Wall clock time and date at job start Mon Mar 30 2020 01:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.64190 * 2 1 4 4 C 1.53026 * 109.64075 * 120.41457 * 2 1 3 5 5 C 1.50072 * 110.14449 * 70.46100 * 4 2 1 6 6 C 1.29446 * 124.07576 * 17.13099 * 5 4 2 7 7 C 1.50061 * 124.07264 * 359.53010 * 6 5 4 8 8 C 1.53019 * 110.15324 * 17.13191 * 7 6 5 9 9 H 1.09005 * 109.64113 * 70.24685 * 8 7 6 10 10 C 1.52999 * 109.82166 * 190.77378 * 8 7 6 11 11 O 1.45200 * 109.46903 * 294.05117 * 10 8 7 12 12 C 1.34233 * 116.99537 * 179.97438 * 11 10 8 13 13 O 1.20819 * 120.00231 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99664 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47213 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00133 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.38791 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00403 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99905 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47136 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47040 * 120.00248 * 20 18 16 23 23 H 1.48503 * 109.47275 * 239.99822 * 20 18 16 24 24 H 1.09002 * 109.47428 * 299.58958 * 1 2 3 25 25 H 1.09002 * 109.47168 * 59.58475 * 1 2 3 26 26 H 1.09000 * 109.47255 * 179.58200 * 1 2 3 27 27 H 1.09000 * 109.35986 * 190.66705 * 4 2 1 28 28 H 1.09002 * 109.36098 * 310.25808 * 4 2 1 29 29 H 1.08000 * 117.96229 * 197.11256 * 5 4 2 30 30 H 1.07999 * 117.96106 * 179.50910 * 6 5 4 31 31 H 1.08998 * 109.35728 * 256.92105 * 7 6 5 32 32 H 1.09009 * 109.24089 * 137.27026 * 7 6 5 33 33 H 1.08999 * 109.47090 * 54.04876 * 10 8 7 34 34 H 1.09001 * 109.46939 * 174.05096 * 10 8 7 35 35 H 1.09003 * 109.47047 * 300.00039 * 14 12 11 36 36 H 1.09002 * 109.47258 * 60.00027 * 14 12 11 37 37 H 0.97003 * 120.00756 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0266 0.0000 4 6 2.0443 -0.7296 1.2429 5 6 1.7742 -2.2013 1.1271 6 6 1.4896 -2.8012 0.0159 7 6 1.3799 -2.1072 -1.3101 8 6 2.0500 -0.7331 -1.2430 9 1 3.1307 -0.8557 -1.1707 10 6 1.7066 0.0733 -2.4970 11 8 2.3019 -0.5620 -3.6590 12 6 2.0933 0.0248 -4.8481 13 8 1.4347 1.0354 -4.9158 14 6 2.6805 -0.5771 -6.0987 15 16 2.2248 0.4363 -7.5275 16 6 3.0188 -0.4714 -8.8122 17 1 3.5759 -1.3660 -8.5764 18 6 2.9282 -0.0366 -10.1271 19 7 2.2488 1.0535 -10.4146 20 14 3.7706 -0.9985 -11.4890 21 1 4.4632 -2.1764 -10.9076 22 1 2.7559 -1.4567 -12.4719 23 1 4.7616 -0.1273 -12.1704 24 1 -0.3634 0.5074 0.8936 25 1 -0.3633 0.5203 -0.8863 26 1 -0.3634 -1.0276 -0.0075 27 1 3.1176 -0.5658 1.3398 28 1 1.5399 -0.3382 2.1263 29 1 1.8206 -2.7970 2.0267 30 1 1.3208 -3.8675 0.0449 31 1 0.3279 -1.9839 -1.5674 32 1 1.8702 -2.7114 -2.0734 33 1 0.6242 0.1123 -2.6188 34 1 2.0977 1.0858 -2.3962 35 1 3.7663 -0.6127 -6.0095 36 1 2.2935 -1.5874 -6.2320 37 1 2.1858 1.3577 -11.3335 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192495006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:32 Heat of formation + Delta-G solvation = -110.257106 kcal Electronic energy + Delta-G solvation = -18023.719051 eV Core-core repulsion = 15084.123901 eV Total energy + Delta-G solvation = -2939.595151 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.58933 -40.19282 -37.49037 -34.61503 -33.54350 -32.45912 -31.24060 -28.53329 -27.71780 -26.62974 -23.71923 -22.31467 -21.52165 -19.90363 -18.72985 -18.17705 -17.53091 -17.44311 -16.90843 -16.79587 -16.09379 -15.49962 -15.17978 -15.09303 -14.60434 -14.27148 -14.10999 -13.90383 -13.56187 -13.19591 -13.16296 -12.92008 -12.91263 -12.72897 -12.64252 -12.30662 -11.80907 -11.75194 -11.70028 -11.46053 -11.18753 -11.17198 -10.98404 -10.37868 -9.82929 -8.74124 -8.37834 -6.17689 1.02790 1.12984 1.41296 1.42209 1.45955 1.56551 1.89899 2.23557 2.97311 3.25503 3.55828 3.61765 3.73346 4.00470 4.11733 4.18096 4.20061 4.29799 4.38542 4.43829 4.48237 4.57408 4.58903 4.71134 4.80915 4.99598 5.02164 5.10423 5.15736 5.23638 5.26223 5.36803 5.41220 5.48679 5.81993 6.10836 6.18159 6.69855 7.04021 8.71706 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.003187 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.976721 B = 8784.828767 C = 9162.961499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.082 0.918 4 C -0.084 4.084 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.088 4.088 8 C -0.074 4.074 9 H 0.084 0.916 10 C 0.066 3.934 11 O -0.349 6.349 12 C 0.487 3.513 13 O -0.522 6.522 14 C -0.109 4.109 15 S -0.139 6.139 16 C -0.547 4.547 17 H 0.086 0.914 18 C 0.015 3.985 19 N -0.910 5.910 20 Si 1.001 2.999 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.273 1.273 24 H 0.068 0.932 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -7.028 23.249 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.121 4.121 5 C -0.173 4.173 6 C -0.181 4.181 7 C -0.125 4.125 8 C -0.093 4.093 9 H 0.103 0.897 10 C -0.008 4.008 11 O -0.266 6.266 12 C 0.330 3.670 13 O -0.411 6.411 14 C -0.257 4.257 15 S 0.088 5.912 16 C -0.695 4.695 17 H 0.104 0.896 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.822 3.178 21 H -0.180 1.180 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.744 -5.662 23.110 23.805 hybrid contribution 0.861 -1.240 -0.965 1.792 sum 0.118 -6.901 22.145 23.195 Atomic orbital electron populations 1.21963 0.94732 1.02366 1.01970 1.21167 0.96398 0.99428 0.93244 0.89965 1.20532 1.01764 0.92298 0.97490 1.22209 1.00370 0.96754 0.98013 1.22070 1.01992 0.99983 0.94087 1.20494 1.00866 0.94823 0.96309 1.21254 1.01579 0.95100 0.91365 0.89738 1.23413 0.98228 0.96890 0.82266 1.86477 1.70364 1.54242 1.15560 1.22987 0.77173 0.81911 0.84957 1.90655 1.38012 1.25394 1.87047 1.23088 1.05595 1.04665 0.92342 1.85530 1.70880 1.37166 0.97636 1.23227 1.38433 1.14184 0.93670 0.89600 1.26125 0.95707 0.96225 1.00895 1.70168 1.40157 1.23502 1.20816 0.84875 0.77866 0.78190 0.76827 1.18028 1.19879 1.19865 0.91333 0.93457 0.92116 0.90059 0.89317 0.86682 0.87274 0.90895 0.91284 0.91323 0.91242 0.86071 0.86072 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.33 71.98 0.60 -1.74 16 2 C -0.08 -1.26 2.70 -10.66 -0.03 -1.29 16 3 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.08 -1.02 5.55 29.66 0.16 -0.86 16 5 C -0.16 -2.10 9.41 27.04 0.25 -1.85 16 6 C -0.16 -2.58 9.16 27.03 0.25 -2.33 16 7 C -0.09 -1.66 4.63 29.65 0.14 -1.52 16 8 C -0.07 -1.42 2.26 -10.66 -0.02 -1.45 16 9 H 0.08 1.63 8.12 -2.38 -0.02 1.61 16 10 C 0.07 1.66 4.54 71.98 0.33 1.99 16 11 O -0.35 -10.84 10.02 -51.44 -0.52 -11.36 16 12 C 0.49 18.76 7.97 71.24 0.57 19.33 16 13 O -0.52 -23.53 15.61 21.99 0.34 -23.19 16 14 C -0.11 -4.39 6.27 71.24 0.45 -3.95 16 15 S -0.14 -7.60 20.58 -56.49 -1.16 -8.76 16 16 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 17 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 18 C 0.02 0.87 5.49 84.86 0.47 1.34 16 19 N -0.91 -55.01 13.22 21.65 0.29 -54.72 16 20 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.82 6.87 -2.39 -0.02 0.80 16 26 H 0.06 0.96 5.70 -2.39 -0.01 0.95 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 0.85 8.11 -2.39 -0.02 0.83 16 29 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 30 H 0.11 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.07 1.41 6.86 -2.39 -0.02 1.40 16 32 H 0.07 1.43 8.13 -2.38 -0.02 1.41 16 33 H 0.07 1.78 6.92 -2.39 -0.02 1.77 16 34 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 35 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 36 H 0.12 4.45 8.14 -2.39 -0.02 4.44 16 37 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.42 317.91 5.83 -62.60 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.04 Total: 12.89 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 3.80 Total: -22.53 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.29 Total: -54.72 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.17 Total: -34.54 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.16 Total: -8.76 kcal Total: -68.42 5.83 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192495006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.660 kcal (2) G-P(sol) polarization free energy of solvation -68.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds