Wall clock time and date at job start Mon Mar 30 2020 00:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47241 * 2 1 4 4 C 1.50699 * 109.47095 * 120.01007 * 2 1 3 5 5 H 1.07993 * 120.00177 * 120.00127 * 4 2 1 6 6 C 1.37878 * 119.99386 * 299.99250 * 4 2 1 7 7 N 1.31518 * 119.99695 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00320 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47352 * 90.00026 * 8 6 4 10 10 H 1.48501 * 109.47221 * 209.99812 * 8 6 4 11 11 H 1.48496 * 109.47339 * 329.99713 * 8 6 4 12 12 N 1.46508 * 109.46715 * 240.00173 * 2 1 3 13 13 C 1.46496 * 120.00514 * 300.00095 * 12 2 1 14 14 C 1.34781 * 119.99370 * 119.99978 * 12 2 1 15 15 O 1.21277 * 120.00114 * 4.68464 * 14 12 2 16 16 C 1.50705 * 119.99509 * 184.68064 * 14 12 2 17 17 H 1.09002 * 110.85913 * 306.34194 * 16 14 12 18 18 C 1.54730 * 110.97339 * 70.14463 * 16 14 12 19 19 C 1.51690 * 102.55116 * 142.36418 * 18 16 14 20 20 C 1.47470 * 125.86588 * 164.62818 * 19 18 16 21 21 O 1.21465 * 120.00227 * 0.02562 * 20 19 18 22 22 O 1.34754 * 119.99810 * 180.02562 * 20 19 18 23 23 N 1.29059 * 108.26869 * 344.61376 * 19 18 16 24 24 O 1.41385 * 112.87954 * 359.67608 * 23 19 18 25 25 H 1.08997 * 109.46778 * 299.99441 * 1 2 3 26 26 H 1.08996 * 109.47147 * 59.99501 * 1 2 3 27 27 H 1.08998 * 109.46873 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99834 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47004 * 264.38729 * 13 12 2 30 30 H 1.09004 * 109.46921 * 24.38207 * 13 12 2 31 31 H 1.08999 * 109.47171 * 144.38193 * 13 12 2 32 32 H 1.09008 * 110.79607 * 24.10332 * 18 16 14 33 33 H 1.08995 * 110.96280 * 260.70663 * 18 16 14 34 34 H 0.96699 * 116.99728 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 2.1381 -0.8594 3.5564 8 14 0.6250 1.2788 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9762 1.9948 3.9069 11 1 0.8473 2.1764 1.4922 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4283 14 6 2.7932 -0.0355 -2.0834 15 8 3.1564 1.0979 -1.8505 16 6 3.2082 -0.7115 -3.3648 17 1 3.6817 -1.6720 -3.1612 18 6 2.0013 -0.8800 -4.3183 19 6 2.6187 -0.6237 -5.6799 20 6 2.0106 -0.9582 -6.9811 21 8 0.9180 -1.4874 -7.0228 22 8 2.6670 -0.6769 -8.1238 23 7 3.7674 -0.0623 -5.5042 24 8 4.0780 0.1387 -4.1396 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9035 -0.5283 4.4374 29 1 2.4644 -2.7354 -1.0601 30 1 0.7394 -2.3264 -0.9009 31 1 1.5260 -2.2611 -2.4963 32 1 1.2289 -0.1428 -4.0988 33 1 1.5970 -1.8905 -4.2607 34 1 2.2281 -0.9144 -8.9521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230760154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:18 Heat of formation + Delta-G solvation = -76.048739 kcal Electronic energy + Delta-G solvation = -20923.930301 eV Core-core repulsion = 17439.525322 eV Total energy + Delta-G solvation = -3484.404979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.23362 -40.26109 -38.78440 -36.68801 -35.74151 -33.49472 -33.10077 -31.57897 -29.95521 -26.57098 -25.75424 -25.26622 -24.68670 -21.53316 -20.78173 -18.92860 -18.57743 -17.81788 -17.28948 -16.68297 -16.27695 -16.19787 -15.72691 -15.36010 -14.66758 -14.33459 -13.97709 -13.63050 -13.36381 -13.06541 -12.79485 -12.75176 -12.33178 -12.15342 -12.05043 -11.98569 -11.73517 -11.52039 -11.27860 -11.24647 -10.78002 -10.27239 -10.17385 -9.72946 -9.45464 -9.21570 -8.70731 -7.95392 -6.21259 -4.23059 0.31842 1.84600 2.23465 2.58795 2.85366 3.18136 3.32973 3.33951 3.48341 3.91015 4.09480 4.28853 4.31841 4.54101 4.75809 4.92389 5.11281 5.18954 5.28447 5.49624 5.78253 5.79593 6.05215 6.13265 6.20280 6.34822 6.56226 6.72041 6.95166 7.14289 7.26122 7.51299 7.93578 8.33455 8.58134 8.79599 9.38559 10.91315 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037246 B = 0.004446 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.581271 B = 6296.714680 C = 6459.655258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.231 3.769 3 H 0.064 0.936 4 C -0.531 4.531 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.579 5.579 13 C 0.076 3.924 14 C 0.513 3.487 15 O -0.522 6.522 16 C 0.025 3.975 17 H 0.121 0.879 18 C -0.118 4.118 19 C 0.049 3.951 20 C 0.568 3.432 21 O -0.485 6.485 22 O -0.494 6.494 23 N -0.203 5.203 24 O -0.140 6.140 25 H 0.053 0.947 26 H 0.034 0.966 27 H 0.058 0.942 28 H 0.267 0.733 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -3.753 -19.358 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.129 3.871 3 H 0.082 0.918 4 C -0.569 4.569 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.188 1.188 12 N -0.311 5.311 13 C -0.067 4.067 14 C 0.296 3.704 15 O -0.397 6.397 16 C -0.037 4.037 17 H 0.138 0.862 18 C -0.158 4.158 19 C -0.144 4.144 20 C 0.408 3.592 21 O -0.369 6.369 22 O -0.306 6.306 23 N 0.055 4.945 24 O -0.165 6.165 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.874 -2.669 -19.106 19.383 hybrid contribution -1.523 0.045 0.265 1.546 sum -3.396 -2.624 -18.841 19.324 Atomic orbital electron populations 1.22484 0.98770 1.01283 0.99516 1.19382 0.90065 0.95220 0.82403 0.91792 1.21108 1.33033 1.14395 0.88340 0.90217 1.24858 0.95625 0.96543 0.95595 1.69866 1.44917 1.40125 0.98029 0.86925 0.80395 0.83789 0.77657 1.20315 1.22003 1.18816 1.47824 1.48762 1.11939 1.22572 1.21817 1.02687 0.82445 0.99775 1.19615 0.80064 0.86720 0.84026 1.90733 1.53928 1.18316 1.76772 1.23818 0.90603 0.96290 0.92957 0.86184 1.22847 0.99750 1.07410 0.85770 1.24655 0.94121 1.01384 0.94220 1.19112 0.82114 0.75110 0.82904 1.90987 1.19713 1.38698 1.87480 1.84647 1.51761 1.77280 1.16866 1.78560 1.12166 1.04834 0.98911 1.91462 1.55040 1.61854 1.08152 0.92872 0.94716 0.92307 0.92316 0.92307 0.89710 0.92832 0.86423 0.85703 0.71694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.66 37.16 0.32 -2.94 16 2 C 0.23 5.28 2.22 -69.07 -0.15 5.13 16 3 H 0.06 1.65 5.97 -51.93 -0.31 1.34 16 4 C -0.53 -14.14 8.95 -34.44 -0.31 -14.45 16 5 H 0.08 2.28 7.89 -52.49 -0.41 1.87 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 8 Si 0.88 21.24 24.37 -169.99 -4.14 17.10 16 9 H -0.28 -6.32 6.87 56.52 0.39 -5.93 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 12 N -0.58 -10.94 2.75 -175.26 -0.48 -11.42 16 13 C 0.08 1.07 9.24 59.84 0.55 1.63 16 14 C 0.51 9.73 6.99 -10.98 -0.08 9.65 16 15 O -0.52 -12.33 15.93 -13.27 -0.21 -12.54 16 16 C 0.03 0.36 3.25 -26.97 -0.09 0.27 16 17 H 0.12 1.38 7.89 -51.93 -0.41 0.97 16 18 C -0.12 -1.30 5.48 -26.48 -0.15 -1.44 16 19 C 0.05 0.55 7.30 -79.51 -0.58 -0.03 16 20 C 0.57 5.42 8.34 34.49 0.29 5.71 16 21 O -0.48 -5.38 17.74 -19.24 -0.34 -5.72 16 22 O -0.49 -3.47 13.43 -40.64 -0.55 -4.01 16 23 N -0.20 -2.82 12.51 35.26 0.44 -2.38 16 24 O -0.14 -2.31 11.83 -30.19 -0.36 -2.67 16 25 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 1.08 6.67 -51.93 -0.35 0.73 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.21 6.44 -51.93 -0.33 0.87 16 31 H 0.05 0.53 4.79 -51.93 -0.25 0.29 16 32 H 0.12 1.32 7.91 -51.92 -0.41 0.91 16 33 H 0.12 1.00 6.73 -51.93 -0.35 0.65 16 34 H 0.42 0.63 9.11 45.56 0.42 1.05 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -35.06 290.16 -3.38 -38.45 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -2.60 Total: -1.24 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.29 Total: 5.57 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.73 Total: -39.31 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.46 Total: -24.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.14 Total: 17.10 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.06 -3.38 -38.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.603 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds