Wall clock time and date at job start Mon Mar 30 2020 01:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.81183 * 2 1 4 4 C 1.52969 * 109.79493 * 120.41507 * 2 1 3 5 5 C 1.50069 * 110.28624 * 168.92109 * 4 2 1 6 6 C 1.29439 * 124.07867 * 342.97491 * 5 4 2 7 7 C 1.50068 * 124.07622 * 0.49287 * 6 5 4 8 8 C 1.53029 * 110.14630 * 342.86932 * 7 6 5 9 9 H 1.08999 * 109.64250 * 289.54362 * 8 7 6 10 10 C 1.52999 * 109.64350 * 169.11484 * 8 7 6 11 11 O 1.45206 * 109.46777 * 65.42275 * 10 8 7 12 12 C 1.34224 * 117.00077 * 179.97438 * 11 10 8 13 13 O 1.20833 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00302 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47427 * 180.02562 * 14 12 11 16 16 C 1.76202 * 100.00120 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.38794 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31637 * 120.00238 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46775 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47001 * 119.99947 * 20 18 16 23 23 H 1.48497 * 109.47276 * 240.00099 * 20 18 16 24 24 H 1.09004 * 109.47045 * 180.52828 * 1 2 3 25 25 H 1.09001 * 109.46713 * 300.52091 * 1 2 3 26 26 H 1.08997 * 109.47380 * 60.52419 * 1 2 3 27 27 H 1.08999 * 109.18113 * 48.73676 * 4 2 1 28 28 H 1.08997 * 109.39509 * 289.23469 * 4 2 1 29 29 H 1.08003 * 117.96205 * 162.99900 * 5 4 2 30 30 H 1.08001 * 117.96601 * 180.51889 * 6 5 4 31 31 H 1.08996 * 109.36341 * 222.66168 * 7 6 5 32 32 H 1.09006 * 109.35692 * 103.07284 * 7 6 5 33 33 H 1.09000 * 109.47486 * 305.42326 * 10 8 7 34 34 H 1.09001 * 109.47362 * 185.41603 * 10 8 7 35 35 H 1.09009 * 109.46972 * 299.99362 * 14 12 11 36 36 H 1.08995 * 109.47473 * 59.99636 * 14 12 11 37 37 H 0.97003 * 119.99824 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0480 -0.7287 1.2412 5 6 3.5240 -0.9729 1.1231 6 6 4.1831 -0.9081 0.0109 7 6 3.5654 -0.5691 -1.3140 8 6 2.0456 -0.7338 -1.2446 9 1 1.7945 -1.7922 -1.1760 10 6 1.4054 -0.1333 -2.4977 11 8 1.8112 -0.8990 -3.6628 12 6 1.3322 -0.4998 -4.8514 13 8 0.5976 0.4574 -4.9162 14 6 1.7095 -1.2462 -6.1050 15 16 0.9112 -0.4706 -7.5324 16 6 1.5083 -1.5135 -8.8210 17 1 2.1657 -2.3379 -8.5876 18 6 1.1329 -1.2761 -10.1360 19 7 0.3311 -0.2716 -10.4205 20 14 1.7653 -2.3822 -11.5021 21 1 2.6443 -3.4300 -10.9236 22 1 0.6169 -3.0237 -12.1912 23 1 2.5379 -1.5717 -12.4775 24 1 -0.3633 -1.0277 0.0095 25 1 -0.3633 0.5219 0.8853 26 1 -0.3634 0.5056 -0.8946 27 1 1.5305 -1.6830 1.3383 28 1 1.8519 -0.1220 2.1253 29 1 4.0702 -1.2185 2.0218 30 1 5.2436 -1.1109 0.0381 31 1 3.9661 -1.2331 -2.0800 32 1 3.8056 0.4625 -1.5714 33 1 1.7299 0.9010 -2.6116 34 1 0.3200 -0.1651 -2.4021 35 1 2.7915 -1.2164 -6.2339 36 1 1.3816 -2.2825 -6.0236 37 1 0.0691 -0.1055 -11.3396 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192494982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:29 Heat of formation + Delta-G solvation = -95.187217 kcal Electronic energy + Delta-G solvation = -17969.368324 eV Core-core repulsion = 15030.426653 eV Total energy + Delta-G solvation = -2938.941671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.20833 -39.05235 -36.04053 -33.28257 -32.48192 -31.86380 -29.67588 -27.05397 -26.08470 -25.50998 -22.62123 -20.87167 -20.69219 -18.34550 -17.89898 -17.11055 -16.25237 -16.16299 -15.43014 -14.84626 -14.70928 -14.30395 -14.25438 -13.81523 -13.40457 -13.03159 -12.79803 -12.63594 -12.38723 -12.34010 -12.13995 -11.89620 -11.67574 -11.09550 -11.07219 -10.87088 -10.82767 -10.61559 -10.48135 -10.12654 -9.94386 -9.87088 -9.19177 -9.12135 -8.34631 -6.59725 -6.27213 -3.99650 2.08416 2.67623 2.69979 3.19828 3.24560 3.29822 3.53812 4.14950 4.36376 4.42247 4.51706 4.78750 4.96761 5.04810 5.08700 5.14686 5.21118 5.26266 5.33158 5.38207 5.45231 5.53009 5.55881 5.63918 5.72932 5.79492 5.80787 5.86601 5.93338 5.99723 6.09533 6.20153 6.44282 6.72950 6.76176 7.55960 8.21361 8.30889 9.18455 10.80337 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.003226 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.744707 B = 8677.632032 C = 9128.534834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.083 4.083 5 C -0.164 4.164 6 C -0.148 4.148 7 C -0.089 4.089 8 C -0.081 4.081 9 H 0.084 0.916 10 C 0.067 3.933 11 O -0.360 6.360 12 C 0.478 3.522 13 O -0.490 6.490 14 C -0.129 4.129 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -1.653 21.936 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.120 4.120 5 C -0.182 4.182 6 C -0.166 4.166 7 C -0.125 4.125 8 C -0.099 4.099 9 H 0.102 0.898 10 C -0.007 4.007 11 O -0.278 6.278 12 C 0.320 3.680 13 O -0.376 6.376 14 C -0.276 4.276 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.095 0.905 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.748 3.252 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.745 -0.350 21.768 22.090 hybrid contribution 1.247 -1.661 -0.730 2.201 sum 4.992 -2.011 21.038 21.715 Atomic orbital electron populations 1.21964 0.94713 1.02336 1.02281 1.21145 0.95770 0.99698 0.93701 0.90596 1.20471 0.93258 1.00626 0.97655 1.22023 0.96159 1.02195 0.97828 1.22102 0.99659 1.00358 0.94530 1.20519 0.94037 1.02343 0.95637 1.21268 0.95336 1.01148 0.92193 0.89760 1.23180 0.99995 0.95056 0.82467 1.86490 1.68699 1.56817 1.15813 1.23282 0.77477 0.83005 0.84276 1.90663 1.33589 1.26721 1.86577 1.23288 1.06279 1.03564 0.94513 1.85414 1.62980 1.41187 0.93773 1.22888 1.35222 1.17164 0.93046 0.90542 1.25009 0.94712 0.95730 0.98108 1.70027 1.32360 1.27819 1.20048 0.86067 0.78659 0.79869 0.80627 1.19494 1.20509 1.20515 0.92292 0.92369 0.91838 0.90778 0.90958 0.88099 0.87959 0.90009 0.90698 0.91346 0.90727 0.87984 0.87981 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.66 37.16 0.32 -0.94 16 2 C -0.08 -0.72 2.40 -90.43 -0.22 -0.94 16 3 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 4 C -0.08 -0.63 5.44 -28.20 -0.15 -0.78 16 5 C -0.16 -1.34 9.81 -35.90 -0.35 -1.69 16 6 C -0.15 -1.32 9.80 -35.90 -0.35 -1.67 16 7 C -0.09 -0.89 5.25 -28.17 -0.15 -1.04 16 8 C -0.08 -0.83 2.10 -90.40 -0.19 -1.02 16 9 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 10 C 0.07 0.87 4.46 37.16 0.17 1.04 16 11 O -0.36 -5.74 9.98 -39.24 -0.39 -6.14 16 12 C 0.48 9.27 7.98 36.00 0.29 9.56 16 13 O -0.49 -10.86 15.61 -18.76 -0.29 -11.15 16 14 C -0.13 -2.64 6.27 36.00 0.23 -2.42 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 17 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 20 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.57 6.27 -51.93 -0.33 0.25 16 27 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 30 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.47 16 34 H 0.07 0.97 6.09 -51.93 -0.32 0.65 16 35 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 36 H 0.10 1.95 8.14 -51.92 -0.42 1.52 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -31.66 321.35 -8.23 -39.89 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.67 Total: -2.01 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -0.21 Total: -12.69 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.73 Total: -25.09 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.68 Total: -17.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.66 -8.23 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192494982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.297 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds