Wall clock time and date at job start Mon Mar 30 2020 01:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09005 * 110.53366 * 42.54682 * 6 4 3 8 8 N 1.47308 * 110.60319 * 165.54464 * 6 4 3 9 9 C 1.34535 * 106.61817 * 118.52568 * 8 6 4 10 10 O 1.21534 * 123.77095 * 179.97438 * 9 8 6 11 11 N 1.33792 * 112.45572 * 0.02562 * 9 8 6 12 12 C 1.46500 * 124.17607 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47259 * 270.04513 * 12 11 9 14 14 C 1.50702 * 109.47100 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00062 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00164 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99933 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99926 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47223 * 89.99132 * 18 16 14 20 20 H 1.48500 * 109.47001 * 209.99736 * 18 16 14 21 21 H 1.48507 * 109.46984 * 329.99304 * 18 16 14 22 22 C 1.34767 * 111.64417 * 359.97438 * 11 9 8 23 23 O 1.21236 * 127.15439 * 179.97438 * 22 11 9 24 24 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 25 25 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 27 27 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 28 28 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 29 29 H 0.96995 * 126.69191 * 298.51084 * 8 6 4 30 30 H 1.09006 * 109.46811 * 30.04369 * 12 11 9 31 31 H 1.09000 * 109.46943 * 150.03887 * 12 11 9 32 32 H 1.09006 * 109.47092 * 299.99684 * 13 12 11 33 33 H 1.09000 * 109.47654 * 59.99810 * 13 12 11 34 34 H 0.97003 * 119.99682 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.3726 3.5748 0.6996 8 7 5.3530 2.9043 0.3482 9 6 6.0136 3.4059 -0.7110 10 8 7.2224 3.5221 -0.7602 11 7 5.1910 3.7635 -1.7038 12 6 5.6370 4.3390 -2.9751 13 6 5.6895 5.8633 -2.8543 14 6 6.1476 6.4553 -4.1623 15 1 6.3779 5.8090 -4.9964 16 6 6.2718 7.8221 -4.2945 17 7 6.6721 8.3387 -5.4358 18 14 5.8729 8.9400 -2.8521 19 1 7.0973 9.1568 -2.0403 20 1 5.3777 10.2449 -3.3594 21 1 4.8262 8.3070 -2.0099 22 6 3.9016 3.5289 -1.3898 23 8 2.9287 3.7464 -2.0798 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 5.7436 2.5837 1.1761 30 1 6.6296 3.9593 -3.2174 31 1 4.9389 4.0608 -3.7646 32 1 4.6968 6.2430 -2.6120 33 1 6.3876 6.1415 -2.0648 34 1 6.7598 9.3002 -5.5286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280258193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:25 Heat of formation + Delta-G solvation = -123.659143 kcal Electronic energy + Delta-G solvation = -20806.415504 eV Core-core repulsion = 17319.945983 eV Total energy + Delta-G solvation = -3486.469521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.59588 -40.58293 -38.54779 -37.19958 -35.97049 -35.27346 -32.92771 -32.15926 -30.47499 -28.92652 -25.76457 -24.05037 -22.96377 -21.99585 -21.33721 -20.10433 -18.58596 -18.10221 -17.30044 -17.18530 -16.96851 -16.44451 -15.50226 -15.45635 -14.99906 -14.60949 -14.25044 -14.08806 -13.92100 -13.64190 -13.29906 -13.14516 -12.74515 -12.33953 -11.99873 -11.87015 -11.31942 -11.10943 -11.05756 -10.92773 -10.69013 -10.34280 -10.12801 -9.87277 -9.76750 -9.36842 -9.24060 -8.59480 -6.10100 -4.10296 1.27366 1.56079 2.12901 2.37013 2.99217 3.10631 3.29571 3.36322 3.39045 3.79597 4.05199 4.40992 4.47231 4.56029 4.59027 4.88630 5.10398 5.23860 5.28514 5.41680 5.60893 5.71735 5.88794 5.96809 6.05144 6.37594 6.61537 6.96437 7.07110 7.20166 7.29464 7.31854 7.65473 8.13588 8.41644 8.91504 9.50457 11.02653 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.004630 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.665595 B = 6045.890212 C = 6476.941386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.343 6.343 4 C 0.469 3.531 5 O -0.483 6.483 6 C 0.097 3.903 7 H 0.162 0.838 8 N -0.711 5.711 9 C 0.706 3.294 10 O -0.521 6.521 11 N -0.566 5.566 12 C 0.128 3.872 13 C -0.025 4.025 14 C -0.522 4.522 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.879 3.121 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.267 1.267 22 C 0.533 3.467 23 O -0.442 6.442 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.443 0.557 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.021 0.979 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 -15.105 15.104 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.259 6.259 4 C 0.308 3.692 5 O -0.369 6.369 6 C -0.015 4.015 7 H 0.179 0.821 8 N -0.378 5.378 9 C 0.406 3.594 10 O -0.393 6.393 11 N -0.312 5.312 12 C 0.010 3.990 13 C -0.063 4.063 14 C -0.561 4.561 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.706 3.294 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.191 1.191 22 C 0.316 3.684 23 O -0.310 6.310 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.288 0.712 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.019 -15.025 14.447 23.577 hybrid contribution -0.003 0.381 1.168 1.228 sum -11.022 -14.644 15.615 24.078 Atomic orbital electron populations 1.21822 0.92109 1.03142 1.03983 1.23157 0.95783 0.79319 1.02897 1.86532 1.22903 1.33167 1.83257 1.22945 0.81612 0.91029 0.73613 1.90737 1.60488 1.41835 1.43819 1.21521 0.86074 0.93774 1.00163 0.82062 1.45253 1.04084 1.68808 1.19626 1.15856 0.85517 0.77931 0.80057 1.91042 1.10259 1.58093 1.79857 1.46739 1.07543 1.57715 1.19186 1.22106 1.01428 0.96612 0.78865 1.19917 0.97495 0.89811 0.99056 1.20831 1.45925 0.92595 0.96723 0.90477 1.24939 0.94276 0.98043 0.95702 1.69893 1.46778 1.12312 1.24549 0.86784 0.79265 0.80196 0.83114 1.20087 1.21142 1.19142 1.19931 0.83896 0.78101 0.86433 1.90864 1.35910 1.48982 1.55211 0.91002 0.90026 0.91301 0.90835 0.90906 0.71170 0.88645 0.88919 0.95921 0.96068 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.29 37.15 0.38 -0.50 16 2 C 0.06 0.50 6.19 37.15 0.23 0.73 16 3 O -0.34 -3.60 10.22 -39.26 -0.40 -4.00 16 4 C 0.47 5.43 7.31 36.00 0.26 5.70 16 5 O -0.48 -6.59 16.31 -18.76 -0.31 -6.89 16 6 C 0.10 1.08 4.22 -69.36 -0.29 0.78 16 7 H 0.16 1.16 8.14 -51.93 -0.42 0.74 16 8 N -0.71 -8.36 5.82 -60.33 -0.35 -8.72 16 9 C 0.71 11.71 8.62 -88.01 -0.76 10.95 16 10 O -0.52 -10.42 17.48 5.34 0.09 -10.33 16 11 N -0.57 -9.87 2.60 -120.73 -0.31 -10.18 16 12 C 0.13 2.58 5.64 -4.05 -0.02 2.56 16 13 C -0.02 -0.59 4.37 -27.89 -0.12 -0.71 16 14 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 15 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 18 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.53 8.27 7.63 -10.56 -0.08 8.19 16 23 O -0.44 -7.84 17.76 5.60 0.10 -7.75 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.44 3.93 8.96 -40.82 -0.37 3.56 16 30 H 0.10 1.93 7.86 -51.93 -0.41 1.52 16 31 H 0.09 1.81 8.00 -51.93 -0.42 1.39 16 32 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 33 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 34 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -34.95 306.50 -5.37 -40.32 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.08 Total: -2.12 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -0.83 Total: 14.62 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.11 Total: -45.59 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.51 Total: -28.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.95 -5.37 -40.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280258193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.344 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds