Wall clock time and date at job start Mon Mar 30 2020 00:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47241 * 2 1 4 4 C 1.50699 * 109.47095 * 120.01007 * 2 1 3 5 5 H 1.07993 * 120.00177 * 120.00127 * 4 2 1 6 6 C 1.37878 * 119.99386 * 299.99250 * 4 2 1 7 7 N 1.31518 * 119.99695 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00320 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47352 * 90.00026 * 8 6 4 10 10 H 1.48501 * 109.47221 * 209.99812 * 8 6 4 11 11 H 1.48496 * 109.47339 * 329.99713 * 8 6 4 12 12 N 1.46508 * 109.46715 * 240.00173 * 2 1 3 13 13 C 1.46496 * 120.00514 * 300.00095 * 12 2 1 14 14 C 1.34781 * 119.99370 * 119.99978 * 12 2 1 15 15 O 1.21277 * 120.00114 * 4.68464 * 14 12 2 16 16 C 1.50705 * 119.99509 * 184.68064 * 14 12 2 17 17 H 1.09002 * 110.85913 * 306.34194 * 16 14 12 18 18 C 1.54730 * 110.97339 * 70.14463 * 16 14 12 19 19 C 1.51690 * 102.55116 * 142.36418 * 18 16 14 20 20 C 1.47470 * 125.86588 * 164.62818 * 19 18 16 21 21 O 1.21465 * 120.00227 * 0.02562 * 20 19 18 22 22 O 1.34754 * 119.99810 * 180.02562 * 20 19 18 23 23 N 1.29059 * 108.26869 * 344.61376 * 19 18 16 24 24 O 1.41385 * 112.87954 * 359.67608 * 23 19 18 25 25 H 1.08997 * 109.46778 * 299.99441 * 1 2 3 26 26 H 1.08996 * 109.47147 * 59.99501 * 1 2 3 27 27 H 1.08998 * 109.46873 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99834 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47004 * 264.38729 * 13 12 2 30 30 H 1.09004 * 109.46921 * 24.38207 * 13 12 2 31 31 H 1.08999 * 109.47171 * 144.38193 * 13 12 2 32 32 H 1.09008 * 110.79607 * 24.10332 * 18 16 14 33 33 H 1.08995 * 110.96280 * 260.70663 * 18 16 14 34 34 H 0.96699 * 116.99728 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 2.1381 -0.8594 3.5564 8 14 0.6250 1.2788 2.6542 9 1 -0.8026 0.8726 2.6999 10 1 0.9762 1.9948 3.9069 11 1 0.8473 2.1764 1.4922 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4283 14 6 2.7932 -0.0355 -2.0834 15 8 3.1564 1.0979 -1.8505 16 6 3.2082 -0.7115 -3.3648 17 1 3.6817 -1.6720 -3.1612 18 6 2.0013 -0.8800 -4.3183 19 6 2.6187 -0.6237 -5.6799 20 6 2.0106 -0.9582 -6.9811 21 8 0.9180 -1.4874 -7.0228 22 8 2.6670 -0.6769 -8.1238 23 7 3.7674 -0.0623 -5.5042 24 8 4.0780 0.1387 -4.1396 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9035 -0.5283 4.4374 29 1 2.4644 -2.7354 -1.0601 30 1 0.7394 -2.3264 -0.9009 31 1 1.5260 -2.2611 -2.4963 32 1 1.2289 -0.1428 -4.0988 33 1 1.5970 -1.8905 -4.2607 34 1 2.2281 -0.9144 -8.9521 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230760154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:18 Heat of formation + Delta-G solvation = -104.075467 kcal Electronic energy + Delta-G solvation = -20925.145631 eV Core-core repulsion = 17439.525322 eV Total energy + Delta-G solvation = -3485.620309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.23598 -41.17641 -40.11917 -37.38663 -37.33910 -34.93762 -34.50431 -33.12648 -31.35509 -27.85627 -27.16703 -26.59886 -25.89090 -23.05691 -21.61323 -20.36927 -19.37616 -19.02740 -18.69623 -18.20987 -17.53324 -17.12449 -16.99985 -16.74604 -16.06869 -15.67832 -15.19817 -14.87511 -14.48129 -14.46623 -14.14267 -14.01132 -13.99199 -13.60503 -13.32941 -13.03597 -12.98810 -12.75908 -12.58113 -12.35847 -12.14741 -12.05641 -11.60769 -11.40391 -11.30131 -10.80460 -10.67442 -9.52733 -8.35506 -6.40517 -0.54002 0.95090 1.26269 1.36867 1.42193 1.44395 1.47945 1.58468 2.27298 2.28117 2.88351 3.00095 3.06157 3.36428 3.57524 3.75226 4.10380 4.27849 4.38649 4.43935 4.46825 4.58473 4.61538 4.75226 4.96856 5.08183 5.20868 5.30292 5.44644 5.60481 5.67260 6.16187 6.53789 6.63421 6.73606 7.07052 7.27031 8.80396 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037246 B = 0.004446 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.581271 B = 6296.714680 C = 6459.655258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.231 3.769 3 H 0.030 0.970 4 C -0.527 4.527 5 H 0.048 0.952 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.940 3.060 9 H -0.250 1.250 10 H -0.298 1.298 11 H -0.263 1.263 12 N -0.582 5.582 13 C 0.069 3.931 14 C 0.506 3.494 15 O -0.581 6.581 16 C 0.032 3.968 17 H 0.150 0.850 18 C -0.115 4.115 19 C 0.071 3.929 20 C 0.580 3.420 21 O -0.496 6.496 22 O -0.490 6.490 23 N -0.226 5.226 24 O -0.183 6.183 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.268 0.732 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.166 0.834 34 H 0.448 0.552 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -4.676 -21.904 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.128 3.872 3 H 0.048 0.952 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.767 3.233 9 H -0.175 1.175 10 H -0.226 1.226 11 H -0.188 1.188 12 N -0.313 5.313 13 C -0.072 4.072 14 C 0.292 3.708 15 O -0.461 6.461 16 C -0.030 4.030 17 H 0.167 0.833 18 C -0.154 4.154 19 C -0.123 4.123 20 C 0.420 3.580 21 O -0.381 6.381 22 O -0.305 6.305 23 N 0.029 4.971 24 O -0.204 6.204 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.183 0.817 34 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges -3.831 -3.632 -21.689 22.323 hybrid contribution -0.860 0.263 0.920 1.286 sum -4.690 -3.369 -20.770 21.557 Atomic orbital electron populations 1.22331 0.95876 1.02837 1.00215 1.19050 0.92199 0.93342 0.82644 0.95208 1.21346 1.31882 1.13232 0.90109 0.93408 1.25632 0.97156 0.99365 0.95357 1.69997 1.47011 1.42145 0.98632 0.86004 0.80071 0.80190 0.77052 1.17527 1.22623 1.18783 1.47840 1.48533 1.13663 1.21265 1.22131 1.02568 0.79418 1.03126 1.20454 0.78824 0.86140 0.85387 1.90697 1.55991 1.21054 1.78324 1.23796 0.92205 0.96091 0.90862 0.83293 1.22941 0.98269 1.09787 0.84405 1.25026 0.93074 0.98711 0.95454 1.18736 0.81641 0.74772 0.82882 1.91000 1.20142 1.39372 1.87634 1.84607 1.51766 1.76680 1.17445 1.78609 1.13989 1.07287 0.97171 1.91447 1.56047 1.63170 1.09758 0.94005 0.92062 0.90362 0.92252 0.92509 0.89566 0.87851 0.86228 0.81693 0.68765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.87 8.66 71.98 0.62 -5.25 16 2 C 0.23 10.54 2.22 44.25 0.10 10.64 16 3 H 0.03 1.58 5.97 -2.39 -0.01 1.56 16 4 C -0.53 -28.66 8.95 25.60 0.23 -28.43 16 5 H 0.05 2.83 7.89 -2.91 -0.02 2.81 16 6 C 0.02 1.35 5.45 84.65 0.46 1.81 16 7 N -0.94 -56.69 13.96 21.45 0.30 -56.39 16 8 Si 0.94 44.05 24.37 68.60 1.67 45.72 16 9 H -0.25 -10.60 6.87 99.48 0.68 -9.92 16 10 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.26 -12.21 6.53 99.48 0.65 -11.56 16 12 N -0.58 -21.42 2.75 -826.78 -2.28 -23.69 16 13 C 0.07 1.76 9.24 127.77 1.18 2.94 16 14 C 0.51 19.04 6.99 87.66 0.61 19.65 16 15 O -0.58 -28.31 15.93 14.98 0.24 -28.07 16 16 C 0.03 0.85 3.25 30.44 0.10 0.95 16 17 H 0.15 3.02 7.89 -2.39 -0.02 3.00 16 18 C -0.12 -2.11 5.48 30.75 0.17 -1.94 16 19 C 0.07 1.40 7.30 45.72 0.33 1.73 16 20 C 0.58 9.02 8.34 70.26 0.59 9.60 16 21 O -0.50 -9.06 17.74 19.95 0.35 -8.70 16 22 O -0.49 -5.19 13.43 -56.65 -0.76 -5.95 16 23 N -0.23 -5.93 12.51 -42.36 -0.53 -6.46 16 24 O -0.18 -5.95 11.83 -20.30 -0.24 -6.19 16 25 H 0.04 1.68 3.27 -2.39 -0.01 1.67 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.08 2.63 6.67 -2.39 -0.02 2.62 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 2.21 6.44 -2.39 -0.02 2.19 16 31 H 0.10 1.57 4.79 -2.39 -0.01 1.56 16 32 H 0.12 2.27 7.91 -2.38 -0.02 2.25 16 33 H 0.17 1.68 6.73 -2.39 -0.02 1.67 16 34 H 0.45 -0.35 9.11 -74.06 -0.67 -1.03 16 Total: -1.00 -80.32 290.16 3.56 -76.76 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: 0.41 Total: 1.29 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 4.39 Total: 11.70 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.51 Total: -86.54 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.41 Total: -48.92 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Total: -80.32 3.56 -76.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.318 kcal (2) G-P(sol) polarization free energy of solvation -80.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds