Wall clock time and date at job start Mon Mar 30 2020 00:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 H 1.08998 * 110.85877 * 304.29623 * 16 14 12 18 18 C 1.54741 * 110.97801 * 68.09708 * 16 14 12 19 19 C 1.51679 * 102.54885 * 142.33324 * 18 16 14 20 20 C 1.47476 * 125.86497 * 164.61284 * 19 18 16 21 21 O 1.21473 * 119.99888 * 359.97438 * 20 19 18 22 22 O 1.34752 * 120.00222 * 179.97438 * 20 19 18 23 23 N 1.29062 * 108.27483 * 344.61143 * 19 18 16 24 24 O 1.41438 * 112.89212 * 359.70844 * 23 19 18 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 30 30 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 31 31 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 32 32 H 1.09001 * 110.78927 * 260.59986 * 18 16 14 33 33 H 1.08994 * 110.79091 * 23.87254 * 18 16 14 34 34 H 0.96703 * 117.00246 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 1 2.4679 -1.1646 3.8856 18 6 4.3213 -1.8428 2.9396 19 6 5.3318 -1.7473 4.0668 20 6 6.3526 -2.7582 4.4000 21 8 6.4344 -3.7777 3.7446 22 8 7.1947 -2.5509 5.4314 23 7 5.1449 -0.6296 4.6843 24 8 4.0930 0.1362 4.1297 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 2.4158 -2.7376 0.9718 30 1 1.6238 -2.2851 2.5003 31 1 0.6905 -2.3002 0.9847 32 1 3.8492 -2.8251 2.9253 33 1 4.7874 -1.6252 1.9787 34 1 7.8466 -3.2420 5.6117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230760156.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:20 Heat of formation + Delta-G solvation = -111.394866 kcal Electronic energy + Delta-G solvation = -20920.841045 eV Core-core repulsion = 17434.903343 eV Total energy + Delta-G solvation = -3485.937702 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19596 -41.15085 -40.03785 -37.35226 -37.24020 -34.95716 -34.49224 -32.72386 -30.77408 -27.75425 -27.29790 -26.58417 -25.82512 -22.93532 -21.60778 -20.38664 -19.38641 -18.83515 -18.53414 -18.01506 -17.42023 -17.08246 -16.90534 -16.61947 -16.19770 -15.51977 -15.11349 -14.55319 -14.45715 -14.39479 -14.11853 -13.91043 -13.47998 -13.25964 -13.03407 -12.91896 -12.77420 -12.71762 -12.61593 -12.37803 -12.18007 -12.15849 -12.12933 -11.34795 -11.19248 -10.64020 -10.48265 -9.43701 -8.14312 -6.30880 -0.54318 0.98302 1.41486 1.44629 1.45427 1.48888 1.53956 1.67406 2.31437 2.47021 2.90158 3.10669 3.14692 3.42622 3.58602 3.73713 4.15450 4.36288 4.41050 4.49972 4.69458 4.78685 4.89760 5.03673 5.06723 5.20676 5.44749 5.53646 5.64836 5.67012 6.01112 6.14235 6.66398 6.73173 6.76228 7.18083 7.41735 8.90071 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.004918 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.408617 B = 5691.730898 C = 6321.532773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.261 3.739 3 H 0.008 0.992 4 C -0.537 4.537 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.287 1.287 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.585 5.585 13 C 0.068 3.932 14 C 0.501 3.499 15 O -0.588 6.588 16 C 0.034 3.966 17 H 0.159 0.841 18 C -0.116 4.116 19 C 0.070 3.930 20 C 0.580 3.420 21 O -0.498 6.498 22 O -0.489 6.489 23 N -0.225 5.225 24 O -0.183 6.183 25 H 0.054 0.946 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.264 0.736 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.107 0.893 34 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -13.059 13.906 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.576 4.576 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.213 1.213 10 H -0.204 1.204 11 H -0.184 1.184 12 N -0.316 5.316 13 C -0.073 4.073 14 C 0.286 3.714 15 O -0.469 6.469 16 C -0.027 4.027 17 H 0.176 0.824 18 C -0.155 4.155 19 C -0.123 4.123 20 C 0.420 3.580 21 O -0.383 6.383 22 O -0.304 6.304 23 N 0.031 4.969 24 O -0.204 6.204 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.181 0.819 33 H 0.126 0.874 34 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 6.262 -11.537 14.241 19.368 hybrid contribution 0.226 -0.562 -1.650 1.757 sum 6.488 -12.099 12.591 18.628 Atomic orbital electron populations 1.21896 0.96737 1.00529 1.00109 1.18621 0.91901 0.92225 0.81345 0.97422 1.21531 1.32053 1.13202 0.90802 0.91540 1.25726 0.95058 0.95593 1.02040 1.70019 1.37252 1.23897 1.24497 0.85520 0.78314 0.79094 0.78148 1.21251 1.20417 1.18440 1.48168 1.47942 1.13728 1.21795 1.22106 1.02715 0.79801 1.02703 1.20484 0.79514 0.86744 0.84623 1.90698 1.59492 1.19375 1.77298 1.23827 0.97343 0.89802 0.91726 0.82421 1.22897 0.92066 1.02822 0.97710 1.25001 0.97362 0.94028 0.95897 1.18745 0.78731 0.82495 0.78074 1.91003 1.69674 1.27040 1.50558 1.84603 1.45670 1.53506 1.46596 1.78595 1.00873 1.03112 1.14330 1.91441 1.36393 1.29478 1.63106 0.92752 0.95987 0.91392 0.92671 0.91228 0.88250 0.90312 0.81897 0.87441 0.68780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.95 71.98 0.64 -5.54 16 2 C 0.26 13.06 2.64 44.24 0.12 13.17 16 3 H 0.01 0.48 6.90 -2.38 -0.02 0.46 16 4 C -0.54 -27.96 8.37 25.60 0.21 -27.74 16 5 H 0.07 3.28 7.65 -2.91 -0.02 3.26 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -52.04 11.32 21.45 0.24 -51.80 16 8 Si 0.96 41.93 29.54 68.60 2.03 43.95 16 9 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 12 N -0.59 -22.82 2.75 -826.81 -2.28 -25.09 16 13 C 0.07 1.78 8.48 127.77 1.08 2.86 16 14 C 0.50 20.05 7.03 87.66 0.62 20.67 16 15 O -0.59 -30.73 15.91 15.01 0.24 -30.49 16 16 C 0.03 0.96 3.23 30.44 0.10 1.06 16 17 H 0.16 3.04 7.22 -2.39 -0.02 3.02 16 18 C -0.12 -2.53 5.50 30.75 0.17 -2.36 16 19 C 0.07 1.57 7.30 45.71 0.33 1.90 16 20 C 0.58 10.37 8.34 70.26 0.59 10.96 16 21 O -0.50 -10.43 17.74 19.92 0.35 -10.08 16 22 O -0.49 -6.01 13.43 -56.63 -0.76 -6.77 16 23 N -0.22 -6.28 12.51 -42.37 -0.53 -6.81 16 24 O -0.18 -6.20 11.83 -20.38 -0.24 -6.44 16 25 H 0.05 2.21 6.66 -2.39 -0.02 2.19 16 26 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 3.54 6.07 -2.39 -0.01 3.52 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 1.63 6.15 -2.38 -0.01 1.61 16 31 H 0.08 2.11 6.43 -2.39 -0.02 2.09 16 32 H 0.16 2.22 7.67 -2.39 -0.02 2.20 16 33 H 0.11 2.74 7.90 -2.39 -0.02 2.72 16 34 H 0.45 0.36 9.11 -74.06 -0.67 -0.32 16 Total: -1.00 -77.29 297.83 3.85 -73.44 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.48 Total: 3.84 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 4.31 Total: 16.24 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.56 Total: -83.70 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.41 Total: -53.78 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -77.29 3.85 -73.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230760156.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.953 kcal (2) G-P(sol) polarization free energy of solvation -77.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds