Wall clock time and date at job start Mon Mar 30 2020 01:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.81491 * 2 1 4 4 C 1.53027 * 109.64930 * 239.46738 * 2 1 3 5 5 C 1.50067 * 110.14448 * 289.75542 * 4 2 1 6 6 C 1.29440 * 124.07853 * 342.86572 * 5 4 2 7 7 C 1.50070 * 124.07431 * 0.46851 * 6 5 4 8 8 C 1.53023 * 110.14812 * 342.86752 * 7 6 5 9 9 H 1.08997 * 109.82233 * 289.65714 * 8 7 6 10 10 C 1.52995 * 109.64256 * 169.11767 * 8 7 6 11 11 O 1.45202 * 109.47074 * 66.06037 * 10 8 7 12 12 C 1.34224 * 117.00197 * 179.97438 * 11 10 8 13 13 O 1.20822 * 120.00429 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00008 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.47279 * 180.02562 * 14 12 11 16 16 C 1.76203 * 99.99786 * 180.02562 * 15 14 12 17 17 H 1.07991 * 120.00453 * 359.72125 * 16 15 14 18 18 C 1.38805 * 119.99580 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00030 * 359.71792 * 18 16 15 20 20 Si 1.86798 * 119.99665 * 179.72429 * 18 16 15 21 21 H 1.48490 * 109.47339 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47239 * 119.99872 * 20 18 16 23 23 H 1.48504 * 109.46636 * 239.99431 * 20 18 16 24 24 H 1.08997 * 109.47291 * 299.47742 * 1 2 3 25 25 H 1.09009 * 109.46653 * 59.47749 * 1 2 3 26 26 H 1.08998 * 109.46833 * 179.47524 * 1 2 3 27 27 H 1.09001 * 109.35183 * 49.95564 * 4 2 1 28 28 H 1.08991 * 109.36295 * 169.54301 * 4 2 1 29 29 H 1.08005 * 117.95812 * 162.84050 * 5 4 2 30 30 H 1.08003 * 117.96199 * 180.44490 * 6 5 4 31 31 H 1.09007 * 109.35786 * 222.66351 * 7 6 5 32 32 H 1.09002 * 109.35953 * 103.07870 * 7 6 5 33 33 H 1.08996 * 109.47541 * 306.05877 * 10 8 7 34 34 H 1.09001 * 109.47222 * 186.05492 * 10 8 7 35 35 H 1.09002 * 109.47315 * 59.99804 * 14 12 11 36 36 H 1.09004 * 109.46949 * 300.00458 * 14 12 11 37 37 H 0.97000 * 119.99668 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0445 -0.7321 -1.2413 5 6 1.7698 -2.2029 -1.1249 6 6 1.4813 -2.8011 -0.0138 7 6 1.3712 -2.1057 1.3115 8 6 2.0456 -0.7338 1.2446 9 1 3.1265 -0.8562 1.1761 10 6 1.6976 0.0721 2.4977 11 8 2.2886 -0.5638 3.6616 12 6 2.0765 0.0229 4.8501 13 8 1.4183 1.0340 4.9158 14 6 2.6583 -0.5801 6.1026 15 16 2.1988 0.4336 7.5301 16 6 2.9881 -0.4748 8.8171 17 1 3.5411 -1.3725 8.5837 18 6 2.8937 -0.0400 10.1319 19 7 2.2192 1.0540 10.4165 20 14 3.7240 -1.0073 11.4974 21 1 4.4126 -2.1888 10.9188 22 1 4.7167 -0.1421 12.1838 23 1 2.7020 -1.4600 12.4751 24 1 -0.3634 0.5057 0.8946 25 1 -0.3633 0.5220 -0.8854 26 1 -0.3633 -1.0276 -0.0094 27 1 1.5428 -0.3399 -2.1259 28 1 3.1183 -0.5716 -1.3364 29 1 1.8154 -2.7993 -2.0242 30 1 1.3086 -3.8668 -0.0425 31 1 1.8567 -2.7100 2.0780 32 1 0.3191 -1.9791 1.5669 33 1 0.6147 0.1110 2.6156 34 1 2.0889 1.0846 2.3989 35 1 3.7443 -0.6173 6.0175 36 1 2.2694 -1.5899 6.2342 37 1 2.1536 1.3580 11.3353 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192494967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:26 Heat of formation + Delta-G solvation = -110.188750 kcal Electronic energy + Delta-G solvation = -18025.807810 eV Core-core repulsion = 15086.215624 eV Total energy + Delta-G solvation = -2939.592187 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.59137 -40.19747 -37.49049 -34.61380 -33.54607 -32.45467 -31.24045 -28.52892 -27.71727 -26.62966 -23.72182 -22.31689 -21.52056 -19.90392 -18.73049 -18.17663 -17.53083 -17.44314 -16.90845 -16.79692 -16.09466 -15.49807 -15.17935 -15.09278 -14.60427 -14.27036 -14.11009 -13.90499 -13.55992 -13.19569 -13.16399 -12.92004 -12.91126 -12.73286 -12.64288 -12.30583 -11.81035 -11.75248 -11.69866 -11.45887 -11.18785 -11.17125 -10.98292 -10.37902 -9.82952 -8.74136 -8.37913 -6.17689 1.02775 1.12968 1.41301 1.42223 1.45968 1.56573 1.89857 2.23579 2.97247 3.25474 3.55959 3.61838 3.73325 4.00383 4.11694 4.18052 4.20146 4.29837 4.38519 4.43802 4.48294 4.57264 4.58847 4.71151 4.80673 4.99828 5.02057 5.10529 5.15810 5.23662 5.26189 5.36779 5.41248 5.48714 5.81992 6.10870 6.18165 6.69855 7.03960 8.71642 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.047473 B = 0.003187 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.665437 B = 8782.568067 C = 9160.444111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.084 4.084 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.088 4.088 8 C -0.075 4.075 9 H 0.084 0.916 10 C 0.065 3.935 11 O -0.349 6.349 12 C 0.487 3.513 13 O -0.523 6.523 14 C -0.108 4.108 15 S -0.139 6.139 16 C -0.548 4.548 17 H 0.086 0.914 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 1.001 2.999 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.273 1.273 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -7.038 -23.247 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.121 4.121 5 C -0.173 4.173 6 C -0.181 4.181 7 C -0.125 4.125 8 C -0.093 4.093 9 H 0.103 0.897 10 C -0.008 4.008 11 O -0.266 6.266 12 C 0.330 3.670 13 O -0.411 6.411 14 C -0.257 4.257 15 S 0.088 5.912 16 C -0.695 4.695 17 H 0.104 0.896 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.823 3.177 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.693 -5.671 -23.111 23.806 hybrid contribution 0.853 -1.242 0.970 1.792 sum 0.160 -6.913 -22.140 23.195 Atomic orbital electron populations 1.21965 0.94741 1.02389 1.01943 1.21176 0.96399 0.99426 0.93234 0.89933 1.20528 1.01755 0.92292 0.97509 1.22207 1.00358 0.96766 0.98010 1.22068 1.01983 0.99982 0.94090 1.20497 1.00849 0.94848 0.96303 1.21263 1.01561 0.95112 0.91373 0.89717 1.23421 0.98287 0.96888 0.82224 1.86475 1.70435 1.54217 1.15514 1.22987 0.77132 0.81927 0.84985 1.90656 1.37980 1.25384 1.87095 1.23089 1.05641 1.04650 0.92308 1.85530 1.70933 1.37154 0.97593 1.23230 1.38721 1.13946 0.93621 0.89599 1.26132 0.95648 0.96257 1.00930 1.70173 1.40248 1.23342 1.20873 0.84869 0.77872 0.78186 0.76811 1.18030 1.19863 1.19883 0.93461 0.91354 0.92094 0.89317 0.90052 0.86678 0.87280 0.91289 0.90909 0.91312 0.91258 0.86074 0.86072 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.32 71.98 0.60 -1.74 16 2 C -0.08 -1.26 2.71 -10.65 -0.03 -1.29 16 3 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 4 C -0.08 -1.02 5.56 29.66 0.16 -0.86 16 5 C -0.16 -2.10 9.40 27.04 0.25 -1.85 16 6 C -0.16 -2.58 9.15 27.04 0.25 -2.33 16 7 C -0.09 -1.66 4.62 29.66 0.14 -1.52 16 8 C -0.07 -1.43 2.28 -10.65 -0.02 -1.45 16 9 H 0.08 1.64 8.13 -2.39 -0.02 1.62 16 10 C 0.07 1.66 4.53 71.98 0.33 1.98 16 11 O -0.35 -10.84 10.01 -51.36 -0.51 -11.36 16 12 C 0.49 18.76 7.97 71.24 0.57 19.33 16 13 O -0.52 -23.54 15.61 21.98 0.34 -23.19 16 14 C -0.11 -4.39 6.27 71.24 0.45 -3.95 16 15 S -0.14 -7.60 20.58 -56.49 -1.16 -8.76 16 16 C -0.55 -30.84 9.50 67.96 0.65 -30.20 16 17 H 0.09 4.50 7.80 -2.92 -0.02 4.48 16 18 C 0.02 0.86 5.49 84.86 0.47 1.33 16 19 N -0.91 -55.01 13.22 21.65 0.29 -54.72 16 20 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H 0.05 0.82 6.80 -2.39 -0.02 0.80 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 0.96 5.71 -2.39 -0.01 0.95 16 27 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.11 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.07 1.43 8.13 -2.38 -0.02 1.41 16 32 H 0.07 1.41 6.86 -2.39 -0.02 1.39 16 33 H 0.07 1.79 6.86 -2.39 -0.02 1.77 16 34 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 35 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.12 4.45 8.14 -2.39 -0.02 4.44 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.43 317.75 5.82 -62.61 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.04 Total: 12.89 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.80 Total: -22.55 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.29 Total: -54.72 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.17 Total: -34.55 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.16 Total: -8.76 kcal Total: -68.43 5.82 -62.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192494967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.579 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds