Wall clock time and date at job start Mon Mar 30 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47156 * 2 1 4 4 N 1.46498 * 109.47265 * 180.02562 * 3 2 1 5 5 C 1.36822 * 120.00347 * 263.20030 * 4 3 2 6 6 H 1.08007 * 120.00014 * 358.63002 * 5 4 3 7 7 C 1.39076 * 120.00339 * 178.62914 * 5 4 3 8 8 N 1.31346 * 119.99556 * 89.08124 * 7 5 4 9 9 Si 1.86795 * 119.99958 * 269.08198 * 7 5 4 10 10 H 1.48499 * 109.47392 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47068 * 120.00204 * 9 7 5 12 12 H 1.48505 * 109.47052 * 239.99445 * 9 7 5 13 13 C 1.34779 * 120.00036 * 83.19742 * 4 3 2 14 14 O 1.21594 * 120.00483 * 182.86899 * 13 4 3 15 15 C 1.47739 * 119.99730 * 2.86882 * 13 4 3 16 16 N 1.32900 * 119.73013 * 353.97105 * 15 13 4 17 17 C 1.31388 * 121.67765 * 180.02562 * 16 15 13 18 18 C 1.38985 * 120.94134 * 359.97438 * 17 16 15 19 19 F 1.35099 * 120.32275 * 180.02562 * 18 17 16 20 20 C 1.38755 * 119.35610 * 0.02562 * 18 17 16 21 21 C 1.38789 * 118.45831 * 359.97438 * 20 18 17 22 22 F 1.35105 * 120.49042 * 179.97438 * 21 20 18 23 23 H 1.08999 * 109.47152 * 180.02562 * 1 2 3 24 24 H 1.09011 * 109.46782 * 300.00045 * 1 2 3 25 25 H 1.09005 * 109.47359 * 59.99491 * 1 2 3 26 26 H 1.08995 * 109.46903 * 240.00251 * 2 1 3 27 27 H 1.08999 * 109.47326 * 119.99802 * 2 1 3 28 28 H 1.09000 * 109.47049 * 59.99853 * 3 2 1 29 29 H 1.08999 * 109.46841 * 300.00099 * 3 2 1 30 30 H 0.96997 * 119.99548 * 184.91777 * 8 7 5 31 31 H 1.07995 * 119.52719 * 180.27852 * 17 16 15 32 32 H 1.07997 * 120.77615 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1897 1.5827 1.1757 6 1 3.6503 1.7155 2.1019 7 6 5.5801 1.5541 1.1786 8 7 6.2601 2.6658 1.0140 9 14 6.4805 -0.0651 1.4168 10 1 5.4925 -1.1616 1.5801 11 1 7.3315 -0.3374 0.2306 12 1 7.3336 0.0167 2.6296 13 6 4.1784 1.3045 -1.1599 14 8 5.3932 1.2521 -1.1550 15 6 3.4405 1.2168 -2.4368 16 7 2.1131 1.1536 -2.4279 17 6 1.4186 1.0742 -3.5405 18 6 2.0512 1.0538 -4.7778 19 9 1.3248 0.9724 -5.9140 20 6 3.4361 1.1178 -4.8349 21 6 4.1440 1.2011 -3.6440 22 9 5.4935 1.2649 -3.6517 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.2272 2.6369 0.9446 31 1 0.3406 1.0291 -3.4929 32 1 3.9513 1.1032 -5.7839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277010422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:37 Heat of formation + Delta-G solvation = -46.472948 kcal Electronic energy + Delta-G solvation = -21293.426516 eV Core-core repulsion = 17699.216524 eV Total energy + Delta-G solvation = -3594.209992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.60418 -48.12565 -39.70895 -37.86811 -34.95073 -33.37380 -31.77681 -31.66638 -30.06189 -26.27097 -25.07861 -23.54188 -22.89857 -21.22427 -20.06874 -17.93289 -17.61774 -17.05369 -16.18205 -15.64973 -15.27548 -14.99772 -14.78649 -14.72495 -14.42441 -13.93253 -13.74343 -13.66805 -12.82823 -12.67847 -12.52030 -12.45705 -12.01389 -11.75395 -11.61942 -11.41514 -11.02700 -10.83675 -10.61767 -10.22468 -10.12000 -9.31271 -9.05357 -8.87765 -8.44196 -8.24556 -7.70910 -7.14296 -3.54381 0.93280 1.42145 3.12730 3.35494 3.42705 3.59027 3.88186 4.29304 4.34180 4.59323 4.77752 4.79761 4.84510 5.03968 5.26179 5.58411 5.66454 5.75113 5.89167 6.03540 6.10702 6.20443 6.30903 6.38241 6.41345 6.53239 6.82123 6.91619 6.99069 7.20788 7.54978 8.16527 8.25492 8.85288 9.10906 9.71814 10.17833 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.008295 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.606077 B = 3374.768093 C = 4391.096308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.091 3.909 4 N -0.351 5.351 5 C -0.392 4.392 6 H 0.118 0.882 7 C 0.191 3.809 8 N -0.677 5.677 9 Si 0.869 3.131 10 H -0.263 1.263 11 H -0.264 1.264 12 H -0.289 1.289 13 C 0.379 3.621 14 O -0.591 6.591 15 C 0.073 3.927 16 N -0.440 5.440 17 C 0.071 3.929 18 C 0.010 3.990 19 F -0.141 7.141 20 C -0.150 4.150 21 C 0.092 3.908 22 F -0.110 7.110 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.290 0.710 31 H 0.161 0.839 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -2.253 -4.271 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.032 4.032 4 N -0.059 5.059 5 C -0.516 4.516 6 H 0.135 0.865 7 C -0.047 4.047 8 N -0.297 5.297 9 Si 0.690 3.310 10 H -0.187 1.187 11 H -0.188 1.188 12 H -0.217 1.217 13 C 0.181 3.819 14 O -0.483 6.483 15 C -0.062 4.062 16 N -0.154 5.154 17 C -0.090 4.090 18 C -0.013 4.013 19 F -0.120 7.120 20 C -0.176 4.176 21 C 0.068 3.932 22 F -0.088 7.088 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.178 0.822 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.980 -2.024 -3.490 8.942 hybrid contribution 0.895 -0.684 -1.198 1.644 sum -7.085 -2.708 -4.688 8.917 Atomic orbital electron populations 1.21624 0.96123 1.00707 1.01322 1.21672 0.94962 0.97539 1.01797 1.22268 0.80404 0.97425 1.03146 1.44139 1.05615 1.50384 1.05802 1.19254 0.89753 1.56015 0.86552 0.86480 1.25199 0.96506 0.96773 0.86220 1.70481 1.10852 1.31686 1.16665 0.87102 0.79715 0.86769 0.77373 1.18694 1.18823 1.21666 1.16617 0.86935 0.96894 0.81498 1.90552 1.11816 1.63567 1.82392 1.21682 0.89058 1.01028 0.94456 1.68373 1.06369 1.13615 1.26994 1.22888 1.00857 0.98796 0.86508 1.18311 0.88947 1.10866 0.83196 1.91442 1.77160 1.94321 1.49028 1.21325 0.93165 1.04413 0.98666 1.18099 0.78544 1.03689 0.92871 1.91564 1.27267 1.92932 1.97015 0.93519 0.93331 0.92634 0.91714 0.92620 0.92201 0.87068 0.89783 0.82195 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -2.08 5.61 -26.73 -0.15 -2.23 16 3 C 0.09 1.77 4.95 -4.04 -0.02 1.75 16 4 N -0.35 -8.51 2.63 -115.92 -0.31 -8.82 16 5 C -0.39 -9.93 9.48 -15.01 -0.14 -10.07 16 6 H 0.12 2.78 8.00 -52.48 -0.42 2.36 16 7 C 0.19 4.94 3.01 -17.45 -0.05 4.89 16 8 N -0.68 -17.76 13.57 55.50 0.75 -17.01 16 9 Si 0.87 20.63 28.18 -169.99 -4.79 15.84 16 10 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.26 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.38 9.85 7.52 -12.38 -0.09 9.76 16 14 O -0.59 -17.20 11.27 5.28 0.06 -17.14 16 15 C 0.07 1.62 6.53 -82.97 -0.54 1.08 16 16 N -0.44 -8.20 4.35 -9.71 -0.04 -8.24 16 17 C 0.07 1.11 11.17 -17.46 -0.20 0.91 16 18 C 0.01 0.16 7.35 -39.11 -0.29 -0.13 16 19 F -0.14 -2.10 17.28 2.25 0.04 -2.06 16 20 C -0.15 -2.57 10.14 -39.19 -0.40 -2.97 16 21 C 0.09 1.94 7.31 -38.82 -0.28 1.66 16 22 F -0.11 -2.56 15.56 2.25 0.04 -2.52 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.21 6.79 -51.93 -0.35 0.86 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.08 7.95 -51.93 -0.41 0.67 16 29 H 0.11 2.10 5.20 -52.94 -0.28 1.83 16 30 H 0.29 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 32 H 0.15 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 282.10 15.07 4.25 4.25 Total: -1.00 -29.07 282.10 -4.93 -33.99 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.13 Total: -1.47 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.79 Total: 3.17 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.41 Total: -34.07 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.06 Total: -17.14 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.07 Total: -4.58 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.79 Total: 15.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.07 -4.93 -33.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277010422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.479 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds