Wall clock time and date at job start Mon Mar 30 2020 01:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.64190 * 2 1 4 4 C 1.53026 * 109.64075 * 120.41457 * 2 1 3 5 5 C 1.50072 * 110.14449 * 70.46100 * 4 2 1 6 6 C 1.29446 * 124.07576 * 17.13099 * 5 4 2 7 7 C 1.50061 * 124.07264 * 359.53010 * 6 5 4 8 8 C 1.53019 * 110.15324 * 17.13191 * 7 6 5 9 9 H 1.09005 * 109.64113 * 70.24685 * 8 7 6 10 10 C 1.52999 * 109.82166 * 190.77378 * 8 7 6 11 11 O 1.45200 * 109.46903 * 294.05117 * 10 8 7 12 12 C 1.34233 * 116.99537 * 179.97438 * 11 10 8 13 13 O 1.20819 * 120.00231 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99664 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47213 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00133 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.38791 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00403 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99905 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47136 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47040 * 120.00248 * 20 18 16 23 23 H 1.48503 * 109.47275 * 239.99822 * 20 18 16 24 24 H 1.09002 * 109.47428 * 299.58958 * 1 2 3 25 25 H 1.09002 * 109.47168 * 59.58475 * 1 2 3 26 26 H 1.09000 * 109.47255 * 179.58200 * 1 2 3 27 27 H 1.09000 * 109.35986 * 190.66705 * 4 2 1 28 28 H 1.09002 * 109.36098 * 310.25808 * 4 2 1 29 29 H 1.08000 * 117.96229 * 197.11256 * 5 4 2 30 30 H 1.07999 * 117.96106 * 179.50910 * 6 5 4 31 31 H 1.08998 * 109.35728 * 256.92105 * 7 6 5 32 32 H 1.09009 * 109.24089 * 137.27026 * 7 6 5 33 33 H 1.08999 * 109.47090 * 54.04876 * 10 8 7 34 34 H 1.09001 * 109.46939 * 174.05096 * 10 8 7 35 35 H 1.09003 * 109.47047 * 300.00039 * 14 12 11 36 36 H 1.09002 * 109.47258 * 60.00027 * 14 12 11 37 37 H 0.97003 * 120.00756 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0266 0.0000 4 6 2.0443 -0.7296 1.2429 5 6 1.7742 -2.2013 1.1271 6 6 1.4896 -2.8012 0.0159 7 6 1.3799 -2.1072 -1.3101 8 6 2.0500 -0.7331 -1.2430 9 1 3.1307 -0.8557 -1.1707 10 6 1.7066 0.0733 -2.4970 11 8 2.3019 -0.5620 -3.6590 12 6 2.0933 0.0248 -4.8481 13 8 1.4347 1.0354 -4.9158 14 6 2.6805 -0.5771 -6.0987 15 16 2.2248 0.4363 -7.5275 16 6 3.0188 -0.4714 -8.8122 17 1 3.5759 -1.3660 -8.5764 18 6 2.9282 -0.0366 -10.1271 19 7 2.2488 1.0535 -10.4146 20 14 3.7706 -0.9985 -11.4890 21 1 4.4632 -2.1764 -10.9076 22 1 2.7559 -1.4567 -12.4719 23 1 4.7616 -0.1273 -12.1704 24 1 -0.3634 0.5074 0.8936 25 1 -0.3633 0.5203 -0.8863 26 1 -0.3634 -1.0276 -0.0075 27 1 3.1176 -0.5658 1.3398 28 1 1.5399 -0.3382 2.1263 29 1 1.8206 -2.7970 2.0267 30 1 1.3208 -3.8675 0.0449 31 1 0.3279 -1.9839 -1.5674 32 1 1.8702 -2.7114 -2.0734 33 1 0.6242 0.1123 -2.6188 34 1 2.0977 1.0858 -2.3962 35 1 3.7663 -0.6127 -6.0095 36 1 2.2935 -1.5874 -6.2320 37 1 2.1858 1.3577 -11.3335 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192495006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:33 Heat of formation + Delta-G solvation = -93.524657 kcal Electronic energy + Delta-G solvation = -18022.993478 eV Core-core repulsion = 15084.123901 eV Total energy + Delta-G solvation = -2938.869577 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.27125 -39.25673 -36.06221 -32.76048 -32.48372 -31.64957 -29.70084 -27.72908 -25.83717 -25.48111 -22.87341 -20.92575 -20.71445 -17.96146 -17.45010 -17.06471 -16.57130 -16.17110 -15.55862 -14.84684 -14.60966 -14.58122 -14.04632 -13.95814 -13.40304 -13.22823 -12.76159 -12.66823 -12.56050 -12.08035 -11.96144 -11.92444 -11.53066 -11.09526 -11.07337 -10.84842 -10.82106 -10.68763 -10.35861 -10.21273 -9.94912 -9.87324 -9.18613 -9.12191 -8.34657 -6.59775 -6.27182 -3.99663 2.09306 2.67432 2.69874 3.19808 3.24534 3.29812 3.53704 4.14929 4.35666 4.40481 4.56962 4.92893 4.95483 5.00841 5.08739 5.11309 5.18984 5.21737 5.34405 5.41552 5.45821 5.53495 5.60320 5.66475 5.73916 5.78992 5.79897 5.84850 5.94638 6.05139 6.09524 6.19060 6.45715 6.73291 6.76542 7.55947 8.21178 8.30881 9.18464 10.80383 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.003187 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.976721 B = 8784.828767 C = 9162.961499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.084 4.084 5 C -0.161 4.161 6 C -0.149 4.149 7 C -0.089 4.089 8 C -0.081 4.081 9 H 0.084 0.916 10 C 0.070 3.930 11 O -0.360 6.360 12 C 0.478 3.522 13 O -0.490 6.490 14 C -0.128 4.128 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -5.582 21.935 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.121 4.121 5 C -0.179 4.179 6 C -0.167 4.167 7 C -0.125 4.125 8 C -0.099 4.099 9 H 0.102 0.898 10 C -0.004 4.004 11 O -0.278 6.278 12 C 0.320 3.680 13 O -0.375 6.375 14 C -0.276 4.276 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.095 0.905 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.748 3.252 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.726 -4.200 21.763 22.231 hybrid contribution 1.188 -1.691 -0.723 2.190 sum -0.538 -5.891 21.039 21.855 Atomic orbital electron populations 1.21968 0.94764 1.02520 1.01840 1.21144 0.96395 0.99166 0.93705 0.90529 1.20482 1.01134 0.92783 0.97688 1.21995 1.01837 0.96301 0.97783 1.22079 1.00532 0.99522 0.94533 1.20534 1.01301 0.95101 0.95594 1.21245 1.01468 0.95057 0.92165 0.89771 1.23085 0.98410 0.96299 0.82603 1.86495 1.70684 1.54696 1.15931 1.23284 0.77952 0.82578 0.84228 1.90660 1.36466 1.23926 1.86473 1.23290 1.04401 1.05382 0.94567 1.85415 1.69850 1.34187 0.93914 1.22886 1.38350 1.13926 0.93157 0.90541 1.25006 0.95199 0.95263 0.98091 1.70021 1.38605 1.21619 1.20007 0.86070 0.79018 0.79521 0.80609 1.19493 1.20515 1.20510 0.92635 0.92359 0.91848 0.90824 0.90903 0.88187 0.88007 0.90458 0.90183 0.91121 0.91272 0.87978 0.87977 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.33 37.16 0.31 -0.97 16 2 C -0.09 -0.72 2.70 -90.41 -0.24 -0.97 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.08 -0.63 5.55 -28.17 -0.16 -0.78 16 5 C -0.16 -1.29 9.41 -35.90 -0.34 -1.63 16 6 C -0.15 -1.30 9.16 -35.90 -0.33 -1.63 16 7 C -0.09 -0.88 4.63 -28.18 -0.13 -1.01 16 8 C -0.08 -0.82 2.26 -90.41 -0.20 -1.03 16 9 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 10 C 0.07 0.91 4.54 37.16 0.17 1.08 16 11 O -0.36 -5.74 10.02 -39.27 -0.39 -6.13 16 12 C 0.48 9.28 7.97 36.01 0.29 9.56 16 13 O -0.49 -10.87 15.61 -18.74 -0.29 -11.16 16 14 C -0.13 -2.64 6.27 36.01 0.23 -2.42 16 15 S -0.06 -1.61 20.58 -107.50 -2.21 -3.82 16 16 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 17 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 20 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.52 6.87 -51.93 -0.36 0.16 16 26 H 0.06 0.54 5.70 -51.93 -0.30 0.25 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 29 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.08 0.77 6.86 -51.93 -0.36 0.41 16 32 H 0.08 0.85 8.13 -51.92 -0.42 0.43 16 33 H 0.07 0.92 6.92 -51.93 -0.36 0.56 16 34 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 35 H 0.10 1.95 8.14 -51.92 -0.42 1.52 16 36 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -31.67 317.91 -8.17 -39.84 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.56 Total: -2.01 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.21 Total: -12.58 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.73 Total: -25.09 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.69 Total: -17.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.67 -8.17 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192495006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.686 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds