Wall clock time and date at job start Mon Mar 30 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00150 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 H 1.09001 * 110.86296 * 52.65779 * 16 14 12 18 18 C 1.54741 * 110.97394 * 288.81036 * 16 14 12 19 19 C 1.51687 * 102.54970 * 217.66653 * 18 16 14 20 20 C 1.47479 * 125.86596 * 195.35453 * 19 18 16 21 21 O 1.21467 * 119.99739 * 0.02594 * 20 19 18 22 22 O 1.34757 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.29058 * 108.27242 * 15.39924 * 19 18 16 24 24 O 1.41391 * 112.87870 * 0.31088 * 23 19 18 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 30 30 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 31 31 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 32 32 H 1.08988 * 110.79543 * 335.94095 * 18 16 14 33 33 H 1.09002 * 110.78991 * 99.41069 * 18 16 14 34 34 H 0.96695 * 116.99456 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 1 2.4717 -1.2094 -3.8575 18 6 4.3766 -1.7902 -2.9486 19 6 5.3530 -1.6716 -4.1033 20 6 6.4087 -2.6429 -4.4455 21 8 6.5520 -3.6454 -3.7749 22 8 7.2143 -2.4181 -5.5020 23 7 5.1018 -0.5742 -4.7345 24 8 4.0327 0.1551 -4.1651 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.9033 -0.5281 4.4375 29 1 0.7376 -2.1442 -1.9994 30 1 2.4629 -2.5818 -1.9864 31 1 1.5295 -2.5968 -0.4710 32 1 4.8593 -1.5336 -2.0057 33 1 3.9484 -2.7916 -2.9053 34 1 7.8918 -3.0829 -5.6867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230760150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:14 Heat of formation + Delta-G solvation = -104.028218 kcal Electronic energy + Delta-G solvation = -20957.625196 eV Core-core repulsion = 17472.006936 eV Total energy + Delta-G solvation = -3485.618260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.24615 -41.18777 -40.12130 -37.38135 -37.34686 -34.93718 -34.51512 -33.15152 -31.33993 -27.81985 -27.19436 -26.61262 -25.89191 -23.05135 -21.64360 -20.39700 -19.39262 -19.09902 -18.63741 -18.12246 -17.57735 -17.13499 -17.01067 -16.60503 -16.40380 -15.42631 -15.22719 -14.87031 -14.50836 -14.44409 -14.18156 -13.99804 -13.98841 -13.63700 -13.30019 -13.04151 -12.93809 -12.77656 -12.66992 -12.37054 -12.16618 -12.05392 -11.61398 -11.39069 -11.32243 -10.80247 -10.66746 -9.51903 -8.35489 -6.40053 -0.55997 0.95317 1.26352 1.36882 1.38650 1.44270 1.45071 1.62348 2.27376 2.28313 2.87832 3.00219 3.06882 3.36173 3.55455 3.72087 4.08149 4.27241 4.37967 4.45790 4.50892 4.56768 4.60558 4.78446 4.98175 5.09568 5.19651 5.27339 5.46374 5.59426 5.65971 6.16093 6.54445 6.63265 6.72198 7.07366 7.27517 8.79929 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.030191 B = 0.004759 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.195985 B = 5881.764123 C = 6266.947128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.231 3.769 3 H 0.030 0.970 4 C -0.525 4.525 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.936 3.064 9 H -0.252 1.252 10 H -0.298 1.298 11 H -0.264 1.264 12 N -0.581 5.581 13 C 0.063 3.937 14 C 0.505 3.495 15 O -0.581 6.581 16 C 0.035 3.965 17 H 0.162 0.838 18 C -0.120 4.120 19 C 0.071 3.929 20 C 0.579 3.421 21 O -0.499 6.499 22 O -0.489 6.489 23 N -0.222 5.222 24 O -0.180 6.180 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.268 0.732 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.163 0.837 34 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -7.498 -17.815 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.128 3.872 3 H 0.048 0.952 4 C -0.564 4.564 5 H 0.072 0.928 6 C -0.173 4.173 7 N -0.576 5.576 8 Si 0.764 3.236 9 H -0.178 1.178 10 H -0.226 1.226 11 H -0.189 1.189 12 N -0.312 5.312 13 C -0.079 4.079 14 C 0.291 3.709 15 O -0.462 6.462 16 C -0.026 4.026 17 H 0.179 0.821 18 C -0.159 4.159 19 C -0.123 4.123 20 C 0.419 3.581 21 O -0.384 6.384 22 O -0.303 6.303 23 N 0.034 4.966 24 O -0.201 6.201 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.181 0.819 34 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 2.613 -6.110 -18.119 19.300 hybrid contribution -0.127 -0.011 1.411 1.416 sum 2.486 -6.121 -16.709 17.967 Atomic orbital electron populations 1.22307 0.96157 1.02680 1.00002 1.19036 0.92109 0.93408 0.82682 0.95232 1.21330 1.31873 1.13321 0.89868 0.92847 1.25578 0.97073 0.99219 0.95430 1.69988 1.46985 1.42014 0.98602 0.86050 0.80121 0.80424 0.77010 1.17751 1.22590 1.18908 1.47840 1.48381 1.13739 1.21252 1.22211 1.02336 0.79627 1.03683 1.20466 0.79160 0.86774 0.84483 1.90694 1.59108 1.19174 1.77190 1.23832 0.97904 0.89767 0.91082 0.82059 1.22952 0.91912 1.03646 0.97419 1.24964 0.97128 0.94420 0.95744 1.18764 0.78996 0.82026 0.78352 1.91010 1.69193 1.27307 1.50872 1.84599 1.45971 1.55048 1.44696 1.78593 0.99812 1.03577 1.14638 1.91424 1.37189 1.30823 1.60694 0.94053 0.90564 0.92446 0.92262 0.89575 0.88900 0.90782 0.87604 0.81917 0.68774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 8.67 71.98 0.62 -5.34 16 2 C 0.23 10.54 2.23 44.24 0.10 10.64 16 3 H 0.03 1.57 5.96 -2.39 -0.01 1.55 16 4 C -0.53 -28.10 8.57 25.60 0.22 -27.88 16 5 H 0.05 3.07 7.58 -2.91 -0.02 3.05 16 6 C 0.03 1.46 5.45 84.65 0.46 1.92 16 7 N -0.94 -55.97 13.96 21.45 0.30 -55.67 16 8 Si 0.94 44.02 24.37 68.60 1.67 45.69 16 9 H -0.25 -10.81 6.87 99.48 0.68 -10.13 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 12 N -0.58 -21.33 2.75 -826.82 -2.28 -23.61 16 13 C 0.06 1.59 9.09 127.77 1.16 2.75 16 14 C 0.51 18.95 7.01 87.66 0.61 19.56 16 15 O -0.58 -28.20 15.92 15.00 0.24 -27.96 16 16 C 0.04 0.94 3.25 30.44 0.10 1.04 16 17 H 0.16 2.82 7.93 -2.39 -0.02 2.80 16 18 C -0.12 -2.62 5.41 30.76 0.17 -2.46 16 19 C 0.07 1.56 7.30 45.72 0.33 1.89 16 20 C 0.58 10.48 8.34 70.26 0.59 11.06 16 21 O -0.50 -10.80 17.74 19.94 0.35 -10.44 16 22 O -0.49 -6.01 13.43 -56.67 -0.76 -6.77 16 23 N -0.22 -6.01 12.51 -42.36 -0.53 -6.54 16 24 O -0.18 -5.78 11.83 -20.31 -0.24 -6.02 16 25 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 26 H 0.08 2.64 7.67 -2.39 -0.02 2.62 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.66 4.51 -2.39 -0.01 1.65 16 31 H 0.07 2.22 7.02 -2.39 -0.02 2.20 16 32 H 0.11 2.76 7.90 -2.39 -0.02 2.74 16 33 H 0.16 2.28 6.67 -2.39 -0.02 2.26 16 34 H 0.45 0.43 9.11 -74.06 -0.67 -0.25 16 Total: -1.00 -78.75 290.56 3.53 -75.21 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 0.41 Total: 2.92 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 4.36 Total: 13.19 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -2.51 Total: -85.81 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -0.41 Total: -51.20 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.67 Total: 45.69 kcal Total: -78.75 3.53 -75.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.814 kcal (2) G-P(sol) polarization free energy of solvation -78.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds