Wall clock time and date at job start Mon Mar 30 2020 01:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99770 * 2 1 4 4 H 1.48504 * 109.46910 * 269.99826 * 3 2 1 5 5 H 1.48494 * 109.47393 * 29.99677 * 3 2 1 6 6 H 1.48500 * 109.47141 * 150.00182 * 3 2 1 7 7 C 1.39926 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00418 * 162.63027 * 7 2 1 9 9 C 1.41443 * 119.99815 * 342.62226 * 7 2 1 10 10 C 1.40799 * 120.17543 * 154.93498 * 9 7 2 11 11 C 1.37707 * 120.04058 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.40834 * 359.71738 * 11 10 9 13 13 C 1.39903 * 120.35264 * 0.56380 * 12 11 10 14 14 C 1.47850 * 120.01902 * 179.71383 * 13 12 11 15 15 N 1.32100 * 126.68046 * 359.72682 * 14 13 12 16 16 C 1.34208 * 105.55280 * 180.02562 * 15 14 13 17 17 C 1.50701 * 126.19324 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47014 * 270.00487 * 17 16 15 19 19 C 1.53006 * 117.49420 * 243.74049 * 18 17 16 20 20 C 1.53002 * 117.49517 * 175.08660 * 18 17 16 21 21 N 1.30038 * 107.61766 * 0.02562 * 16 15 14 22 22 O 1.21287 * 110.48430 * 0.02562 * 21 16 15 23 23 C 1.39023 * 119.95240 * 359.43950 * 13 12 11 24 24 H 0.96998 * 120.00034 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.97673 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.79729 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.82386 * 180.30353 * 12 11 10 28 28 H 1.09002 * 109.46751 * 30.00365 * 17 16 15 29 29 H 1.08993 * 109.47037 * 149.99631 * 17 16 15 30 30 H 1.08997 * 115.55219 * 29.41468 * 18 17 16 31 31 H 1.09000 * 117.50133 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.49403 * 145.02281 * 19 18 17 33 33 H 1.08999 * 117.49786 * 214.97549 * 20 18 17 34 34 H 1.09007 * 117.49967 * 359.97308 * 20 18 17 35 35 H 1.07992 * 120.20286 * 180.29526 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2117 -0.0005 8 1 3.0511 -1.2330 -0.2798 9 6 1.3493 -2.4089 0.3648 10 6 1.8193 -3.6485 -0.1095 11 6 1.1762 -4.8123 0.2484 12 6 0.0699 -4.7744 1.0788 13 6 -0.4150 -3.5516 1.5550 14 6 -1.6013 -3.5191 2.4368 15 7 -2.3046 -4.5574 2.8519 16 6 -3.2774 -4.0479 3.6234 17 6 -4.3488 -4.8309 4.3376 18 6 -5.5668 -4.9795 3.4236 19 6 -6.8730 -4.3230 3.8751 20 6 -6.7243 -5.8457 3.9243 21 7 -3.1282 -2.7563 3.6432 22 8 -2.1743 -2.4289 2.9694 23 6 0.2229 -2.3675 1.2031 24 1 -0.4850 0.8400 -0.0004 25 1 2.6854 -3.6865 -0.7536 26 1 1.5404 -5.7610 -0.1173 27 1 -0.4243 -5.6933 1.3574 28 1 -3.9660 -5.8182 4.5961 29 1 -4.6388 -4.3042 5.2467 30 1 -5.3536 -4.9933 2.3547 31 1 -6.8645 -3.7850 4.8230 32 1 -7.5193 -3.9053 3.1032 33 1 -7.2729 -6.4290 3.1849 34 1 -6.6179 -6.3101 4.9048 35 1 -0.1451 -1.4217 1.5723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266618065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:27 Heat of formation + Delta-G solvation = 99.115060 kcal Electronic energy + Delta-G solvation = -19258.531094 eV Core-core repulsion = 16224.863802 eV Total energy + Delta-G solvation = -3033.667292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.87244 -37.82301 -37.72797 -35.23651 -33.92177 -32.59892 -29.86184 -29.63398 -28.60504 -25.46376 -23.71567 -22.73582 -22.48902 -21.05863 -20.72055 -19.94202 -17.72039 -17.41839 -16.74032 -15.84395 -15.43211 -14.83512 -14.57969 -14.44431 -13.78766 -13.43294 -13.13050 -12.71023 -12.50291 -12.00757 -11.96227 -11.85886 -11.66143 -11.49383 -11.17366 -11.00811 -10.83596 -10.63963 -10.48865 -10.45227 -10.08530 -9.90621 -9.81535 -9.69334 -9.24325 -7.63457 -7.59701 -6.89737 -4.51672 1.35465 2.41035 2.70404 3.03012 3.03673 3.08945 3.26295 3.45836 3.61541 3.85229 4.04053 4.46108 4.49132 4.65621 4.83009 4.87387 5.21273 5.45011 5.47186 5.51520 5.56710 5.73709 5.86353 5.96097 6.07684 6.09533 6.26422 6.33408 6.48482 6.64169 6.84619 6.93772 7.10090 7.23365 7.58925 7.71986 7.81031 8.00647 8.36657 8.67406 8.71098 8.75203 10.05469 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.004366 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.717543 B = 6411.895894 C = 7270.182454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.102 3.898 10 C -0.199 4.199 11 C -0.098 4.098 12 C -0.187 4.187 13 C -0.034 4.034 14 C 0.266 3.734 15 N -0.498 5.498 16 C 0.167 3.833 17 C 0.008 3.992 18 C -0.148 4.148 19 C -0.178 4.178 20 C -0.174 4.174 21 N -0.400 5.400 22 O 0.076 5.924 23 C -0.113 4.113 24 H 0.285 0.715 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.066 -5.326 5.285 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.099 3.901 10 C -0.220 4.220 11 C -0.116 4.116 12 C -0.208 4.208 13 C -0.036 4.036 14 C 0.051 3.949 15 N -0.232 5.232 16 C -0.106 4.106 17 C -0.031 4.031 18 C -0.167 4.167 19 C -0.215 4.215 20 C -0.211 4.211 21 N -0.111 5.111 22 O 0.019 5.981 23 C -0.134 4.134 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.941 -5.053 5.785 11.048 hybrid contribution 0.363 0.871 -0.231 0.971 sum -7.578 -4.182 5.554 10.284 Atomic orbital electron populations 1.69763 1.07628 1.29848 1.34223 1.25943 0.94772 1.01572 0.92090 0.86277 0.80643 0.80373 0.79329 1.19389 1.19938 1.18322 1.19573 0.98138 0.90846 1.40214 0.89894 1.17481 0.90910 0.92582 0.89090 1.21215 1.03147 0.92710 1.04903 1.20481 0.95816 0.97103 0.98183 1.20343 1.00342 0.94847 1.05228 1.17214 0.91114 0.96116 0.99186 1.26979 0.95121 0.79483 0.93288 1.72109 1.07028 1.28649 1.15449 1.25496 0.97845 0.88415 0.98887 1.19410 0.88887 0.99007 0.95776 1.22149 0.88858 1.05578 1.00110 1.23079 0.99916 0.95300 1.03175 1.22988 1.01757 0.93547 1.02853 1.74543 1.05319 1.16187 1.15084 1.85406 1.30922 1.35429 1.46331 1.21592 0.97804 0.95551 0.98456 0.90391 0.88165 0.88197 0.87641 0.88500 0.89394 0.87524 0.88580 0.88790 0.88621 0.88561 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 10.97 55.55 0.61 -18.98 16 2 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 3 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.37 9.05 -37.73 -0.34 -11.71 16 8 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 9 C 0.10 2.54 5.57 -106.87 -0.59 1.94 16 10 C -0.20 -4.50 9.78 -38.81 -0.38 -4.88 16 11 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 12 C -0.19 -4.05 9.71 -38.91 -0.38 -4.42 16 13 C -0.03 -0.78 5.87 -105.05 -0.62 -1.39 16 14 C 0.27 5.85 8.01 -13.85 -0.11 5.74 16 15 N -0.50 -10.19 11.24 -10.16 -0.11 -10.31 16 16 C 0.17 3.06 7.41 -156.55 -1.16 1.90 16 17 C 0.01 0.11 6.12 -27.88 -0.17 -0.07 16 18 C -0.15 -1.81 5.72 -90.62 -0.52 -2.33 16 19 C -0.18 -1.85 10.18 -26.69 -0.27 -2.12 16 20 C -0.17 -1.64 10.25 -26.69 -0.27 -1.91 16 21 N -0.40 -8.08 12.15 31.18 0.38 -7.70 16 22 O 0.08 1.66 11.12 16.68 0.19 1.84 16 23 C -0.11 -2.78 8.37 -38.45 -0.32 -3.11 16 24 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 25 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 26 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.11 2.15 7.86 -52.49 -0.41 1.74 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.04 7.88 -51.93 -0.41 0.63 16 30 H 0.11 1.49 8.07 -51.93 -0.42 1.07 16 31 H 0.10 0.93 8.03 -51.93 -0.42 0.52 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.13 3.37 6.06 -52.49 -0.32 3.05 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -26.45 310.36 -8.98 -35.43 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.06 Total: 5.34 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -5.62 Total: -23.09 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.87 Total: -36.99 kcal Atomic # 8 Polarization: 1.66 SS G_CDS: 0.19 Total: 1.84 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.45 -8.98 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266618065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.547 kcal (2) G-P(sol) polarization free energy of solvation -26.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds