Wall clock time and date at job start Mon Mar 30 2020 00:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 H 1.08998 * 110.85877 * 304.29623 * 16 14 12 18 18 C 1.54741 * 110.97801 * 68.09708 * 16 14 12 19 19 C 1.51679 * 102.54885 * 142.33324 * 18 16 14 20 20 C 1.47476 * 125.86497 * 164.61284 * 19 18 16 21 21 O 1.21473 * 119.99888 * 359.97438 * 20 19 18 22 22 O 1.34752 * 120.00222 * 179.97438 * 20 19 18 23 23 N 1.29062 * 108.27483 * 344.61143 * 19 18 16 24 24 O 1.41438 * 112.89212 * 359.70844 * 23 19 18 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 1.09001 * 110.78927 * 260.59986 * 18 16 14 33 33 H 1.08994 * 110.79091 * 23.87254 * 18 16 14 34 34 H 0.96703 * 117.00246 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 1 2.4679 -1.1646 3.8856 18 6 4.3213 -1.8428 2.9396 19 6 5.3318 -1.7473 4.0668 20 6 6.3526 -2.7582 4.4000 21 8 6.4344 -3.7777 3.7446 22 8 7.1947 -2.5509 5.4314 23 7 5.1449 -0.6296 4.6843 24 8 4.0930 0.1362 4.1297 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 3.8492 -2.8251 2.9253 33 1 4.7874 -1.6252 1.9787 34 1 7.8466 -3.2420 5.6117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230760156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:20 Heat of formation + Delta-G solvation = -86.317942 kcal Electronic energy + Delta-G solvation = -20919.753628 eV Core-core repulsion = 17434.903343 eV Total energy + Delta-G solvation = -3484.850285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12487 -40.15760 -38.61095 -36.61037 -35.52882 -33.40329 -33.12569 -31.30439 -29.14618 -26.42354 -25.65485 -25.32250 -24.56105 -21.32512 -20.69258 -18.88923 -18.50626 -17.73380 -17.09640 -16.34061 -16.15015 -16.07612 -15.55430 -15.23881 -14.57078 -14.20045 -13.84373 -13.50205 -13.22816 -12.80607 -12.78437 -12.55505 -12.09604 -12.01106 -11.72136 -11.62679 -11.43116 -11.22307 -11.12543 -10.88429 -10.79690 -10.35751 -10.23854 -10.09800 -9.29059 -9.08623 -8.49678 -7.79218 -6.13944 -4.22844 0.40369 1.93532 2.32047 2.70114 3.00279 3.24336 3.30071 3.31599 3.64008 4.02646 4.21268 4.33065 4.41336 4.66590 4.86714 5.02747 5.17698 5.35904 5.40794 5.53320 5.85827 5.88119 6.13927 6.61605 6.68540 6.73035 6.94447 7.25754 7.33856 7.37583 7.62154 7.91169 8.07752 8.32217 8.67003 8.84431 9.43846 10.91400 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.004918 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.408617 B = 5691.730898 C = 6321.532773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.583 5.583 13 C 0.078 3.922 14 C 0.509 3.491 15 O -0.523 6.523 16 C 0.024 3.976 17 H 0.117 0.883 18 C -0.118 4.118 19 C 0.051 3.949 20 C 0.567 3.433 21 O -0.484 6.484 22 O -0.495 6.495 23 N -0.206 5.206 24 O -0.142 6.142 25 H 0.032 0.968 26 H 0.013 0.987 27 H 0.096 0.904 28 H 0.265 0.735 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 -9.796 12.903 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.066 4.066 14 C 0.292 3.708 15 O -0.399 6.399 16 C -0.038 4.038 17 H 0.135 0.865 18 C -0.157 4.157 19 C -0.142 4.142 20 C 0.407 3.593 21 O -0.368 6.368 22 O -0.306 6.306 23 N 0.052 4.948 24 O -0.167 6.167 25 H 0.051 0.949 26 H 0.032 0.968 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 5.658 -8.225 13.202 16.552 hybrid contribution 0.324 -1.547 -1.397 2.110 sum 5.982 -9.773 11.805 16.452 Atomic orbital electron populations 1.22110 0.97899 0.99521 1.01109 1.19041 0.91065 0.94570 0.79403 0.91678 1.21234 1.32258 1.13165 0.90138 0.92209 1.24889 0.94843 0.94936 0.98998 1.69863 1.36041 1.22468 1.24037 0.86530 0.79257 0.79555 0.81901 1.21124 1.20225 1.20180 1.48234 1.48307 1.11789 1.23275 1.21732 1.02511 0.83059 0.99263 1.19594 0.80470 0.87271 0.83436 1.90734 1.57250 1.16341 1.75603 1.23842 0.95688 0.90232 0.94028 0.86542 1.22827 0.92507 1.01861 0.98538 1.24666 0.97767 0.94736 0.97012 1.19130 0.78905 0.83476 0.77791 1.90992 1.69230 1.26681 1.49853 1.84645 1.45611 1.52290 1.48077 1.78550 1.00861 1.02227 1.13142 1.91454 1.35186 1.27530 1.62504 0.94945 0.96802 0.88581 0.92501 0.92622 0.93049 0.90123 0.85982 0.86137 0.71761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.95 37.16 0.33 -3.04 16 2 C 0.26 6.32 2.64 -69.09 -0.18 6.14 16 3 H 0.07 1.87 6.90 -51.92 -0.36 1.51 16 4 C -0.53 -13.70 8.37 -34.44 -0.29 -13.99 16 5 H 0.06 1.51 7.65 -52.49 -0.40 1.10 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.58 -11.55 2.75 -175.27 -0.48 -12.03 16 13 C 0.08 1.15 8.48 59.85 0.51 1.65 16 14 C 0.51 10.15 7.03 -10.98 -0.08 10.07 16 15 O -0.52 -12.97 15.91 -13.31 -0.21 -13.18 16 16 C 0.02 0.36 3.23 -26.97 -0.09 0.27 16 17 H 0.12 1.36 7.22 -51.93 -0.37 0.98 16 18 C -0.12 -1.46 5.50 -26.48 -0.15 -1.61 16 19 C 0.05 0.63 7.30 -79.51 -0.58 0.05 16 20 C 0.57 5.99 8.34 34.49 0.29 6.28 16 21 O -0.48 -5.91 17.74 -19.24 -0.34 -6.25 16 22 O -0.49 -3.86 13.43 -40.64 -0.55 -4.41 16 23 N -0.21 -3.03 12.51 35.26 0.44 -2.59 16 24 O -0.14 -2.44 11.83 -30.26 -0.36 -2.80 16 25 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.55 6.15 -51.93 -0.32 0.23 16 31 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 32 H 0.12 1.15 7.67 -51.93 -0.40 0.75 16 33 H 0.12 1.65 7.90 -51.93 -0.41 1.24 16 34 H 0.42 0.95 9.11 45.56 0.42 1.37 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -33.50 297.83 -4.55 -38.05 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.82 Total: -0.43 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.33 Total: 7.48 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.59 Total: -38.43 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -1.46 Total: -26.64 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.50 -4.55 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.270 kcal (2) G-P(sol) polarization free energy of solvation -33.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds