Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47126 * 240.00048 * 3 2 1 5 5 H 1.48510 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47354 * 119.99479 * 3 2 1 7 7 C 1.37878 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46779 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00052 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99831 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00403 * 180.02562 * 11 10 9 14 14 C 1.39894 * 120.00651 * 185.31886 * 13 11 10 15 15 C 1.40000 * 119.65455 * 33.78693 * 14 13 11 16 16 C 1.35916 * 120.92158 * 180.25587 * 15 14 13 17 17 C 1.40595 * 119.90005 * 359.76069 * 16 15 14 18 18 C 1.40533 * 121.14140 * 179.97438 * 17 16 15 19 19 C 1.36109 * 119.69279 * 180.02562 * 18 17 16 20 20 C 1.39367 * 120.99588 * 359.95172 * 19 18 17 21 21 C 1.36085 * 120.96952 * 0.02562 * 20 19 18 22 22 C 1.40586 * 119.66444 * 359.97438 * 21 20 19 23 23 C 1.37694 * 119.66384 * 213.54557 * 14 13 11 24 24 H 0.97000 * 119.99505 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47243 * 60.00351 * 9 7 2 26 26 H 1.08991 * 109.47219 * 299.99706 * 9 7 2 27 27 H 0.96998 * 120.00425 * 0.02562 * 10 9 7 28 28 H 0.97003 * 120.00164 * 5.32008 * 13 11 10 29 29 H 1.07998 * 119.53723 * 0.02562 * 15 14 13 30 30 H 1.07997 * 120.04931 * 179.77137 * 16 15 14 31 31 H 1.08004 * 120.15559 * 0.03913 * 18 17 16 32 32 H 1.07997 * 119.49789 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.51452 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.16711 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.24480 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5584 -5.1055 -0.0009 13 7 2.6296 -5.9077 0.0005 14 6 2.1674 -7.2233 -0.1123 15 6 1.0351 -7.4954 -0.8893 16 6 0.5608 -8.7632 -1.0126 17 6 1.2136 -9.8224 -0.3579 18 6 0.7454 -11.1429 -0.4669 19 6 1.3998 -12.1459 0.1800 20 6 2.5312 -11.8845 0.9507 21 6 3.0139 -10.6187 1.0791 22 6 2.3646 -9.5567 0.4256 23 6 2.8337 -8.2378 0.5379 24 1 -0.4849 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5566 0.8902 27 1 3.1567 -3.4354 0.0009 28 1 3.5805 -5.7329 0.0792 29 1 0.5293 -6.6862 -1.3949 30 1 -0.3160 -8.9566 -1.6127 31 1 -0.1295 -11.3611 -1.0614 32 1 1.0371 -13.1595 0.0943 33 1 3.0322 -12.6986 1.4534 34 1 3.8920 -10.4309 1.6793 35 1 3.7086 -8.0203 1.1327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000240771093.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = 10.360589 kcal Electronic energy + Delta-G solvation = -18896.628043 eV Core-core repulsion = 15859.112068 eV Total energy + Delta-G solvation = -3037.515975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59528 -39.39036 -36.64481 -34.28133 -34.00609 -32.54108 -32.27277 -29.70323 -28.78795 -26.98677 -23.47914 -23.36815 -22.14602 -21.97851 -20.37521 -18.37398 -17.94232 -17.00852 -16.54982 -15.89478 -15.27146 -14.81231 -14.78281 -14.56528 -14.07828 -13.71603 -13.58161 -13.34880 -13.12346 -12.98681 -12.18248 -12.02622 -11.99009 -11.50301 -11.25086 -11.02218 -10.91165 -10.86215 -10.35150 -10.14377 -9.60929 -9.50940 -9.45059 -8.78824 -8.23050 -7.99533 -7.54953 -6.20101 -4.27463 0.55207 1.05977 2.06754 2.94065 3.12963 3.23188 3.28537 3.30425 3.74760 4.19521 4.28584 4.60034 4.81173 4.83463 4.93054 5.09416 5.16103 5.16226 5.32695 5.36851 5.45379 5.70660 5.86295 5.97981 6.13205 6.26947 6.38859 6.46707 6.57939 6.67986 6.87485 6.99186 7.15903 7.34540 7.45126 7.47887 7.77526 7.94697 8.63342 8.78729 9.13027 9.39521 10.90002 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.058505 B = 0.003057 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.473060 B = 9156.658848 C = 9508.652630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.721 5.721 11 C 0.690 3.310 12 O -0.581 6.581 13 N -0.696 5.696 14 C 0.199 3.801 15 C -0.108 4.108 16 C -0.092 4.092 17 C -0.072 4.072 18 C -0.096 4.096 19 C -0.134 4.134 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.026 4.026 23 C -0.164 4.164 24 H 0.267 0.733 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.389 0.611 28 H 0.404 0.596 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -20.735 -0.342 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.372 5.372 11 C 0.390 3.610 12 O -0.458 6.458 13 N -0.344 5.344 14 C 0.102 3.898 15 C -0.128 4.128 16 C -0.111 4.111 17 C -0.072 4.072 18 C -0.114 4.114 19 C -0.152 4.152 20 C -0.135 4.135 21 C -0.131 4.131 22 C -0.027 4.027 23 C -0.186 4.186 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.221 0.779 28 H 0.239 0.761 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.632 -20.612 -0.360 21.371 hybrid contribution 1.346 1.164 0.127 1.784 sum 6.978 -19.448 -0.232 20.663 Atomic orbital electron populations 1.69969 1.06101 1.27512 1.48598 1.24945 0.94934 0.99440 0.94641 0.86449 0.79396 0.82218 0.78691 1.20055 1.21027 1.20054 1.21163 0.93259 0.90333 1.53602 0.91917 1.19061 0.87705 0.80855 0.97875 1.45800 1.11182 1.04144 1.76090 1.16176 0.85144 0.81053 0.78654 1.90904 1.13834 1.83758 1.57345 1.42922 1.10091 1.03830 1.77529 1.17541 0.94871 0.83126 0.94229 1.21053 0.96187 0.97593 0.97931 1.20901 0.99359 0.91658 0.99175 1.18092 0.95912 0.93950 0.99275 1.21010 0.99450 0.91797 0.99180 1.20753 0.96573 0.99106 0.98751 1.20775 0.96789 0.96754 0.99202 1.20949 0.99893 0.92309 0.99915 1.17767 0.94763 0.93030 0.97100 1.20819 1.03462 0.91483 1.02835 0.92311 0.95445 0.95467 0.77858 0.76088 0.84092 0.85312 0.85825 0.86395 0.86366 0.85861 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.16 16 9 C 0.27 6.94 5.43 -5.19 -0.03 6.91 16 10 N -0.72 -14.89 5.55 -66.42 -0.37 -15.25 16 11 C 0.69 13.88 8.29 -86.92 -0.72 13.16 16 12 O -0.58 -13.98 14.02 5.28 0.07 -13.90 16 13 N -0.70 -10.60 5.33 -14.24 -0.08 -10.67 16 14 C 0.20 3.02 6.25 -83.72 -0.52 2.50 16 15 C -0.11 -1.71 8.55 -39.75 -0.34 -2.05 16 16 C -0.09 -1.25 9.75 -39.53 -0.39 -1.63 16 17 C -0.07 -0.93 5.74 -106.80 -0.61 -1.54 16 18 C -0.10 -1.03 9.76 -39.48 -0.39 -1.42 16 19 C -0.13 -1.27 9.95 -39.93 -0.40 -1.67 16 20 C -0.12 -1.11 9.95 -39.94 -0.40 -1.51 16 21 C -0.11 -1.19 9.77 -39.47 -0.39 -1.58 16 22 C -0.03 -0.33 5.74 -106.84 -0.61 -0.94 16 23 C -0.16 -2.12 9.70 -38.95 -0.38 -2.50 16 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.39 6.74 8.34 -40.82 -0.34 6.40 16 28 H 0.40 4.64 8.83 -40.82 -0.36 4.28 16 29 H 0.14 2.52 6.40 -52.49 -0.34 2.18 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -32.40 306.76 -9.57 -41.97 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.95 Total: 8.20 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -5.58 Total: -5.48 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.29 Total: -51.00 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.07 Total: -13.90 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.40 -9.57 -41.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000240771093.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.330 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds