Wall clock time and date at job start Mon Mar 30 2020 01:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.64307 * 2 1 4 4 C 1.53022 * 109.63993 * 239.36435 * 2 1 3 5 5 C 1.50074 * 110.14426 * 190.87716 * 4 2 1 6 6 C 1.29445 * 124.07514 * 17.13768 * 5 4 2 7 7 C 1.50066 * 124.07462 * 359.52270 * 6 5 4 8 8 C 1.53020 * 110.14929 * 17.13805 * 7 6 5 9 9 H 1.08999 * 109.64366 * 70.45381 * 8 7 6 10 10 C 1.52998 * 109.64283 * 190.88021 * 8 7 6 11 11 O 1.45198 * 109.46730 * 294.99540 * 10 8 7 12 12 C 1.34231 * 116.99965 * 180.02562 * 11 10 8 13 13 O 1.20827 * 119.99749 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00205 * 180.02562 * 12 11 10 15 15 S 1.80993 * 109.47346 * 179.97438 * 14 12 11 16 16 C 1.76202 * 100.00330 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99251 * 0.02562 * 16 15 14 18 18 C 1.38794 * 120.00481 * 180.02562 * 16 15 14 19 19 N 1.31637 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00399 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47230 * 59.99720 * 20 18 16 22 22 H 1.48497 * 109.47618 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47100 * 299.99896 * 20 18 16 24 24 H 1.09004 * 109.46970 * 299.57816 * 1 2 3 25 25 H 1.08994 * 109.47117 * 59.57597 * 1 2 3 26 26 H 1.08996 * 109.46919 * 179.57876 * 1 2 3 27 27 H 1.08995 * 109.36175 * 311.08579 * 4 2 1 28 28 H 1.09007 * 109.35760 * 70.81533 * 4 2 1 29 29 H 1.08001 * 117.96056 * 197.15499 * 5 4 2 30 30 H 1.08002 * 117.96033 * 179.81016 * 6 5 4 31 31 H 1.08999 * 109.35552 * 137.34338 * 7 6 5 32 32 H 1.08998 * 109.35877 * 257.06324 * 7 6 5 33 33 H 1.08998 * 109.47161 * 54.99619 * 10 8 7 34 34 H 1.09004 * 109.46825 * 175.00124 * 10 8 7 35 35 H 1.09000 * 109.47272 * 300.00422 * 14 12 11 36 36 H 1.09001 * 109.46981 * 59.99615 * 14 12 11 37 37 H 0.96993 * 120.00183 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0266 0.0000 4 6 2.0443 -0.7344 -1.2400 5 6 3.5212 -0.9742 -1.1232 6 6 4.1818 -0.9036 -0.0123 7 6 3.5650 -0.5620 1.3124 8 6 2.0456 -0.7315 1.2458 9 1 1.7977 -1.7910 1.1813 10 6 1.4055 -0.1287 2.4979 11 8 1.8234 -0.8831 3.6661 12 6 1.3459 -0.4806 4.8543 13 8 0.6030 0.4703 4.9161 14 6 1.7364 -1.2147 6.1111 15 16 0.9372 -0.4374 7.5369 16 6 1.5505 -1.4655 8.8297 17 1 2.2156 -2.2845 8.5988 18 6 1.1789 -1.2230 10.1448 19 7 0.3687 -0.2244 10.4263 20 14 1.8296 -2.3125 11.5155 21 1 3.3127 -2.2411 11.5427 22 1 1.2882 -1.8468 12.8174 23 1 1.4060 -3.7155 11.2760 24 1 -0.3633 0.5073 0.8938 25 1 -0.3633 0.5204 -0.8861 26 1 -0.3633 -1.0276 -0.0076 27 1 1.5293 -1.6904 -1.3333 28 1 1.8475 -0.1299 -2.1255 29 1 4.0668 -1.2208 -2.0221 30 1 5.2437 -1.0983 -0.0413 31 1 3.9689 -1.2221 2.0800 32 1 3.8004 0.4719 1.5647 33 1 1.7212 0.9092 2.6036 34 1 0.3201 -0.1710 2.4073 35 1 1.4184 -2.2547 6.0381 36 1 2.8186 -1.1736 6.2345 37 1 0.1093 -0.0546 11.3454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192494995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:30 Heat of formation + Delta-G solvation = -111.727277 kcal Electronic energy + Delta-G solvation = -17970.702230 eV Core-core repulsion = 15031.043328 eV Total energy + Delta-G solvation = -2939.658902 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.57321 -39.96651 -37.46099 -34.61227 -34.01135 -32.73199 -31.23714 -27.90056 -27.64651 -26.89990 -23.49763 -22.27679 -21.48117 -19.89239 -19.10583 -18.61867 -17.57041 -17.35236 -16.89425 -16.47704 -16.08324 -15.52277 -15.20927 -14.94527 -14.59891 -14.38472 -14.00307 -13.79937 -13.44448 -13.20841 -13.07117 -12.99976 -12.87153 -12.86095 -12.67886 -12.59198 -11.81979 -11.76913 -11.67779 -11.49696 -11.22661 -11.14544 -10.93549 -10.38656 -9.84679 -8.74094 -8.37414 -6.17534 1.02788 1.13014 1.41136 1.44070 1.45000 1.54196 1.89847 2.24218 2.97505 3.25552 3.56025 3.64387 3.67968 3.99323 4.01736 4.17003 4.21035 4.27992 4.40528 4.43613 4.53820 4.56538 4.60057 4.67635 4.82965 4.91754 5.00800 5.08082 5.15128 5.20301 5.29330 5.34211 5.40671 5.48647 5.79759 6.08821 6.17811 6.69903 7.04063 8.71672 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.043233 B = 0.003227 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.494823 B = 8675.228270 C = 9129.590015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.081 4.081 3 H 0.075 0.925 4 C -0.083 4.083 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.089 4.089 8 C -0.074 4.074 9 H 0.084 0.916 10 C 0.063 3.937 11 O -0.350 6.350 12 C 0.487 3.513 13 O -0.522 6.522 14 C -0.109 4.109 15 S -0.138 6.138 16 C -0.550 4.550 17 H 0.086 0.914 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 1.000 3.000 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.262 1.262 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 -3.161 -23.248 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.100 4.100 3 H 0.093 0.907 4 C -0.120 4.120 5 C -0.177 4.177 6 C -0.182 4.182 7 C -0.126 4.126 8 C -0.093 4.093 9 H 0.102 0.898 10 C -0.011 4.011 11 O -0.267 6.267 12 C 0.330 3.670 13 O -0.411 6.411 14 C -0.257 4.257 15 S 0.089 5.911 16 C -0.698 4.698 17 H 0.104 0.896 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.186 1.186 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.728 -1.870 -23.111 23.663 hybrid contribution 0.950 -1.195 0.967 1.807 sum 5.678 -3.065 -22.144 23.065 Atomic orbital electron populations 1.21965 0.94406 1.02558 1.02338 1.21155 0.96039 0.99519 0.93244 0.90670 1.20533 0.92882 1.01053 0.97491 1.22261 0.96574 1.00800 0.98086 1.22112 1.00246 1.01752 0.94111 1.20491 0.93816 1.01901 0.96380 1.21280 0.95498 1.01085 0.91432 0.89778 1.23502 1.00348 0.95202 0.82028 1.86471 1.67631 1.57216 1.15339 1.22988 0.77005 0.81993 0.85049 1.90656 1.34909 1.28307 1.87236 1.23087 1.06500 1.03877 0.92239 1.85521 1.64170 1.44137 0.97299 1.23173 1.34940 1.18173 0.93469 0.89579 1.26126 0.94717 0.97094 1.00962 1.70160 1.33564 1.29900 1.21022 0.84979 0.78853 0.78134 0.75899 1.18628 1.20333 1.18607 0.93205 0.90903 0.92018 0.90046 0.89295 0.86530 0.87167 0.91018 0.91115 0.91585 0.90675 0.86072 0.86074 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.66 71.98 0.62 -1.65 16 2 C -0.08 -1.24 2.39 -10.65 -0.03 -1.27 16 3 H 0.07 1.18 8.13 -2.39 -0.02 1.17 16 4 C -0.08 -1.03 5.44 29.66 0.16 -0.87 16 5 C -0.16 -2.20 9.80 27.04 0.27 -1.94 16 6 C -0.16 -2.65 9.80 27.03 0.27 -2.38 16 7 C -0.09 -1.70 5.24 29.66 0.16 -1.54 16 8 C -0.07 -1.44 2.11 -10.65 -0.02 -1.46 16 9 H 0.08 1.66 8.13 -2.39 -0.02 1.64 16 10 C 0.06 1.60 4.44 71.98 0.32 1.92 16 11 O -0.35 -10.87 9.97 -51.42 -0.51 -11.39 16 12 C 0.49 18.78 7.98 71.24 0.57 19.34 16 13 O -0.52 -23.53 15.61 21.96 0.34 -23.19 16 14 C -0.11 -4.40 6.27 71.24 0.45 -3.95 16 15 S -0.14 -7.55 20.58 -56.49 -1.16 -8.71 16 16 C -0.55 -30.99 9.50 67.95 0.65 -30.35 16 17 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 18 C 0.02 0.91 5.49 84.86 0.47 1.37 16 19 N -0.91 -55.09 13.22 21.65 0.29 -54.80 16 20 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 24 H 0.05 0.86 6.28 -2.38 -0.01 0.85 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 28 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.07 1.49 8.10 -2.39 -0.02 1.47 16 32 H 0.07 1.38 8.07 -2.39 -0.02 1.36 16 33 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 34 H 0.08 1.93 6.13 -2.39 -0.01 1.91 16 35 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.12 4.46 8.14 -2.40 -0.02 4.44 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.41 321.34 5.89 -62.52 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.04 Total: 13.34 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.87 Total: -22.78 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.29 Total: -54.80 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.17 Total: -34.58 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.71 kcal Total: -68.41 5.89 -62.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192494995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.204 kcal (2) G-P(sol) polarization free energy of solvation -68.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds