Wall clock time and date at job start Mon Mar 30 2020 00:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47156 * 2 1 4 4 N 1.46498 * 109.47265 * 180.02562 * 3 2 1 5 5 C 1.36822 * 120.00347 * 263.20030 * 4 3 2 6 6 H 1.08007 * 120.00014 * 358.63002 * 5 4 3 7 7 C 1.39076 * 120.00339 * 178.62914 * 5 4 3 8 8 N 1.31346 * 119.99556 * 89.08124 * 7 5 4 9 9 Si 1.86795 * 119.99958 * 269.08198 * 7 5 4 10 10 H 1.48499 * 109.47392 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47068 * 120.00204 * 9 7 5 12 12 H 1.48505 * 109.47052 * 239.99445 * 9 7 5 13 13 C 1.34779 * 120.00036 * 83.19742 * 4 3 2 14 14 O 1.21594 * 120.00483 * 182.86899 * 13 4 3 15 15 C 1.47739 * 119.99730 * 2.86882 * 13 4 3 16 16 N 1.32900 * 119.73013 * 353.97105 * 15 13 4 17 17 C 1.31388 * 121.67765 * 180.02562 * 16 15 13 18 18 C 1.38985 * 120.94134 * 359.97438 * 17 16 15 19 19 F 1.35099 * 120.32275 * 180.02562 * 18 17 16 20 20 C 1.38755 * 119.35610 * 0.02562 * 18 17 16 21 21 C 1.38789 * 118.45831 * 359.97438 * 20 18 17 22 22 F 1.35105 * 120.49042 * 179.97438 * 21 20 18 23 23 H 1.08999 * 109.47152 * 180.02562 * 1 2 3 24 24 H 1.09011 * 109.46782 * 300.00045 * 1 2 3 25 25 H 1.09005 * 109.47359 * 59.99491 * 1 2 3 26 26 H 1.08995 * 109.46903 * 240.00251 * 2 1 3 27 27 H 1.08999 * 109.47326 * 119.99802 * 2 1 3 28 28 H 1.09000 * 109.47049 * 59.99853 * 3 2 1 29 29 H 1.08999 * 109.46841 * 300.00099 * 3 2 1 30 30 H 0.96997 * 119.99548 * 184.91777 * 8 7 5 31 31 H 1.07995 * 119.52719 * 180.27852 * 17 16 15 32 32 H 1.07997 * 120.77615 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1897 1.5827 1.1757 6 1 3.6503 1.7155 2.1019 7 6 5.5801 1.5541 1.1786 8 7 6.2601 2.6658 1.0140 9 14 6.4805 -0.0651 1.4168 10 1 5.4925 -1.1616 1.5801 11 1 7.3315 -0.3374 0.2306 12 1 7.3336 0.0167 2.6296 13 6 4.1784 1.3045 -1.1599 14 8 5.3932 1.2521 -1.1550 15 6 3.4405 1.2168 -2.4368 16 7 2.1131 1.1536 -2.4279 17 6 1.4186 1.0742 -3.5405 18 6 2.0512 1.0538 -4.7778 19 9 1.3248 0.9724 -5.9140 20 6 3.4361 1.1178 -4.8349 21 6 4.1440 1.2011 -3.6440 22 9 5.4935 1.2649 -3.6517 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 7.2272 2.6369 0.9446 31 1 0.3406 1.0291 -3.4929 32 1 3.9513 1.1032 -5.7839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277010422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:37 Heat of formation + Delta-G solvation = -63.756638 kcal Electronic energy + Delta-G solvation = -21294.175993 eV Core-core repulsion = 17699.216524 eV Total energy + Delta-G solvation = -3594.959469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.99771 -49.87298 -41.37322 -39.56933 -36.66979 -35.15967 -33.30286 -33.22016 -31.69094 -27.84201 -26.66909 -25.08824 -24.48722 -22.66734 -21.68558 -19.66335 -19.15079 -18.66018 -17.85596 -17.19982 -16.84979 -16.82630 -16.35578 -16.30763 -15.99112 -15.46527 -15.37650 -15.28420 -14.36209 -14.32534 -14.12239 -14.00936 -13.67862 -13.34284 -13.23615 -12.80857 -12.67053 -12.47244 -12.08907 -12.02328 -11.48156 -10.91870 -10.80667 -10.54529 -10.13553 -9.86237 -9.62682 -9.02877 -5.48429 -0.56754 -0.09336 1.22977 1.44948 1.50441 1.96167 2.03959 2.50550 2.70609 2.94464 2.98088 3.19657 3.32830 3.64419 3.77140 4.13065 4.29741 4.41759 4.50497 4.65191 4.74658 4.80732 4.85010 5.04384 5.15136 5.22731 5.34527 5.45978 5.50996 5.73146 5.80678 6.47559 6.61026 7.12249 7.37776 7.88679 8.31501 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.008295 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.606077 B = 3374.768093 C = 4391.096308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 C 0.091 3.909 4 N -0.362 5.362 5 C -0.476 4.476 6 H 0.114 0.886 7 C 0.193 3.807 8 N -0.710 5.710 9 Si 0.891 3.109 10 H -0.268 1.268 11 H -0.296 1.296 12 H -0.266 1.266 13 C 0.362 3.638 14 O -0.633 6.633 15 C 0.063 3.937 16 N -0.426 5.426 17 C 0.080 3.920 18 C 0.060 3.940 19 F -0.119 7.119 20 C -0.135 4.135 21 C 0.071 3.929 22 F -0.129 7.129 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.291 0.709 31 H 0.215 0.785 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.868 -2.794 -7.722 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C -0.031 4.031 4 N -0.071 5.071 5 C -0.596 4.596 6 H 0.131 0.869 7 C -0.044 4.044 8 N -0.331 5.331 9 Si 0.713 3.287 10 H -0.193 1.193 11 H -0.223 1.223 12 H -0.192 1.192 13 C 0.161 3.839 14 O -0.528 6.528 15 C -0.073 4.073 16 N -0.138 5.138 17 C -0.082 4.082 18 C 0.037 3.963 19 F -0.098 7.098 20 C -0.162 4.162 21 C 0.048 3.952 22 F -0.108 7.108 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.103 0.897 31 H 0.231 0.769 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.621 -2.557 -6.871 13.740 hybrid contribution 1.663 -0.580 -0.904 1.980 sum -9.958 -3.137 -7.775 13.018 Atomic orbital electron populations 1.21575 0.92536 1.02117 1.02632 1.21597 0.97857 0.95587 1.00133 1.22453 0.78191 0.98916 1.03544 1.44053 1.07114 1.51048 1.04846 1.18974 0.89685 1.63782 0.87136 0.86900 1.25501 0.97195 0.97057 0.84608 1.70572 1.10995 1.32807 1.18684 0.86781 0.78801 0.86479 0.76660 1.19279 1.22338 1.19173 1.17300 0.87005 0.96504 0.83067 1.90493 1.13941 1.64553 1.83766 1.21483 0.90550 1.01682 0.93535 1.68396 1.04668 1.12057 1.28706 1.23766 1.03033 0.96189 0.85175 1.18439 0.88461 1.05491 0.83892 1.91538 1.76544 1.93582 1.48109 1.21650 0.93741 1.02199 0.98565 1.18465 0.78114 1.04708 0.93955 1.91524 1.28816 1.93292 1.97132 0.92040 0.92364 0.90995 0.93341 0.94410 0.91779 0.86421 0.89735 0.76901 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.91 71.98 0.71 -2.30 16 2 C -0.11 -3.78 5.61 30.60 0.17 -3.61 16 3 C 0.09 3.53 4.95 86.38 0.43 3.96 16 4 N -0.36 -18.27 2.63 -638.93 -1.68 -19.95 16 5 C -0.48 -25.83 9.48 84.12 0.80 -25.03 16 6 H 0.11 5.88 8.00 -2.91 -0.02 5.86 16 7 C 0.19 10.65 3.01 84.97 0.26 10.91 16 8 N -0.71 -39.83 13.57 21.68 0.29 -39.53 16 9 Si 0.89 44.72 28.18 68.60 1.93 46.66 16 10 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.30 -16.27 7.11 99.48 0.71 -15.57 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.36 19.39 7.52 86.75 0.65 20.05 16 14 O -0.63 -38.70 11.27 -4.01 -0.05 -38.74 16 15 C 0.06 2.71 6.53 41.86 0.27 2.99 16 16 N -0.43 -14.29 4.35 -184.63 -0.80 -15.09 16 17 C 0.08 1.96 11.17 84.94 0.95 2.91 16 18 C 0.06 1.48 7.35 22.57 0.17 1.65 16 19 F -0.12 -2.58 17.28 44.97 0.78 -1.81 16 20 C -0.14 -3.92 10.14 22.53 0.23 -3.69 16 21 C 0.07 2.85 7.31 22.76 0.17 3.01 16 22 F -0.13 -6.02 15.56 44.97 0.70 -5.32 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.05 1.74 6.79 -2.39 -0.02 1.72 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 2.36 7.95 -2.39 -0.02 2.34 16 29 H 0.12 4.24 5.20 -4.38 -0.02 4.22 16 30 H 0.29 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.18 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -68.78 282.10 7.12 -61.66 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: 1.14 Total: 1.29 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 4.80 Total: 10.84 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -2.19 Total: -74.58 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.05 Total: -38.74 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 1.48 Total: -7.13 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.93 Total: 46.66 kcal Total: -68.78 7.12 -61.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277010422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.097 kcal (2) G-P(sol) polarization free energy of solvation -68.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds