Wall clock time and date at job start Mon Mar 30 2020 01:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.81183 * 2 1 4 4 C 1.52969 * 109.79493 * 120.41507 * 2 1 3 5 5 C 1.50069 * 110.28624 * 168.92109 * 4 2 1 6 6 C 1.29439 * 124.07867 * 342.97491 * 5 4 2 7 7 C 1.50068 * 124.07622 * 0.49287 * 6 5 4 8 8 C 1.53029 * 110.14630 * 342.86932 * 7 6 5 9 9 H 1.08999 * 109.64250 * 289.54362 * 8 7 6 10 10 C 1.52999 * 109.64350 * 169.11484 * 8 7 6 11 11 O 1.45206 * 109.46777 * 65.42275 * 10 8 7 12 12 C 1.34224 * 117.00077 * 179.97438 * 11 10 8 13 13 O 1.20833 * 120.00103 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00302 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47427 * 180.02562 * 14 12 11 16 16 C 1.76202 * 100.00120 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.38794 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31637 * 120.00238 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00119 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46775 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47001 * 119.99947 * 20 18 16 23 23 H 1.48497 * 109.47276 * 240.00099 * 20 18 16 24 24 H 1.09004 * 109.47045 * 180.52828 * 1 2 3 25 25 H 1.09001 * 109.46713 * 300.52091 * 1 2 3 26 26 H 1.08997 * 109.47380 * 60.52419 * 1 2 3 27 27 H 1.08999 * 109.18113 * 48.73676 * 4 2 1 28 28 H 1.08997 * 109.39509 * 289.23469 * 4 2 1 29 29 H 1.08003 * 117.96205 * 162.99900 * 5 4 2 30 30 H 1.08001 * 117.96601 * 180.51889 * 6 5 4 31 31 H 1.08996 * 109.36341 * 222.66168 * 7 6 5 32 32 H 1.09006 * 109.35692 * 103.07284 * 7 6 5 33 33 H 1.09000 * 109.47486 * 305.42326 * 10 8 7 34 34 H 1.09001 * 109.47362 * 185.41603 * 10 8 7 35 35 H 1.09009 * 109.46972 * 299.99362 * 14 12 11 36 36 H 1.08995 * 109.47473 * 59.99636 * 14 12 11 37 37 H 0.97003 * 119.99824 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0480 -0.7287 1.2412 5 6 3.5240 -0.9729 1.1231 6 6 4.1831 -0.9081 0.0109 7 6 3.5654 -0.5691 -1.3140 8 6 2.0456 -0.7338 -1.2446 9 1 1.7945 -1.7922 -1.1760 10 6 1.4054 -0.1333 -2.4977 11 8 1.8112 -0.8990 -3.6628 12 6 1.3322 -0.4998 -4.8514 13 8 0.5976 0.4574 -4.9162 14 6 1.7095 -1.2462 -6.1050 15 16 0.9112 -0.4706 -7.5324 16 6 1.5083 -1.5135 -8.8210 17 1 2.1657 -2.3379 -8.5876 18 6 1.1329 -1.2761 -10.1360 19 7 0.3311 -0.2716 -10.4205 20 14 1.7653 -2.3822 -11.5021 21 1 2.6443 -3.4300 -10.9236 22 1 0.6169 -3.0237 -12.1912 23 1 2.5379 -1.5717 -12.4775 24 1 -0.3633 -1.0277 0.0095 25 1 -0.3633 0.5219 0.8853 26 1 -0.3634 0.5056 -0.8946 27 1 1.5305 -1.6830 1.3383 28 1 1.8519 -0.1220 2.1253 29 1 4.0702 -1.2185 2.0218 30 1 5.2436 -1.1109 0.0381 31 1 3.9661 -1.2331 -2.0800 32 1 3.8056 0.4625 -1.5714 33 1 1.7299 0.9010 -2.6116 34 1 0.3200 -0.1651 -2.4021 35 1 2.7915 -1.2164 -6.2339 36 1 1.3816 -2.2825 -6.0236 37 1 0.0691 -0.1055 -11.3396 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192494982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:28 Heat of formation + Delta-G solvation = -111.795093 kcal Electronic energy + Delta-G solvation = -17970.088496 eV Core-core repulsion = 15030.426653 eV Total energy + Delta-G solvation = -2939.661843 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.57231 -39.96360 -37.46036 -34.61318 -34.01461 -32.73307 -31.23700 -27.90252 -27.65060 -26.90446 -23.49943 -22.27960 -21.48312 -19.89491 -19.10203 -18.61625 -17.57156 -17.35393 -16.89902 -16.47944 -16.08356 -15.52982 -15.20909 -14.94302 -14.60527 -14.38351 -14.00029 -13.79521 -13.44335 -13.20300 -13.07556 -13.00270 -12.91806 -12.86231 -12.65933 -12.58823 -11.78859 -11.75941 -11.67709 -11.49199 -11.22890 -11.17712 -10.93780 -10.37841 -9.84662 -8.74067 -8.37865 -6.17675 1.02796 1.13009 1.41241 1.42228 1.43993 1.56545 1.89910 2.23570 2.97273 3.25471 3.55979 3.64459 3.67818 3.99200 4.01300 4.16986 4.21083 4.27965 4.40558 4.43603 4.53711 4.56728 4.60119 4.67654 4.82847 4.91544 5.00837 5.08077 5.15133 5.20337 5.29292 5.34215 5.41213 5.48554 5.79738 6.08792 6.18165 6.69923 7.04008 8.71662 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.043217 B = 0.003226 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.744707 B = 8677.632032 C = 9128.534834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.081 4.081 3 H 0.075 0.925 4 C -0.083 4.083 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.089 4.089 8 C -0.074 4.074 9 H 0.084 0.916 10 C 0.063 3.937 11 O -0.350 6.350 12 C 0.487 3.513 13 O -0.523 6.523 14 C -0.109 4.109 15 S -0.139 6.139 16 C -0.548 4.548 17 H 0.086 0.914 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 1.001 2.999 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.273 1.273 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -3.070 23.259 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.100 4.100 3 H 0.093 0.907 4 C -0.120 4.120 5 C -0.177 4.177 6 C -0.182 4.182 7 C -0.126 4.126 8 C -0.093 4.093 9 H 0.102 0.898 10 C -0.011 4.011 11 O -0.267 6.267 12 C 0.330 3.670 13 O -0.411 6.411 14 C -0.257 4.257 15 S 0.088 5.912 16 C -0.695 4.695 17 H 0.104 0.896 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.822 3.178 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.804 -1.778 23.124 23.684 hybrid contribution 0.925 -1.201 -0.973 1.801 sum 5.729 -2.978 22.151 23.073 Atomic orbital electron populations 1.21958 0.94363 1.02564 1.02347 1.21141 0.96025 0.99551 0.93247 0.90698 1.20518 0.92885 1.01100 0.97488 1.22251 0.96548 1.00799 0.98095 1.22111 1.00260 1.01746 0.94103 1.20489 0.93783 1.01940 0.96372 1.21275 0.95476 1.01102 0.91429 0.89805 1.23507 1.00481 0.94997 0.82108 1.86471 1.67938 1.56796 1.15456 1.22986 0.76854 0.82196 0.84998 1.90658 1.35175 1.28136 1.87144 1.23087 1.06567 1.03746 0.92295 1.85528 1.64847 1.43328 0.97481 1.23229 1.35386 1.17341 0.93560 0.89603 1.26129 0.94674 0.97220 1.00935 1.70175 1.33802 1.29806 1.20857 0.84872 0.78238 0.77825 0.76815 1.18031 1.19863 1.19880 0.92015 0.90894 0.93179 0.90103 0.89292 0.86516 0.87156 0.91023 0.91102 0.91581 0.90655 0.86079 0.86074 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.66 71.98 0.62 -1.65 16 2 C -0.08 -1.24 2.40 -10.67 -0.03 -1.27 16 3 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 4 C -0.08 -1.03 5.44 29.64 0.16 -0.87 16 5 C -0.16 -2.20 9.81 27.04 0.27 -1.93 16 6 C -0.16 -2.65 9.80 27.04 0.27 -2.38 16 7 C -0.09 -1.70 5.25 29.66 0.16 -1.54 16 8 C -0.07 -1.44 2.10 -10.65 -0.02 -1.46 16 9 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 10 C 0.06 1.59 4.46 71.98 0.32 1.91 16 11 O -0.35 -10.88 9.98 -51.35 -0.51 -11.39 16 12 C 0.49 18.77 7.98 71.23 0.57 19.34 16 13 O -0.52 -23.53 15.61 21.94 0.34 -23.19 16 14 C -0.11 -4.40 6.27 71.23 0.45 -3.95 16 15 S -0.14 -7.58 20.57 -56.49 -1.16 -8.74 16 16 C -0.55 -30.84 9.50 67.95 0.65 -30.20 16 17 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 18 C 0.02 0.87 5.49 84.86 0.47 1.33 16 19 N -0.91 -55.01 13.22 21.65 0.29 -54.72 16 20 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 0.87 6.27 -2.39 -0.01 0.85 16 27 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 1.27 8.06 -2.91 -0.02 1.24 16 30 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.07 1.48 8.11 -2.39 -0.02 1.47 16 32 H 0.07 1.38 8.07 -2.38 -0.02 1.36 16 33 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 34 H 0.08 1.93 6.09 -2.39 -0.01 1.92 16 35 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.12 4.46 8.14 -2.40 -0.02 4.44 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.42 321.35 5.89 -62.53 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.04 Total: 13.10 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 3.87 Total: -22.67 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.29 Total: -54.72 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.17 Total: -34.58 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.16 Total: -8.74 kcal Total: -68.42 5.89 -62.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192494982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.262 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds