15 11.29 21.45 0.24 -51.91 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.68 -29.81 5.01 -448.94 -2.25 -32.06 16 14 C 0.55 23.15 6.37 86.79 0.55 23.71 16 15 O -0.57 -27.70 12.44 -3.87 -0.05 -27.75 16 16 C 0.02 0.73 6.75 41.88 0.28 1.01 16 17 N -0.42 -10.90 9.53 -184.61 -1.76 -12.66 16 18 C 0.08 1.32 11.17 84.94 0.95 2.27 16 19 C 0.12 1.78 7.35 22.57 0.17 1.95 16 20 F -0.11 -1.39 17.28 44.97 0.78 -0.62 16 21 C -0.14 -2.49 10.14 22.53 0.23 -2.26 16 22 C 0.12 3.41 7.31 22.75 0.17 3.58 16 23 F -0.11 -3.72 15.54 44.97 0.70 -3.02 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.73 5.64 -2.39 -0.01 1.72 16 26 H 0.03 1.46 7.84 -2.39 -0.02 1.44 16 27 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.41 16.09 7.86 -92.70 -0.73 15.36 16 31 H 0.22 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -66.52 284.61 4.03 -62.49 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.45 Total: 15.25 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 3.90 Total: 6.10 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -3.77 Total: -96.63 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 1.48 Total: -3.63 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -66.52 4.03 -62.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192211064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.005 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds