Wall clock time and date at job start Mon Mar 30 2020 01:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34234 * 116.99648 * 2 1 4 4 O 1.20823 * 120.00337 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99715 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46964 * 185.51361 * 5 3 2 7 7 H 1.09003 * 109.56296 * 323.00134 * 6 5 3 8 8 C 1.50439 * 109.56643 * 202.64998 * 6 5 3 9 9 O 1.21285 * 118.48730 * 47.44142 * 8 6 5 10 10 N 1.33378 * 123.02512 * 227.46797 * 8 6 5 11 11 C 1.45654 * 124.58517 * 4.31378 * 10 8 6 12 12 C 1.53461 * 110.74016 * 337.98113 * 11 10 8 13 13 N 1.47039 * 109.57289 * 83.24167 * 6 5 3 14 14 C 1.34775 * 121.35410 * 342.53147 * 13 6 5 15 15 O 1.21693 * 120.00006 * 354.81168 * 14 13 6 16 16 C 1.46376 * 120.00310 * 174.80205 * 14 13 6 17 17 H 1.08002 * 119.99622 * 6.56940 * 16 14 13 18 18 C 1.40049 * 119.99979 * 186.57183 * 16 14 13 19 19 N 1.30670 * 120.00373 * 6.64431 * 18 16 14 20 20 Si 1.86802 * 119.99744 * 186.64620 * 18 16 14 21 21 H 1.48496 * 109.47175 * 265.00980 * 20 18 16 22 22 H 1.48504 * 109.47042 * 25.01017 * 20 18 16 23 23 H 1.48505 * 109.47138 * 145.00949 * 20 18 16 24 24 H 1.09001 * 109.47073 * 300.00334 * 1 2 3 25 25 H 1.08998 * 109.47100 * 59.99815 * 1 2 3 26 26 H 1.08992 * 109.47093 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47419 * 65.50739 * 5 3 2 28 28 H 1.09004 * 109.46642 * 305.50250 * 5 3 2 29 29 H 0.96999 * 117.70924 * 184.29671 * 10 8 6 30 30 H 1.08997 * 109.21625 * 98.43934 * 11 10 8 31 31 H 1.08996 * 109.21303 * 217.81005 * 11 10 8 32 32 H 1.08996 * 109.85277 * 287.31583 * 12 11 10 33 33 H 1.08998 * 109.84147 * 166.50448 * 12 11 10 34 34 H 0.96999 * 119.99939 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0005 2.7355 0.1381 7 1 3.3141 3.3746 -0.4174 8 6 5.3949 2.9001 -0.4020 9 8 5.6576 2.4159 -1.4825 10 7 6.3557 3.5535 0.2529 11 6 6.2140 4.1065 1.5929 12 6 4.7350 4.3337 1.9334 13 7 3.9914 3.1194 1.5575 14 6 3.3248 2.3928 2.4763 15 8 2.6372 1.4519 2.1258 16 6 3.4280 2.7352 3.8957 17 1 3.9503 3.6307 4.1985 18 6 2.8496 1.9015 4.8609 19 7 2.3318 0.7548 4.5083 20 14 2.8182 2.4290 6.6527 21 1 3.9858 1.8459 7.3609 22 1 2.8794 3.9106 6.7337 23 1 1.5642 1.9500 7.2878 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9511 0.8687 -0.9360 28 1 3.9607 0.6978 0.8358 29 1 7.2087 3.6683 -0.1945 30 1 6.6482 3.4144 2.3144 31 1 6.7426 5.0582 1.6459 32 1 4.3531 5.1871 1.3732 33 1 4.6253 4.5160 3.0025 34 1 1.9308 0.1776 5.1769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274717081.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:10 Heat of formation + Delta-G solvation = -159.331405 kcal Electronic energy + Delta-G solvation = -22163.456765 eV Core-core repulsion = 18675.440379 eV Total energy + Delta-G solvation = -3488.016386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.00103 -40.82742 -39.36208 -37.30191 -37.09706 -35.20288 -34.45306 -32.92407 -29.82233 -28.88448 -27.97750 -26.38854 -24.36381 -22.34145 -21.67733 -20.19786 -18.91489 -18.50864 -18.18283 -17.85414 -17.60293 -17.15037 -16.98730 -16.14560 -15.89953 -15.76319 -15.35306 -14.69445 -14.58230 -14.27447 -13.98861 -13.74852 -13.52267 -13.17914 -13.01156 -12.87009 -12.69414 -12.62203 -12.50505 -12.03303 -11.99828 -11.60731 -11.33938 -11.31646 -10.87974 -10.11164 -9.57120 -9.20419 -8.28967 -6.80965 1.32310 1.41992 1.44332 1.58419 1.62799 2.02946 2.17534 2.28835 2.47933 2.61325 3.44711 3.57807 3.70306 3.98397 4.07708 4.29656 4.34102 4.36340 4.39651 4.41574 4.61891 4.69033 4.80953 4.82022 5.10171 5.39727 5.50550 5.66327 5.81590 6.05916 6.16942 6.22524 6.89820 7.06345 7.09534 7.33005 8.41757 8.64762 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.009770 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.432675 B = 2865.270886 C = 4458.038948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.373 6.373 3 C 0.514 3.486 4 O -0.563 6.563 5 C -0.080 4.080 6 C 0.150 3.850 7 H 0.090 0.910 8 C 0.524 3.476 9 O -0.582 6.582 10 N -0.696 5.696 11 C 0.099 3.901 12 C 0.095 3.905 13 N -0.643 5.643 14 C 0.550 3.450 15 O -0.597 6.597 16 C -0.559 4.559 17 H 0.101 0.899 18 C 0.036 3.964 19 N -0.813 5.813 20 Si 0.989 3.011 21 H -0.261 1.261 22 H -0.247 1.247 23 H -0.283 1.283 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.128 0.872 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.411 0.589 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 5.873 -2.235 8.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.289 6.289 3 C 0.362 3.638 4 O -0.456 6.456 5 C -0.118 4.118 6 C 0.042 3.958 7 H 0.108 0.892 8 C 0.309 3.691 9 O -0.463 6.463 10 N -0.347 5.347 11 C -0.025 4.025 12 C -0.028 4.028 13 N -0.382 5.382 14 C 0.358 3.642 15 O -0.485 6.485 16 C -0.595 4.595 17 H 0.119 0.881 18 C -0.180 4.180 19 N -0.442 5.442 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.170 1.170 23 H -0.209 1.209 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.146 0.854 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.248 0.752 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.542 5.221 -2.788 8.108 hybrid contribution -0.308 0.046 0.672 0.740 sum 5.234 5.267 -2.116 7.721 Atomic orbital electron populations 1.23251 0.75906 1.04701 1.01156 1.86381 1.24289 1.33635 1.84627 1.22730 0.91564 0.80855 0.68627 1.90487 1.67661 1.37137 1.50313 1.21156 0.89080 0.96983 1.04608 1.20673 0.93474 0.95875 0.85751 0.89223 1.20036 0.87248 0.77370 0.84411 1.90700 1.82187 1.50020 1.23394 1.45183 1.15424 1.55651 1.18438 1.22099 0.97305 1.01275 0.81845 1.22247 0.90089 0.86514 1.03922 1.48250 1.55959 1.29435 1.04545 1.18612 0.78120 0.80773 0.86716 1.90294 1.44969 1.33633 1.79607 1.21385 1.38227 1.10950 0.88914 0.88100 1.26830 0.92029 0.93525 1.05640 1.70129 1.28177 1.09238 1.36646 0.85122 0.78151 0.80140 0.75672 1.18606 1.16962 1.20901 0.94773 0.91564 0.85370 0.87663 0.88583 0.75189 0.91016 0.84923 0.90743 0.86669 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 10.56 113.37 1.20 2.80 16 2 O -0.37 -17.12 10.57 -47.63 -0.50 -17.62 16 3 C 0.51 25.19 4.93 71.24 0.35 25.54 16 4 O -0.56 -29.73 14.77 28.60 0.42 -29.30 16 5 C -0.08 -3.57 4.89 29.85 0.15 -3.42 16 6 C 0.15 6.15 2.83 44.06 0.12 6.27 16 7 H 0.09 3.85 7.14 -2.39 -0.02 3.83 16 8 C 0.52 18.42 7.35 87.79 0.65 19.07 16 9 O -0.58 -22.99 16.82 -3.05 -0.05 -23.04 16 10 N -0.70 -17.84 5.42 -466.29 -2.53 -20.37 16 11 C 0.10 2.13 7.35 86.69 0.64 2.76 16 12 C 0.09 2.81 6.46 86.39 0.56 3.37 16 13 N -0.64 -27.10 2.97 -803.38 -2.38 -29.49 16 14 C 0.55 29.04 7.17 86.36 0.62 29.66 16 15 O -0.60 -35.54 8.98 20.76 0.19 -35.35 16 16 C -0.56 -28.35 8.90 24.83 0.22 -28.13 16 17 H 0.10 4.39 5.71 -2.91 -0.02 4.38 16 18 C 0.04 1.86 5.49 85.31 0.47 2.32 16 19 N -0.81 -46.47 11.90 21.84 0.26 -46.21 16 20 Si 0.99 38.04 29.56 68.60 2.03 40.06 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 24 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 25 H 0.07 2.19 8.13 -2.39 -0.02 2.17 16 26 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 27 H 0.11 4.25 7.22 -2.39 -0.02 4.23 16 28 H 0.10 4.80 6.44 -2.39 -0.02 4.78 16 29 H 0.41 8.30 8.80 -92.71 -0.82 7.49 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.12 3.39 5.42 -2.39 -0.01 3.37 16 34 H 0.27 14.36 8.29 -92.71 -0.77 13.59 16 Total: -1.00 -77.05 286.07 2.74 -74.31 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.34 Total: 26.78 kcal Atomic # 6 Polarization: 55.27 SS G_CDS: 4.97 Total: 60.24 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -4.65 Total: -96.07 kcal Atomic # 8 Polarization: -105.38 SS G_CDS: 0.05 Total: -105.33 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.06 kcal Total: -77.05 2.74 -74.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274717081.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.016 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds