Wall clock time and date at job start Mon Mar 30 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 119.99770 * 2 1 4 4 H 1.48504 * 109.46910 * 269.99826 * 3 2 1 5 5 H 1.48494 * 109.47393 * 29.99677 * 3 2 1 6 6 H 1.48500 * 109.47141 * 150.00182 * 3 2 1 7 7 C 1.39926 * 120.00385 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00418 * 162.63027 * 7 2 1 9 9 C 1.41443 * 119.99815 * 342.62226 * 7 2 1 10 10 C 1.40799 * 120.17543 * 154.93498 * 9 7 2 11 11 C 1.37707 * 120.04058 * 179.97438 * 10 9 7 12 12 C 1.38378 * 120.40834 * 359.71738 * 11 10 9 13 13 C 1.39903 * 120.35264 * 0.56380 * 12 11 10 14 14 C 1.47850 * 120.01902 * 179.71383 * 13 12 11 15 15 N 1.32100 * 126.68046 * 359.72682 * 14 13 12 16 16 C 1.34208 * 105.55280 * 180.02562 * 15 14 13 17 17 C 1.50701 * 126.19324 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47014 * 270.00487 * 17 16 15 19 19 C 1.53006 * 117.49420 * 243.74049 * 18 17 16 20 20 C 1.53002 * 117.49517 * 175.08660 * 18 17 16 21 21 N 1.30038 * 107.61766 * 0.02562 * 16 15 14 22 22 O 1.21287 * 110.48430 * 0.02562 * 21 16 15 23 23 C 1.39023 * 119.95240 * 359.43950 * 13 12 11 24 24 H 0.96998 * 120.00034 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.97673 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.79729 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.82386 * 180.30353 * 12 11 10 28 28 H 1.09002 * 109.46751 * 30.00365 * 17 16 15 29 29 H 1.08993 * 109.47037 * 149.99631 * 17 16 15 30 30 H 1.08997 * 115.55219 * 29.41468 * 18 17 16 31 31 H 1.09000 * 117.50133 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.49403 * 145.02281 * 19 18 17 33 33 H 1.08999 * 117.49786 * 214.97549 * 20 18 17 34 34 H 1.09007 * 117.49967 * 359.97308 * 20 18 17 35 35 H 1.07992 * 120.20286 * 180.29526 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2117 -0.0005 8 1 3.0511 -1.2330 -0.2798 9 6 1.3493 -2.4089 0.3648 10 6 1.8193 -3.6485 -0.1095 11 6 1.1762 -4.8123 0.2484 12 6 0.0699 -4.7744 1.0788 13 6 -0.4150 -3.5516 1.5550 14 6 -1.6013 -3.5191 2.4368 15 7 -2.3046 -4.5574 2.8519 16 6 -3.2774 -4.0479 3.6234 17 6 -4.3488 -4.8309 4.3376 18 6 -5.5668 -4.9795 3.4236 19 6 -6.8730 -4.3230 3.8751 20 6 -6.7243 -5.8457 3.9243 21 7 -3.1282 -2.7563 3.6432 22 8 -2.1743 -2.4289 2.9694 23 6 0.2229 -2.3675 1.2031 24 1 -0.4850 0.8400 -0.0004 25 1 2.6854 -3.6865 -0.7536 26 1 1.5404 -5.7610 -0.1173 27 1 -0.4243 -5.6933 1.3574 28 1 -3.9660 -5.8182 4.5961 29 1 -4.6388 -4.3042 5.2467 30 1 -5.3536 -4.9933 2.3547 31 1 -6.8645 -3.7850 4.8230 32 1 -7.5193 -3.9053 3.1032 33 1 -7.2729 -6.4290 3.1849 34 1 -6.6179 -6.3101 4.9048 35 1 -0.1451 -1.4217 1.5723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266618065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:26 Heat of formation + Delta-G solvation = 85.959883 kcal Electronic energy + Delta-G solvation = -19259.101545 eV Core-core repulsion = 16224.863802 eV Total energy + Delta-G solvation = -3034.237744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.46921 -39.51464 -38.75360 -36.75355 -35.68142 -34.21132 -31.63936 -31.21983 -29.93788 -27.28137 -25.37105 -24.28200 -23.25747 -22.62683 -22.17574 -21.32581 -19.45420 -19.02195 -18.37644 -17.22012 -16.84047 -16.53391 -16.17160 -15.43228 -15.32238 -14.81470 -14.66877 -14.32601 -13.80871 -13.74786 -13.45980 -13.22692 -13.08496 -12.81495 -12.67828 -12.39710 -12.30829 -12.20987 -12.10799 -11.68879 -11.55937 -11.47284 -11.20036 -10.97138 -10.95101 -9.45111 -9.36063 -8.67429 -6.39087 -0.37198 0.83130 0.96544 1.40857 1.43203 1.54719 1.60190 1.78290 2.21090 2.54815 2.70751 2.89459 3.02946 3.62295 3.74533 3.90145 3.93842 4.09934 4.22934 4.42282 4.57914 4.62646 4.64659 4.76626 4.78812 4.89597 4.91563 5.00413 5.06037 5.15973 5.18317 5.24278 5.30063 5.44330 5.80484 5.93307 6.00045 6.22023 6.53494 6.87066 6.87690 7.10354 8.29714 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.004366 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.717543 B = 6411.895894 C = 7270.182454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.491 4.491 8 H 0.088 0.912 9 C 0.075 3.925 10 C -0.204 4.204 11 C -0.091 4.091 12 C -0.183 4.183 13 C -0.041 4.041 14 C 0.253 3.747 15 N -0.500 5.500 16 C 0.179 3.821 17 C 0.010 3.990 18 C -0.173 4.173 19 C -0.179 4.179 20 C -0.148 4.148 21 N -0.414 5.414 22 O 0.051 5.949 23 C -0.138 4.138 24 H 0.289 0.711 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 -6.725 5.892 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.520 4.520 8 H 0.106 0.894 9 C 0.073 3.927 10 C -0.224 4.224 11 C -0.109 4.109 12 C -0.204 4.204 13 C -0.044 4.044 14 C 0.038 3.962 15 N -0.234 5.234 16 C -0.094 4.094 17 C -0.029 4.029 18 C -0.193 4.193 19 C -0.216 4.216 20 C -0.185 4.185 21 N -0.128 5.128 22 O 0.000 6.000 23 C -0.160 4.160 24 H 0.100 0.900 25 H 0.135 0.865 26 H 0.159 0.841 27 H 0.140 0.860 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.416 -6.452 6.377 12.374 hybrid contribution 0.421 1.139 -0.393 1.276 sum -7.995 -5.313 5.984 11.312 Atomic orbital electron populations 1.69841 1.09126 1.30829 1.35279 1.26769 0.95382 1.04698 0.91137 0.85222 0.79196 0.75931 0.79572 1.18519 1.19673 1.17883 1.19860 0.98576 0.91814 1.41715 0.89435 1.17838 0.91408 0.93898 0.89604 1.21503 1.03634 0.92503 1.04779 1.20884 0.94794 0.98254 0.96932 1.20648 1.00394 0.94742 1.04594 1.17400 0.91401 0.96280 0.99298 1.26953 0.95391 0.80068 0.93813 1.72122 1.07388 1.28251 1.15687 1.26418 0.97570 0.88093 0.97347 1.19712 0.87814 0.99285 0.96039 1.22022 0.89417 1.09176 0.98670 1.23186 0.98343 0.96579 1.03485 1.23110 0.98612 0.92937 1.03815 1.74546 1.05275 1.17300 1.15713 1.85395 1.31674 1.35922 1.47033 1.21439 0.99065 0.95430 1.00076 0.90040 0.86490 0.84119 0.86011 0.86757 0.87477 0.89947 0.87713 0.88730 0.87579 0.86539 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.58 10.97 21.82 0.24 -42.34 16 2 C 0.04 1.73 5.14 85.25 0.44 2.17 16 3 Si 0.98 37.05 29.59 68.60 2.03 39.08 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 7 C -0.49 -24.95 9.05 23.47 0.21 -24.74 16 8 H 0.09 4.19 7.90 -2.91 -0.02 4.17 16 9 C 0.07 3.82 5.57 -21.32 -0.12 3.70 16 10 C -0.20 -9.09 9.78 22.77 0.22 -8.86 16 11 C -0.09 -3.61 10.01 22.18 0.22 -3.39 16 12 C -0.18 -7.76 9.71 22.71 0.22 -7.53 16 13 C -0.04 -1.94 5.87 -20.14 -0.12 -2.06 16 14 C 0.25 11.38 8.01 87.32 0.70 12.08 16 15 N -0.50 -20.31 11.24 -302.76 -3.40 -23.71 16 16 C 0.18 6.47 7.41 138.53 1.03 7.49 16 17 C 0.01 0.25 6.12 29.85 0.18 0.43 16 18 C -0.17 -3.96 5.72 -10.79 -0.06 -4.02 16 19 C -0.18 -3.33 10.18 30.62 0.31 -3.02 16 20 C -0.15 -2.31 10.25 30.62 0.31 -1.99 16 21 N -0.41 -16.89 12.15 -58.65 -0.71 -17.61 16 22 O 0.05 2.32 11.12 69.76 0.78 3.10 16 23 C -0.14 -7.15 8.37 23.00 0.19 -6.95 16 24 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 25 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 26 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 27 H 0.12 4.73 7.86 -2.91 -0.02 4.71 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.11 2.25 7.88 -2.39 -0.02 2.23 16 30 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 31 H 0.10 1.77 8.03 -2.39 -0.02 1.75 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.11 6.06 6.06 -2.91 -0.02 6.04 16 Total: -1.00 -58.64 310.36 3.78 -54.86 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 1.11 Total: 23.33 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 3.74 Total: -36.70 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.88 Total: -83.66 kcal Atomic # 8 Polarization: 2.32 SS G_CDS: 0.78 Total: 3.10 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -58.64 3.78 -54.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266618065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.824 kcal (2) G-P(sol) polarization free energy of solvation -58.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds