Wall clock time and date at job start Mon Mar 30 2020 01:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99648 * 2 1 4 4 O 1.20823 * 120.00337 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99715 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46964 * 185.51361 * 5 3 2 7 7 H 1.09003 * 109.56296 * 323.00134 * 6 5 3 8 8 C 1.50439 * 109.56643 * 202.64998 * 6 5 3 9 9 O 1.21285 * 118.48730 * 47.44142 * 8 6 5 10 10 N 1.33378 * 123.02512 * 227.46797 * 8 6 5 11 11 C 1.45654 * 124.58517 * 4.31378 * 10 8 6 12 12 C 1.53461 * 110.74016 * 337.98113 * 11 10 8 13 13 N 1.47039 * 109.57289 * 83.24167 * 6 5 3 14 14 C 1.34775 * 121.35410 * 342.53147 * 13 6 5 15 15 O 1.21693 * 120.00006 * 354.81168 * 14 13 6 16 16 C 1.46376 * 120.00310 * 174.80205 * 14 13 6 17 17 H 1.08002 * 119.99622 * 6.56940 * 16 14 13 18 18 C 1.40049 * 119.99979 * 186.57183 * 16 14 13 19 19 N 1.30670 * 120.00373 * 6.64431 * 18 16 14 20 20 Si 1.86802 * 119.99744 * 186.64620 * 18 16 14 21 21 H 1.48496 * 109.47175 * 265.00980 * 20 18 16 22 22 H 1.48504 * 109.47042 * 25.01017 * 20 18 16 23 23 H 1.48505 * 109.47138 * 145.00949 * 20 18 16 24 24 H 1.09001 * 109.47073 * 300.00334 * 1 2 3 25 25 H 1.08998 * 109.47100 * 59.99815 * 1 2 3 26 26 H 1.08992 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47419 * 65.50739 * 5 3 2 28 28 H 1.09004 * 109.46642 * 305.50250 * 5 3 2 29 29 H 0.96999 * 117.70924 * 184.29671 * 10 8 6 30 30 H 1.08997 * 109.21625 * 98.43934 * 11 10 8 31 31 H 1.08996 * 109.21303 * 217.81005 * 11 10 8 32 32 H 1.08996 * 109.85277 * 287.31583 * 12 11 10 33 33 H 1.08998 * 109.84147 * 166.50448 * 12 11 10 34 34 H 0.96999 * 119.99939 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0005 2.7355 0.1381 7 1 3.3141 3.3746 -0.4174 8 6 5.3949 2.9001 -0.4020 9 8 5.6576 2.4159 -1.4825 10 7 6.3557 3.5535 0.2529 11 6 6.2140 4.1065 1.5929 12 6 4.7350 4.3337 1.9334 13 7 3.9914 3.1194 1.5575 14 6 3.3248 2.3928 2.4763 15 8 2.6372 1.4519 2.1258 16 6 3.4280 2.7352 3.8957 17 1 3.9503 3.6307 4.1985 18 6 2.8496 1.9015 4.8609 19 7 2.3318 0.7548 4.5083 20 14 2.8182 2.4290 6.6527 21 1 3.9858 1.8459 7.3609 22 1 2.8794 3.9106 6.7337 23 1 1.5642 1.9500 7.2878 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9511 0.8687 -0.9360 28 1 3.9607 0.6978 0.8358 29 1 7.2087 3.6683 -0.1945 30 1 6.6482 3.4144 2.3144 31 1 6.7426 5.0582 1.6459 32 1 4.3531 5.1871 1.3732 33 1 4.6253 4.5160 3.0025 34 1 1.9308 0.1776 5.1769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274717081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:10 Heat of formation + Delta-G solvation = -133.587537 kcal Electronic energy + Delta-G solvation = -22162.340427 eV Core-core repulsion = 18675.440379 eV Total energy + Delta-G solvation = -3486.900049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40696 -39.14167 -37.62964 -35.75124 -35.34302 -33.51744 -32.59401 -31.28245 -28.39041 -27.20758 -26.22022 -24.75057 -23.00255 -20.55890 -20.00458 -18.62090 -17.32082 -16.94713 -16.39285 -16.17786 -15.90793 -15.58331 -15.22923 -14.74911 -14.31094 -14.09804 -13.79709 -13.15353 -12.96293 -12.67933 -12.35064 -12.17658 -11.82266 -11.54132 -11.40600 -11.24783 -11.14898 -11.05118 -10.79837 -10.41972 -10.27472 -9.86486 -9.80850 -9.43756 -8.98617 -8.89247 -7.64686 -7.50758 -6.38449 -4.83301 2.81032 3.03074 3.11910 3.14765 3.34804 3.52367 3.78323 3.91661 4.21480 4.36093 4.87206 5.12041 5.31728 5.39881 5.52830 5.65363 5.69914 5.73686 5.86946 6.04036 6.07502 6.13402 6.21796 6.29672 6.59303 6.87143 7.18560 7.28389 7.42804 7.50438 7.82618 8.07125 8.42898 8.83835 8.89607 9.13690 10.32433 10.52809 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.009770 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.432675 B = 2865.270886 C = 4458.038948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.360 6.360 3 C 0.518 3.482 4 O -0.537 6.537 5 C -0.087 4.087 6 C 0.151 3.849 7 H 0.101 0.899 8 C 0.520 3.480 9 O -0.558 6.558 10 N -0.714 5.714 11 C 0.094 3.906 12 C 0.106 3.894 13 N -0.640 5.640 14 C 0.568 3.432 15 O -0.560 6.560 16 C -0.540 4.540 17 H 0.075 0.925 18 C 0.090 3.910 19 N -0.759 5.759 20 Si 0.908 3.092 21 H -0.272 1.272 22 H -0.263 1.263 23 H -0.278 1.278 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.393 0.607 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 4.172 -3.034 6.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.277 6.277 3 C 0.365 3.635 4 O -0.428 6.428 5 C -0.125 4.125 6 C 0.043 3.957 7 H 0.118 0.882 8 C 0.306 3.694 9 O -0.437 6.437 10 N -0.365 5.365 11 C -0.032 4.032 12 C -0.019 4.019 13 N -0.380 5.380 14 C 0.377 3.623 15 O -0.445 6.445 16 C -0.575 4.575 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.387 5.387 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.187 1.187 23 H -0.203 1.203 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.139 0.861 29 H 0.228 0.772 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.834 3.466 -3.583 6.289 hybrid contribution 0.232 0.560 0.969 1.143 sum 4.066 4.025 -2.614 6.291 Atomic orbital electron populations 1.22964 0.77961 1.02102 1.01664 1.86401 1.22106 1.34142 1.85014 1.22337 0.90774 0.80900 0.69503 1.90528 1.66918 1.36337 1.48989 1.21240 0.90217 0.96020 1.05046 1.20720 0.91791 0.97087 0.86078 0.88184 1.20537 0.87575 0.76716 0.84567 1.90707 1.81986 1.48620 1.22370 1.45325 1.15715 1.57400 1.18100 1.21975 0.99371 0.98684 0.83137 1.21908 0.88403 0.88114 1.03450 1.48364 1.56264 1.28447 1.04909 1.18207 0.77970 0.80637 0.85478 1.90321 1.43466 1.31974 1.78699 1.20850 1.37935 1.10015 0.88746 0.90661 1.25696 0.93039 0.93895 1.00469 1.69957 1.26438 1.07487 1.34796 0.86350 0.78280 0.79832 0.82324 1.19784 1.18736 1.20341 0.92087 0.93300 0.89447 0.89267 0.86089 0.77246 0.91017 0.90420 0.92511 0.86767 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 10.56 101.05 1.07 1.93 16 2 O -0.36 -8.03 10.57 -43.27 -0.46 -8.48 16 3 C 0.52 12.25 4.93 36.01 0.18 12.43 16 4 O -0.54 -13.69 14.77 -25.68 -0.38 -14.07 16 5 C -0.09 -1.88 4.89 -27.88 -0.14 -2.02 16 6 C 0.15 3.08 2.83 -68.91 -0.19 2.88 16 7 H 0.10 2.11 7.14 -51.93 -0.37 1.74 16 8 C 0.52 9.48 7.35 -11.73 -0.09 9.39 16 9 O -0.56 -11.32 16.82 5.55 0.09 -11.22 16 10 N -0.71 -10.26 5.42 -61.07 -0.33 -10.59 16 11 C 0.09 1.19 7.35 -4.26 -0.03 1.16 16 12 C 0.11 1.70 6.46 -3.38 -0.02 1.67 16 13 N -0.64 -13.57 2.97 -167.91 -0.50 -14.07 16 14 C 0.57 14.74 7.17 -12.99 -0.09 14.65 16 15 O -0.56 -16.02 8.98 -21.05 -0.19 -16.21 16 16 C -0.54 -13.72 8.90 -35.63 -0.32 -14.04 16 17 H 0.08 1.70 5.71 -52.49 -0.30 1.40 16 18 C 0.09 2.32 5.49 -17.37 -0.10 2.22 16 19 N -0.76 -21.07 11.90 55.55 0.66 -20.41 16 20 Si 0.91 18.74 29.56 -169.99 -5.03 13.71 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 25 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.09 1.76 7.22 -51.93 -0.38 1.38 16 28 H 0.12 2.88 6.44 -51.93 -0.33 2.55 16 29 H 0.39 4.72 8.80 -40.82 -0.36 4.36 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.11 1.83 5.42 -51.93 -0.28 1.55 16 34 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -34.02 286.07 -5.24 -39.25 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.69 Total: 7.48 kcal Atomic # 6 Polarization: 30.01 SS G_CDS: 0.27 Total: 30.28 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.17 Total: -45.06 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.93 Total: -49.98 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.02 -5.24 -39.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274717081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.335 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds