Wall clock time and date at job start Mon Mar 30 2020 01:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50700 * 109.46983 * 208.89723 * 3 2 1 5 5 C 1.38376 * 119.84932 * 89.99980 * 4 3 2 6 6 C 1.37928 * 120.14900 * 179.97438 * 5 4 3 7 7 C 1.39652 * 119.85108 * 359.97438 * 6 5 4 8 8 C 1.47718 * 120.15179 * 180.02562 * 7 6 5 9 9 O 1.21595 * 120.00390 * 340.04824 * 8 7 6 10 10 N 1.34775 * 120.00154 * 160.33084 * 8 7 6 11 11 C 1.36874 * 119.99685 * 355.51658 * 10 8 7 12 12 H 1.07995 * 119.99868 * 293.25863 * 11 10 8 13 13 C 1.39050 * 119.99954 * 113.26240 * 11 10 8 14 14 N 1.31365 * 119.99905 * 351.06801 * 13 11 10 15 15 Si 1.86800 * 120.00071 * 171.07023 * 13 11 10 16 16 H 1.48510 * 109.47033 * 59.99657 * 15 13 11 17 17 H 1.48495 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46931 * 300.00072 * 15 13 11 19 19 C 1.46500 * 120.00651 * 175.51815 * 10 8 7 20 20 C 1.53002 * 117.50180 * 171.39863 * 19 10 8 21 21 C 1.53007 * 117.49862 * 102.73811 * 19 10 8 22 22 C 1.39644 * 119.69325 * 0.28100 * 7 6 5 23 23 C 1.37929 * 119.84848 * 359.44105 * 22 7 6 24 24 H 1.08993 * 109.47111 * 88.89148 * 3 2 1 25 25 H 1.09000 * 109.46847 * 328.89492 * 3 2 1 26 26 H 1.08001 * 119.92435 * 359.95712 * 5 4 3 27 27 H 1.08002 * 120.07878 * 179.97438 * 6 5 4 28 28 H 0.97000 * 119.99418 * 185.03894 * 14 13 11 29 29 H 1.09003 * 115.54720 * 317.07765 * 19 10 8 30 30 H 1.08993 * 117.49841 * 0.02562 * 20 19 10 31 31 H 1.09004 * 117.49377 * 145.02209 * 20 19 10 32 32 H 1.09002 * 117.49381 * 214.98687 * 21 19 10 33 33 H 1.08996 * 117.49609 * 359.97438 * 21 19 10 34 34 H 1.08005 * 120.07488 * 179.70313 * 22 7 6 35 35 H 1.08003 * 119.92785 * 180.25816 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1098 1.2448 0.6866 5 6 3.3394 1.2334 2.0511 6 6 3.7991 2.3685 2.6858 7 6 4.0334 3.5308 1.9479 8 6 4.5263 4.7500 2.6208 9 8 4.3903 4.8787 3.8222 10 7 5.1217 5.7223 1.9021 11 6 5.3524 5.5415 0.5651 12 1 6.0601 4.7953 0.2354 13 6 4.6757 6.3185 -0.3685 14 7 3.6921 7.0996 0.0163 15 14 5.1652 6.2517 -2.1700 16 1 5.0060 4.8642 -2.6750 17 1 4.2959 7.1659 -2.9534 18 1 6.5824 6.6712 -2.3137 19 6 5.5221 6.9728 2.5519 20 6 6.3697 7.9523 1.7375 21 6 7.0055 7.1554 2.8793 22 6 3.7945 3.5367 0.5721 23 6 3.3403 2.3929 -0.0507 24 1 2.9714 -0.0191 -1.0274 25 1 2.9718 -0.8791 0.5309 26 1 3.1579 0.3338 2.6205 27 1 3.9775 2.3584 3.7509 28 1 3.1725 7.5857 -0.6430 29 1 4.7973 7.3934 3.2490 30 1 6.6290 7.6665 0.7182 31 1 6.2027 9.0173 1.8991 32 1 7.2566 7.6964 3.7917 33 1 7.6834 6.3449 2.6117 34 1 3.9690 4.4336 -0.0037 35 1 3.1590 2.3949 -1.1154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270246891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:06 Heat of formation + Delta-G solvation = 39.605306 kcal Electronic energy + Delta-G solvation = -20003.283071 eV Core-core repulsion = 16967.035242 eV Total energy + Delta-G solvation = -3036.247829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10665 -39.55454 -37.86589 -37.41969 -35.53394 -33.67328 -33.00833 -31.59546 -28.89681 -27.20503 -24.32534 -23.31346 -23.01262 -22.14653 -21.20958 -19.07137 -18.50093 -17.80811 -17.29488 -16.62124 -16.32539 -16.07255 -15.76703 -15.30980 -14.99762 -14.72019 -14.58968 -14.15279 -14.02169 -13.83491 -13.67720 -13.33328 -12.94136 -12.88281 -12.76584 -12.41563 -12.23068 -12.16742 -12.03791 -11.71094 -11.44053 -11.11989 -10.74088 -10.37167 -9.70294 -9.57275 -9.03551 -8.26442 -6.26029 0.10302 0.69718 1.46860 1.50793 1.58267 1.82810 1.89679 2.13326 2.29916 2.87093 2.90444 3.02768 3.31526 3.45831 3.92940 4.11323 4.14364 4.26530 4.30757 4.34441 4.44955 4.58675 4.71923 4.82177 4.86698 4.97861 5.00829 5.16297 5.23278 5.36496 5.43689 5.45438 5.60175 5.74507 5.92528 6.22058 6.27087 6.40611 6.68363 7.05798 7.50952 8.02070 8.74396 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018798 B = 0.006620 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.139198 B = 4228.746069 C = 5287.031656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.239 3.761 3 C 0.026 3.974 4 C -0.074 4.074 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.130 4.130 8 C 0.513 3.487 9 O -0.635 6.635 10 N -0.418 5.418 11 C -0.352 4.352 12 H 0.084 0.916 13 C 0.030 3.970 14 N -0.878 5.878 15 Si 0.957 3.043 16 H -0.244 1.244 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.068 3.932 20 C -0.141 4.141 21 C -0.183 4.183 22 C -0.097 4.097 23 C -0.135 4.135 24 H 0.155 0.845 25 H 0.161 0.839 26 H 0.161 0.839 27 H 0.116 0.884 28 H 0.274 0.726 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -10.080 -4.840 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.077 4.077 3 C -0.013 4.013 4 C -0.076 4.076 5 C -0.138 4.138 6 C -0.112 4.112 7 C -0.133 4.133 8 C 0.305 3.695 9 O -0.524 6.524 10 N -0.135 5.135 11 C -0.480 4.480 12 H 0.101 0.899 13 C -0.177 4.177 14 N -0.511 5.511 15 Si 0.779 3.221 16 H -0.168 1.168 17 H -0.211 1.211 18 H -0.188 1.188 19 C -0.037 4.037 20 C -0.179 4.179 21 C -0.222 4.222 22 C -0.115 4.115 23 C -0.153 4.153 24 H 0.172 0.828 25 H 0.179 0.821 26 H 0.178 0.822 27 H 0.134 0.866 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.185 0.815 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.631 -9.782 -4.337 11.019 hybrid contribution 0.319 0.876 -0.352 0.997 sum 2.949 -8.906 -4.689 10.488 Atomic orbital electron populations 1.81244 1.15224 1.10696 1.11158 1.29708 0.95623 0.91200 0.91179 1.18533 0.78895 0.97491 1.06338 1.19855 0.99003 0.95055 0.93647 1.21193 1.00080 0.98205 0.94330 1.21320 0.97870 0.92350 0.99692 1.20002 1.04066 0.93803 0.95393 1.19268 0.78354 0.85863 0.85995 1.90546 1.62566 1.82568 1.16674 1.42688 1.50771 1.11767 1.08281 1.19093 1.25694 1.23157 0.80056 0.89882 1.26361 0.93674 0.94200 1.03465 1.69984 1.17806 1.26586 1.36691 0.85543 0.78832 0.79984 0.77763 1.16774 1.21130 1.18807 1.21428 0.92010 0.90012 1.00208 1.22880 1.02113 0.96097 0.96788 1.23318 0.95806 1.03045 0.99997 1.23178 0.92534 1.01478 0.94270 1.21450 1.00284 0.92353 1.01164 0.82762 0.82142 0.82159 0.86579 0.91642 0.90746 0.88847 0.88430 0.87541 0.89636 0.81496 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -14.91 18.54 20.01 0.37 -14.54 16 2 C 0.24 5.14 15.42 89.44 1.38 6.52 16 3 C 0.03 0.32 5.83 28.04 0.16 0.49 16 4 C -0.07 -1.71 5.10 -19.80 -0.10 -1.81 16 5 C -0.12 -3.13 9.68 22.23 0.22 -2.91 16 6 C -0.09 -3.41 9.59 22.54 0.22 -3.19 16 7 C -0.13 -5.74 5.72 -20.09 -0.11 -5.85 16 8 C 0.51 26.85 7.51 86.75 0.65 27.50 16 9 O -0.63 -36.26 16.50 -4.01 -0.07 -36.32 16 10 N -0.42 -21.13 2.57 -616.49 -1.58 -22.71 16 11 C -0.35 -16.60 4.52 84.10 0.38 -16.22 16 12 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 13 C 0.03 1.38 2.83 84.96 0.24 1.62 16 14 N -0.88 -44.41 13.33 21.68 0.29 -44.12 16 15 Si 0.96 35.15 29.41 68.60 2.02 37.16 16 16 H -0.24 -8.13 7.11 99.48 0.71 -7.43 16 17 H -0.29 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 19 C 0.07 3.24 5.50 44.99 0.25 3.49 16 20 C -0.14 -5.73 9.52 30.62 0.29 -5.44 16 21 C -0.18 -7.12 10.46 30.62 0.32 -6.80 16 22 C -0.10 -3.89 8.52 22.54 0.19 -3.70 16 23 C -0.13 -3.96 9.68 22.23 0.22 -3.75 16 24 H 0.15 0.93 8.08 -2.39 -0.02 0.91 16 25 H 0.16 0.72 8.08 -2.39 -0.02 0.71 16 26 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 27 H 0.12 4.34 7.78 -2.91 -0.02 4.31 16 28 H 0.27 13.20 8.31 -92.71 -0.77 12.42 16 29 H 0.07 3.83 8.10 -2.39 -0.02 3.81 16 30 H 0.09 3.98 6.62 -2.39 -0.02 3.97 16 31 H 0.10 3.54 8.14 -2.38 -0.02 3.52 16 32 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.17 7.43 3.26 -2.91 -0.01 7.42 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -69.30 310.05 6.44 -62.85 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 1.12 Total: 27.73 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 4.30 Total: -10.04 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -0.92 Total: -81.38 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -0.07 Total: -36.32 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.02 Total: 37.16 kcal Total: -69.30 6.44 -62.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270246891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.458 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds