Wall clock time and date at job start Mon Mar 30 2020 01:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47027 * 312.34409 * 3 2 1 5 5 C 1.37103 * 120.00114 * 276.15573 * 4 3 2 6 6 H 1.07998 * 119.99913 * 139.70659 * 5 4 3 7 7 C 1.38952 * 120.00008 * 319.70265 * 5 4 3 8 8 N 1.31414 * 119.99337 * 156.38048 * 7 5 4 9 9 Si 1.86789 * 119.99904 * 336.38084 * 7 5 4 10 10 H 1.48500 * 109.47139 * 95.19503 * 9 7 5 11 11 H 1.48504 * 109.47151 * 215.19330 * 9 7 5 12 12 H 1.48497 * 109.47539 * 335.19397 * 9 7 5 13 13 C 1.34779 * 120.00061 * 96.16212 * 4 3 2 14 14 O 1.21292 * 119.99994 * 179.97438 * 13 4 3 15 15 C 1.50699 * 119.99599 * 0.26717 * 13 4 3 16 16 C 1.54341 * 110.82416 * 292.69956 * 15 13 4 17 17 C 1.51369 * 105.16865 * 215.42763 * 16 15 13 18 18 C 1.38505 * 130.38972 * 197.19045 * 17 16 15 19 19 C 1.38097 * 120.21458 * 179.97438 * 18 17 16 20 20 C 1.38262 * 119.93729 * 0.02562 * 19 18 17 21 21 C 1.38105 * 119.93037 * 359.97438 * 20 19 18 22 22 C 1.38215 * 109.76307 * 17.18949 * 17 16 15 23 23 C 1.51368 * 109.75617 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.46653 * 192.34747 * 3 2 1 25 25 H 1.08991 * 109.47463 * 72.34704 * 3 2 1 26 26 H 0.97006 * 119.99412 * 180.02562 * 8 7 5 27 27 H 1.08999 * 110.72750 * 56.32511 * 15 13 4 28 28 H 1.08997 * 110.30329 * 334.35060 * 16 15 13 29 29 H 1.08995 * 110.30363 * 96.50772 * 16 15 13 30 30 H 1.07997 * 119.89115 * 0.02562 * 18 17 16 31 31 H 1.07998 * 120.03318 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.03528 * 179.97438 * 20 19 18 33 33 H 1.07998 * 119.88958 * 180.02562 * 21 20 19 34 34 H 1.08996 * 110.30651 * 223.88930 * 23 22 17 35 35 H 1.09005 * 110.38520 * 101.77572 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9295 1.0209 5 6 3.2050 -0.5209 2.3251 6 1 2.9231 -1.1889 3.1254 7 6 3.6776 0.7528 2.6172 8 7 3.3653 1.3236 3.7589 9 14 4.7568 1.6533 1.3870 10 1 3.9153 2.5471 0.5514 11 1 5.7674 2.4626 2.1144 12 1 5.4458 0.6665 0.5172 13 6 3.4401 -2.1869 0.6779 14 8 3.8451 -2.9568 1.5231 15 6 3.3269 -2.6341 -0.7567 16 6 1.8490 -2.6946 -1.1976 17 6 1.7647 -3.8768 -2.1391 18 6 0.7942 -4.2181 -3.0666 19 6 0.9316 -5.3626 -3.8270 20 6 2.0408 -6.1714 -3.6624 21 6 3.0095 -5.8327 -2.7381 22 6 2.8735 -4.6853 -1.9746 23 6 3.7793 -4.1015 -0.9116 24 1 2.9708 1.0047 0.2198 25 1 2.9715 -0.3108 -0.9792 26 1 3.6949 2.2128 3.9627 27 1 3.9032 -1.9802 -1.4112 28 1 1.2029 -2.8520 -0.3340 29 1 1.5713 -1.7772 -1.7166 30 1 -0.0723 -3.5866 -3.1960 31 1 0.1729 -5.6261 -4.5491 32 1 2.1496 -7.0670 -4.2560 33 1 3.8758 -6.4648 -2.6104 34 1 4.8192 -4.1449 -1.2352 35 1 3.6540 -4.6366 0.0297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277186073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:36 Heat of formation + Delta-G solvation = 15.544139 kcal Electronic energy + Delta-G solvation = -20139.843156 eV Core-core repulsion = 17102.551957 eV Total energy + Delta-G solvation = -3037.291200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68577 -40.17820 -37.95269 -36.62381 -36.19406 -34.17090 -32.30937 -30.47319 -29.36740 -28.24977 -27.08653 -24.13817 -22.27639 -21.81586 -20.57706 -20.12099 -18.32977 -18.22837 -17.48392 -17.06913 -16.57936 -16.00044 -15.66887 -15.49840 -15.26128 -14.77351 -14.43986 -14.22618 -14.10171 -14.00906 -13.85913 -13.71832 -13.43488 -13.20389 -13.11180 -12.67141 -12.27310 -12.13139 -12.07610 -12.05417 -11.79999 -11.64103 -11.07228 -10.47998 -9.96904 -9.69023 -9.40818 -8.51149 -6.21487 0.45783 0.50759 1.24354 1.39125 1.45618 1.53229 1.74670 1.83400 2.22094 2.67422 2.83190 2.86915 3.15102 3.35382 3.54238 3.87501 3.97603 4.06317 4.16423 4.18448 4.22273 4.32665 4.42705 4.60760 4.69150 4.71482 4.84966 4.93341 5.09277 5.20706 5.27402 5.47760 5.58176 5.64084 5.76886 6.03679 6.14398 6.41911 6.51464 6.87487 7.16126 7.71134 8.65627 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028538 B = 0.005611 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.926715 B = 4989.142428 C = 5447.658071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.220 3.780 3 C 0.177 3.823 4 N -0.470 5.470 5 C -0.346 4.346 6 H 0.040 0.960 7 C 0.017 3.983 8 N -0.905 5.905 9 Si 0.928 3.072 10 H -0.227 1.227 11 H -0.286 1.286 12 H -0.232 1.232 13 C 0.483 3.517 14 O -0.591 6.591 15 C -0.105 4.105 16 C -0.068 4.068 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.103 4.103 23 C -0.064 4.064 24 H 0.112 0.888 25 H 0.169 0.831 26 H 0.282 0.718 27 H 0.144 0.856 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.137 0.863 34 H 0.097 0.903 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -6.987 -20.282 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.098 4.098 3 C 0.051 3.949 4 N -0.193 5.193 5 C -0.473 4.473 6 H 0.058 0.942 7 C -0.187 4.187 8 N -0.541 5.541 9 Si 0.748 3.252 10 H -0.151 1.151 11 H -0.213 1.213 12 H -0.154 1.154 13 C 0.274 3.726 14 O -0.473 6.473 15 C -0.126 4.126 16 C -0.105 4.105 17 C -0.111 4.111 18 C -0.134 4.134 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.133 4.133 22 C -0.103 4.103 23 C -0.102 4.102 24 H 0.129 0.871 25 H 0.186 0.814 26 H 0.092 0.908 27 H 0.162 0.838 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.146 0.854 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.132 -7.223 -19.682 20.966 hybrid contribution 0.568 0.586 0.996 1.288 sum 0.436 -6.637 -18.687 19.835 Atomic orbital electron populations 1.81072 1.13989 1.09592 1.09719 1.30046 0.95904 0.92102 0.91797 1.19918 0.80518 0.97903 0.96563 1.43582 1.57508 1.10941 1.07220 1.18520 1.46429 1.00189 0.82169 0.94156 1.26266 0.96375 0.97045 0.98999 1.69907 1.41350 1.15659 1.27196 0.86119 0.79757 0.79599 0.79756 1.15134 1.21255 1.15448 1.21030 0.78387 0.82254 0.90978 1.90554 1.49305 1.53656 1.53784 1.22091 0.98336 0.99517 0.92663 1.21007 0.94608 0.97824 0.97110 1.20561 0.96019 0.97153 0.97392 1.20858 0.98437 0.98274 0.95859 1.21362 0.98830 0.94187 0.99782 1.21399 0.93707 1.00426 0.98197 1.20903 1.00562 0.95806 0.96037 1.20690 0.96451 0.96003 0.97136 1.20852 0.99606 0.92687 0.97031 0.87074 0.81401 0.90842 0.83827 0.93027 0.88617 0.85438 0.83378 0.83111 0.84542 0.88502 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.41 18.54 20.01 0.37 -18.04 16 2 C 0.22 7.98 13.53 89.44 1.21 9.19 16 3 C 0.18 5.79 4.44 84.57 0.38 6.16 16 4 N -0.47 -20.61 2.09 -645.43 -1.35 -21.96 16 5 C -0.35 -19.11 9.22 84.04 0.77 -18.34 16 6 H 0.04 2.69 7.96 -2.91 -0.02 2.67 16 7 C 0.02 0.88 5.30 84.93 0.45 1.33 16 8 N -0.91 -51.78 13.96 21.66 0.30 -51.47 16 9 Si 0.93 35.87 25.28 68.60 1.73 37.60 16 10 H -0.23 -7.28 6.66 99.48 0.66 -6.62 16 11 H -0.29 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.23 -8.09 7.11 99.48 0.71 -7.38 16 13 C 0.48 20.48 6.90 87.66 0.60 21.09 16 14 O -0.59 -30.86 15.41 -3.07 -0.05 -30.91 16 15 C -0.10 -3.11 2.46 -10.63 -0.03 -3.14 16 16 C -0.07 -1.94 4.60 30.52 0.14 -1.80 16 17 C -0.11 -2.93 6.14 -19.59 -0.12 -3.05 16 18 C -0.12 -2.61 10.04 22.30 0.22 -2.39 16 19 C -0.12 -2.26 10.05 22.24 0.22 -2.04 16 20 C -0.12 -2.11 10.05 22.24 0.22 -1.89 16 21 C -0.12 -2.43 10.04 22.30 0.22 -2.20 16 22 C -0.10 -2.66 6.14 -19.60 -0.12 -2.78 16 23 C -0.06 -1.85 6.11 30.51 0.19 -1.67 16 24 H 0.11 3.60 3.49 -2.39 -0.01 3.59 16 25 H 0.17 3.52 5.58 -2.39 -0.01 3.51 16 26 H 0.28 14.71 8.31 -92.70 -0.77 13.94 16 27 H 0.14 3.07 7.28 -2.39 -0.02 3.05 16 28 H 0.05 1.81 7.88 -2.39 -0.02 1.79 16 29 H 0.10 2.31 6.35 -2.39 -0.02 2.29 16 30 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.45 6.98 -2.38 -0.02 2.43 16 Total: -1.00 -73.53 295.35 6.46 -67.07 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.08 Total: 19.24 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.37 Total: -1.52 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -0.67 Total: -91.47 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 1.73 Total: 37.60 kcal Total: -73.53 6.46 -67.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277186073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.611 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds