Wall clock time and date at job start Mon Mar 30 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00150 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 H 1.09001 * 110.86296 * 52.65779 * 16 14 12 18 18 C 1.54741 * 110.97394 * 288.81036 * 16 14 12 19 19 C 1.51687 * 102.54970 * 217.66653 * 18 16 14 20 20 C 1.47479 * 125.86596 * 195.35453 * 19 18 16 21 21 O 1.21467 * 119.99739 * 0.02594 * 20 19 18 22 22 O 1.34757 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.29058 * 108.27242 * 15.39924 * 19 18 16 24 24 O 1.41391 * 112.87870 * 0.31088 * 23 19 18 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 30 30 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 31 31 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 32 32 H 1.08988 * 110.79543 * 335.94095 * 18 16 14 33 33 H 1.09002 * 110.78991 * 99.41069 * 18 16 14 34 34 H 0.96695 * 116.99456 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 1 2.4717 -1.2094 -3.8575 18 6 4.3766 -1.7902 -2.9486 19 6 5.3530 -1.6716 -4.1033 20 6 6.4087 -2.6429 -4.4455 21 8 6.5520 -3.6454 -3.7749 22 8 7.2143 -2.4181 -5.5020 23 7 5.1018 -0.5742 -4.7345 24 8 4.0327 0.1551 -4.1651 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.9033 -0.5281 4.4375 29 1 0.7376 -2.1442 -1.9994 30 1 2.4629 -2.5818 -1.9864 31 1 1.5295 -2.5968 -0.4710 32 1 4.8593 -1.5336 -2.0057 33 1 3.9484 -2.7916 -2.9053 34 1 7.8918 -3.0829 -5.6867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230760150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:14 Heat of formation + Delta-G solvation = -76.544234 kcal Electronic energy + Delta-G solvation = -20956.433401 eV Core-core repulsion = 17472.006936 eV Total energy + Delta-G solvation = -3484.426465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18463 -40.21033 -38.76383 -36.61892 -35.72569 -33.45391 -33.10437 -31.57794 -29.90826 -26.54007 -25.69338 -25.30429 -24.62130 -21.51242 -20.73588 -18.93274 -18.52606 -17.79744 -17.30529 -16.54638 -16.21211 -16.12258 -15.78177 -15.29496 -14.82916 -14.23371 -13.78652 -13.58654 -13.33948 -13.05627 -12.81093 -12.67258 -12.32770 -12.11997 -12.03067 -12.00301 -11.65937 -11.44724 -11.26145 -11.18477 -10.81268 -10.26726 -10.13476 -9.71859 -9.47065 -9.20371 -8.71371 -7.95635 -6.22754 -4.24801 0.37748 1.90054 2.30088 2.63459 2.86818 3.18469 3.32946 3.34675 3.52004 3.96179 4.14150 4.28403 4.36963 4.58303 4.77760 4.96456 5.10781 5.23889 5.39864 5.54257 5.76723 5.85433 6.13503 6.15343 6.23396 6.36416 6.60147 6.72248 6.97146 7.16418 7.32773 7.50187 7.93527 8.32223 8.58266 8.76914 9.37264 10.89526 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.004759 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.195985 B = 5881.764123 C = 6266.947128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.230 3.770 3 H 0.064 0.936 4 C -0.532 4.532 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.578 5.578 13 C 0.070 3.930 14 C 0.512 3.488 15 O -0.523 6.523 16 C 0.026 3.974 17 H 0.118 0.882 18 C -0.120 4.120 19 C 0.053 3.947 20 C 0.567 3.433 21 O -0.482 6.482 22 O -0.495 6.495 23 N -0.205 5.205 24 O -0.143 6.143 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.267 0.733 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -6.170 -15.756 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.129 3.871 3 H 0.082 0.918 4 C -0.571 4.571 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.310 5.310 13 C -0.074 4.074 14 C 0.296 3.704 15 O -0.399 6.399 16 C -0.036 4.036 17 H 0.136 0.864 18 C -0.159 4.159 19 C -0.140 4.140 20 C 0.406 3.594 21 O -0.366 6.366 22 O -0.306 6.306 23 N 0.053 4.947 24 O -0.168 6.168 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.402 -4.745 -16.018 17.049 hybrid contribution -0.528 -0.326 0.833 1.039 sum 2.874 -5.070 -15.185 16.265 Atomic orbital electron populations 1.22451 0.98712 1.01271 0.99461 1.19375 0.90214 0.95235 0.82261 0.91791 1.21105 1.33134 1.14460 0.88356 0.90146 1.24848 0.95570 0.96560 0.95582 1.69866 1.44893 1.40073 0.98042 0.86923 0.80430 0.83778 0.77648 1.20297 1.22032 1.18758 1.47825 1.48631 1.11975 1.22555 1.21906 0.99262 0.82562 1.03644 1.19643 0.80219 0.87219 0.83368 1.90728 1.57161 1.16434 1.75606 1.23800 0.96294 0.90335 0.93179 0.86416 1.22890 0.92319 1.02437 0.98289 1.24680 0.97433 0.95145 0.96713 1.19113 0.79231 0.82953 0.78079 1.91000 1.68696 1.26772 1.50085 1.84641 1.45754 1.54013 1.46232 1.78554 0.99784 1.02758 1.13647 1.91441 1.36100 1.29059 1.60157 0.92969 0.92415 0.94702 0.92298 0.93111 0.92386 0.88801 0.85928 0.85665 0.71714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.67 37.16 0.32 -2.96 16 2 C 0.23 5.28 2.23 -69.08 -0.15 5.13 16 3 H 0.06 1.65 5.96 -51.93 -0.31 1.34 16 4 C -0.53 -14.00 8.57 -34.44 -0.30 -14.30 16 5 H 0.08 2.25 7.58 -52.49 -0.40 1.85 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.05 13.96 55.43 0.77 -25.27 16 8 Si 0.88 21.21 24.37 -169.99 -4.14 17.07 16 9 H -0.28 -6.33 6.87 56.52 0.39 -5.94 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.58 -10.93 2.75 -175.27 -0.48 -11.42 16 13 C 0.07 0.98 9.09 59.85 0.54 1.53 16 14 C 0.51 9.75 7.01 -10.99 -0.08 9.67 16 15 O -0.52 -12.35 15.92 -13.27 -0.21 -12.57 16 16 C 0.03 0.37 3.25 -26.97 -0.09 0.28 16 17 H 0.12 1.28 7.93 -51.93 -0.41 0.87 16 18 C -0.12 -1.46 5.41 -26.48 -0.14 -1.60 16 19 C 0.05 0.64 7.30 -79.51 -0.58 0.06 16 20 C 0.57 5.91 8.34 34.50 0.29 6.20 16 21 O -0.48 -5.88 17.74 -19.24 -0.34 -6.22 16 22 O -0.49 -3.79 13.43 -40.65 -0.55 -4.34 16 23 N -0.21 -2.94 12.51 35.26 0.44 -2.50 16 24 O -0.14 -2.37 11.83 -30.21 -0.36 -2.72 16 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 26 H 0.06 1.08 7.67 -51.93 -0.40 0.68 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.63 4.51 -51.93 -0.23 0.40 16 31 H 0.09 1.49 7.02 -51.93 -0.36 1.12 16 32 H 0.12 1.66 7.90 -51.94 -0.41 1.25 16 33 H 0.13 1.15 6.67 -51.93 -0.35 0.80 16 34 H 0.42 0.91 9.11 45.56 0.42 1.33 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -34.66 290.56 -3.42 -38.08 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -2.65 Total: -0.54 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.28 Total: 6.05 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.73 Total: -39.19 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.46 Total: -25.85 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.14 Total: 17.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.66 -3.42 -38.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.466 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds