Wall clock time and date at job start Mon Mar 30 2020 01:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09005 * 110.53366 * 42.54682 * 6 4 3 8 8 N 1.47308 * 110.60319 * 165.54464 * 6 4 3 9 9 C 1.34535 * 106.61817 * 118.52568 * 8 6 4 10 10 O 1.21534 * 123.77095 * 179.97438 * 9 8 6 11 11 N 1.33792 * 112.45572 * 0.02562 * 9 8 6 12 12 C 1.46500 * 124.17607 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47259 * 270.04513 * 12 11 9 14 14 C 1.50702 * 109.47100 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00062 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00164 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99933 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99926 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47223 * 89.99132 * 18 16 14 20 20 H 1.48500 * 109.47001 * 209.99736 * 18 16 14 21 21 H 1.48507 * 109.46984 * 329.99304 * 18 16 14 22 22 C 1.34767 * 111.64417 * 359.97438 * 11 9 8 23 23 O 1.21236 * 127.15439 * 179.97438 * 22 11 9 24 24 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 25 25 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 27 27 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 28 28 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 29 29 H 0.96995 * 126.69191 * 298.51084 * 8 6 4 30 30 H 1.09006 * 109.46811 * 30.04369 * 12 11 9 31 31 H 1.09000 * 109.46943 * 150.03887 * 12 11 9 32 32 H 1.09006 * 109.47092 * 299.99684 * 13 12 11 33 33 H 1.09000 * 109.47654 * 59.99810 * 13 12 11 34 34 H 0.97003 * 119.99682 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.3726 3.5748 0.6996 8 7 5.3530 2.9043 0.3482 9 6 6.0136 3.4059 -0.7110 10 8 7.2224 3.5221 -0.7602 11 7 5.1910 3.7635 -1.7038 12 6 5.6370 4.3390 -2.9751 13 6 5.6895 5.8633 -2.8543 14 6 6.1476 6.4553 -4.1623 15 1 6.3779 5.8090 -4.9964 16 6 6.2718 7.8221 -4.2945 17 7 6.6721 8.3387 -5.4358 18 14 5.8729 8.9400 -2.8521 19 1 7.0973 9.1568 -2.0403 20 1 5.3777 10.2449 -3.3594 21 1 4.8262 8.3070 -2.0099 22 6 3.9016 3.5289 -1.3898 23 8 2.9287 3.7464 -2.0798 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 5.7436 2.5837 1.1761 30 1 6.6296 3.9593 -3.2174 31 1 4.9389 4.0608 -3.7646 32 1 4.6968 6.2430 -2.6120 33 1 6.3876 6.1415 -2.0648 34 1 6.7598 9.3002 -5.5286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280258193.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:25 Heat of formation + Delta-G solvation = -149.624891 kcal Electronic energy + Delta-G solvation = -20807.541463 eV Core-core repulsion = 17319.945983 eV Total energy + Delta-G solvation = -3487.595480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.81147 -41.52453 -39.86824 -38.12714 -37.26028 -36.74391 -34.91014 -32.77475 -32.32384 -29.94237 -27.57421 -25.02026 -23.93921 -23.59846 -22.38073 -21.58098 -19.60691 -19.34432 -18.92280 -18.35055 -18.14243 -17.56579 -16.74656 -16.63534 -16.39688 -16.28014 -15.56853 -15.33606 -15.09548 -14.84828 -14.80758 -14.49983 -13.74486 -13.62628 -13.01560 -12.99489 -12.84251 -12.55120 -12.28455 -12.22755 -12.06858 -11.84129 -11.60279 -11.57132 -11.45601 -10.94972 -10.80757 -10.71550 -8.32982 -6.38988 0.12998 0.54710 1.10951 1.26467 1.34690 1.35699 1.46722 1.78021 1.99881 2.33166 2.65911 3.01912 3.21155 3.66293 3.90391 4.00899 4.03572 4.22091 4.30915 4.33122 4.37614 4.61221 4.76912 4.94407 5.06005 5.15338 5.22349 5.34099 5.52337 5.61297 5.86474 6.07520 6.17998 6.34274 6.66780 6.90413 7.25607 8.83030 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.004630 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.665595 B = 6045.890212 C = 6476.941386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.344 6.344 4 C 0.475 3.525 5 O -0.505 6.505 6 C 0.112 3.888 7 H 0.214 0.786 8 N -0.685 5.685 9 C 0.704 3.296 10 O -0.561 6.561 11 N -0.576 5.576 12 C 0.139 3.861 13 C -0.015 4.015 14 C -0.534 4.534 15 H 0.044 0.956 16 C 0.012 3.988 17 N -0.943 5.943 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.249 1.249 22 C 0.530 3.470 23 O -0.467 6.467 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.459 0.541 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.019 0.981 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 -15.531 17.944 27.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.260 6.260 4 C 0.315 3.685 5 O -0.393 6.393 6 C 0.001 3.999 7 H 0.231 0.769 8 N -0.353 5.353 9 C 0.405 3.595 10 O -0.436 6.436 11 N -0.321 5.321 12 C 0.019 3.981 13 C -0.053 4.053 14 C -0.572 4.572 15 H 0.062 0.938 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.769 3.231 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.173 1.173 22 C 0.315 3.685 23 O -0.336 6.336 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.308 0.692 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.756 -15.495 17.342 26.525 hybrid contribution 0.471 0.401 0.215 0.655 sum -12.285 -15.093 17.557 26.210 Atomic orbital electron populations 1.21852 0.90296 1.04535 1.03898 1.23465 0.97204 0.78137 1.03205 1.86534 1.21982 1.34749 1.82695 1.22859 0.81950 0.90619 0.73049 1.90743 1.61067 1.42526 1.44963 1.21643 0.85865 0.94343 0.98045 0.76921 1.45074 1.04194 1.67240 1.18769 1.15932 0.84973 0.77969 0.80623 1.91019 1.11949 1.59942 1.80683 1.46638 1.08810 1.58042 1.18649 1.21654 1.01417 0.94428 0.80614 1.19740 0.96976 0.92162 0.96468 1.21152 1.45633 0.92696 0.97754 0.93757 1.25896 0.94135 0.99865 0.98680 1.70034 1.48318 1.12954 1.26966 0.85723 0.79709 0.78096 0.79558 1.19272 1.20367 1.17296 1.20484 0.82668 0.77464 0.87841 1.90856 1.36349 1.49921 1.56441 0.91850 0.87915 0.90568 0.91521 0.89687 0.69178 0.89339 0.88797 0.95702 0.96246 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 71.98 0.74 -0.59 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.34 -6.28 10.22 -51.41 -0.53 -6.81 16 4 C 0.48 9.68 7.31 71.23 0.52 10.21 16 5 O -0.51 -12.66 16.31 21.94 0.36 -12.30 16 6 C 0.11 2.10 4.22 43.62 0.18 2.29 16 7 H 0.21 1.92 8.14 -2.38 -0.02 1.90 16 8 N -0.69 -14.16 5.82 -463.21 -2.69 -16.86 16 9 C 0.70 22.34 8.62 179.44 1.55 23.88 16 10 O -0.56 -22.16 17.48 -3.82 -0.07 -22.23 16 11 N -0.58 -19.43 2.60 -773.13 -2.01 -21.44 16 12 C 0.14 5.63 5.64 86.38 0.49 6.12 16 13 C -0.02 -0.73 4.37 29.85 0.13 -0.60 16 14 C -0.53 -30.83 9.66 25.60 0.25 -30.58 16 15 H 0.04 2.76 7.99 -2.91 -0.02 2.74 16 16 C 0.01 0.72 5.47 84.66 0.46 1.18 16 17 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 18 Si 0.95 44.48 27.47 68.60 1.88 46.36 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 22 C 0.53 15.36 7.63 87.94 0.67 16.03 16 23 O -0.47 -15.85 17.76 -2.89 -0.05 -15.90 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 28 H 0.08 0.97 8.13 -2.38 -0.02 0.95 16 29 H 0.46 6.67 8.96 -92.71 -0.83 5.83 16 30 H 0.09 3.67 7.86 -2.38 -0.02 3.66 16 31 H 0.09 3.73 8.00 -2.39 -0.02 3.71 16 32 H 0.02 1.17 7.20 -2.38 -0.02 1.15 16 33 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -76.94 306.50 2.88 -74.06 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.25 Total: 4.69 kcal Atomic # 6 Polarization: 23.67 SS G_CDS: 5.44 Total: 29.11 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -4.41 Total: -96.99 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.29 Total: -57.24 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -76.94 2.88 -74.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280258193.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.563 kcal (2) G-P(sol) polarization free energy of solvation -76.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds