Wall clock time and date at job start Mon Mar 30 2020 01:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39667 * 120.04960 * 260.27886 * 3 2 1 5 5 C 1.37920 * 119.67721 * 179.72106 * 4 3 2 6 6 C 1.38361 * 120.35462 * 0.57863 * 5 4 3 7 7 C 1.38691 * 120.70680 * 359.69925 * 6 5 4 8 8 C 1.39244 * 120.05540 * 80.55568 * 3 2 1 9 9 N 1.39897 * 111.59989 * 180.02562 * 7 6 5 10 10 C 1.34774 * 124.97640 * 179.97438 * 9 7 6 11 11 O 1.21284 * 119.99969 * 180.02562 * 10 9 7 12 12 C 1.50704 * 120.00145 * 0.02562 * 10 9 7 13 13 C 1.52995 * 109.47061 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47061 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00153 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99997 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00224 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47246 * 89.99790 * 18 16 14 20 20 H 1.48502 * 109.47172 * 209.99980 * 18 16 14 21 21 H 1.48505 * 109.46905 * 329.99809 * 18 16 14 22 22 C 1.46515 * 110.04574 * 359.97438 * 9 7 6 23 23 C 1.51266 * 130.77748 * 179.69668 * 6 5 4 24 24 H 1.08006 * 120.16402 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.82243 * 180.29562 * 5 4 3 26 26 H 1.08006 * 119.91749 * 0.02562 * 8 3 2 27 27 H 1.08999 * 109.47196 * 300.00216 * 12 10 9 28 28 H 1.08997 * 109.46867 * 59.99841 * 12 10 9 29 29 H 1.08999 * 109.47207 * 300.00106 * 13 12 10 30 30 H 1.09005 * 109.47338 * 60.00398 * 13 12 10 31 31 H 0.96999 * 119.99744 * 179.97438 * 17 16 14 32 32 H 1.08991 * 110.29527 * 241.06326 * 22 9 7 33 33 H 1.09002 * 110.29374 * 118.94102 * 22 9 7 34 34 H 1.09002 * 110.40909 * 298.78380 * 23 6 5 35 35 H 1.08998 * 110.40996 * 61.21728 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 0.2051 1.1916 5 6 4.6464 0.1984 1.1837 6 6 5.3380 0.0025 0.0015 7 6 4.6592 -0.1962 -1.1915 8 6 3.2654 -0.1968 -1.1889 9 7 5.5414 -0.3740 -2.2626 10 6 5.1715 -0.5873 -3.5409 11 8 6.0151 -0.7305 -4.4004 12 6 3.7097 -0.6479 -3.9023 13 6 3.5658 -0.8992 -5.4046 14 6 2.1040 -0.9604 -5.7659 15 1 1.3528 -0.8333 -5.0004 16 6 1.7256 -1.1798 -7.0734 17 7 2.6404 -1.3361 -8.0053 18 14 -0.0863 -1.2550 -7.5214 19 1 -0.5665 0.1058 -7.8717 20 1 -0.2716 -2.1599 -8.6842 21 1 -0.8613 -1.7708 -6.3643 22 6 6.9263 -0.2945 -1.7910 23 6 6.8239 -0.0428 -0.2780 24 1 2.7307 0.3635 2.1154 25 1 5.1895 0.3515 2.1046 26 1 2.7250 -0.3501 -2.1114 27 1 3.2325 -1.4584 -3.3514 28 1 3.2322 0.2972 -3.6442 29 1 4.0430 -0.0890 -5.9558 30 1 4.0432 -1.8446 -5.6623 31 1 2.3742 -1.4908 -8.9252 32 1 7.4445 0.5317 -2.2776 33 1 7.4457 -1.2333 -1.9836 34 1 7.2887 0.9084 -0.0184 35 1 7.2901 -0.8581 0.2751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291894694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:02 Heat of formation + Delta-G solvation = 24.500486 kcal Electronic energy + Delta-G solvation = -19523.935073 eV Core-core repulsion = 16487.032250 eV Total energy + Delta-G solvation = -3036.902823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25919 -38.81822 -37.17816 -35.71994 -33.80445 -32.93963 -30.98427 -29.97182 -29.70259 -26.11049 -24.06184 -23.57926 -22.41731 -20.79426 -20.23541 -18.11040 -17.17163 -16.47323 -16.39652 -15.91393 -15.11872 -14.73324 -14.61127 -14.37857 -14.03392 -13.96152 -13.59418 -13.07795 -12.84931 -12.78809 -12.49441 -12.34375 -12.18199 -11.96218 -11.84952 -11.54807 -10.97348 -10.93065 -10.58597 -10.37165 -10.09044 -9.79774 -9.42647 -9.15606 -9.06740 -8.37575 -7.92713 -6.01444 -4.06395 0.55581 1.07846 2.55157 2.63976 2.85172 3.07635 3.32044 3.38460 3.41781 3.72751 3.76172 4.19356 4.26319 4.44524 4.69358 4.87203 4.87342 4.94444 5.09884 5.28499 5.34152 5.49489 5.53474 5.65053 5.66047 5.84317 5.95409 5.98011 6.04682 6.11609 6.22125 6.58654 6.70451 7.42107 7.47235 7.66020 7.73214 7.97834 8.21618 8.37971 9.00649 9.58098 11.09406 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.005628 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.547947 B = 4974.306103 C = 6646.682838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.256 3.744 3 C 0.007 3.993 4 C -0.102 4.102 5 C -0.075 4.075 6 C -0.116 4.116 7 C 0.163 3.837 8 C -0.117 4.117 9 N -0.563 5.563 10 C 0.521 3.479 11 O -0.503 6.503 12 C -0.136 4.136 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.103 3.897 23 C -0.087 4.087 24 H 0.135 0.865 25 H 0.135 0.865 26 H 0.157 0.843 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 3.495 20.895 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.060 4.060 3 C 0.003 3.997 4 C -0.124 4.124 5 C -0.094 4.094 6 C -0.120 4.120 7 C 0.066 3.934 8 C -0.140 4.140 9 N -0.287 5.287 10 C 0.313 3.687 11 O -0.376 6.376 12 C -0.175 4.175 13 C -0.001 4.001 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.019 4.019 23 C -0.124 4.124 24 H 0.153 0.847 25 H 0.153 0.847 26 H 0.175 0.825 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.024 3.338 19.981 21.441 hybrid contribution -0.505 -0.054 -0.375 0.631 sum 6.519 3.284 19.605 20.920 Atomic orbital electron populations 1.81262 1.12001 1.08253 1.07090 1.25574 0.92524 0.93986 0.93924 1.15563 0.84303 1.05414 0.94384 1.20962 0.93765 1.00930 0.96700 1.20246 0.93068 0.99346 0.96703 1.20291 0.95638 1.03427 0.92676 1.18116 0.90459 0.97245 0.87627 1.21332 0.91637 1.01763 0.99242 1.46405 1.06338 1.69029 1.06901 1.21708 0.93637 0.74216 0.79109 1.90714 1.53939 1.46218 1.46689 1.22289 0.88350 1.02766 1.04127 1.18963 0.96965 0.98501 0.85718 1.21156 0.91713 1.50216 0.93653 0.92544 1.24994 0.97486 0.95116 0.96536 1.69992 1.32777 1.48567 1.01369 0.86597 0.85290 0.78003 0.78158 1.20574 1.21127 1.19803 1.22019 0.83051 1.03358 0.93470 1.21188 0.92428 1.03792 0.95014 0.84668 0.84730 0.82538 0.89297 0.89301 0.95586 0.95577 0.92857 0.89919 0.89920 0.88792 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.33 18.54 41.83 0.78 -5.55 16 2 C 0.26 3.31 15.32 -22.47 -0.34 2.96 16 3 C 0.01 0.08 5.72 -107.06 -0.61 -0.53 16 4 C -0.10 -0.81 9.76 -39.16 -0.38 -1.19 16 5 C -0.08 -0.53 10.02 -39.65 -0.40 -0.93 16 6 C -0.12 -1.06 6.23 -104.13 -0.65 -1.71 16 7 C 0.16 2.00 6.59 -83.59 -0.55 1.45 16 8 C -0.12 -1.45 8.57 -38.79 -0.33 -1.78 16 9 N -0.56 -8.10 3.13 -112.95 -0.35 -8.45 16 10 C 0.52 9.83 7.80 -10.98 -0.09 9.75 16 11 O -0.50 -11.33 16.27 5.55 0.09 -11.24 16 12 C -0.14 -2.70 3.46 -27.88 -0.10 -2.80 16 13 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 14 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.10 1.10 7.06 -3.66 -0.03 1.08 16 23 C -0.09 -0.63 6.93 -27.23 -0.19 -0.82 16 24 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 25 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 26 H 0.16 2.18 4.19 -52.48 -0.22 1.96 16 27 H 0.09 1.63 6.90 -51.93 -0.36 1.27 16 28 H 0.09 1.62 6.91 -51.93 -0.36 1.27 16 29 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -34.25 307.31 -7.19 -41.44 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -3.86 Total: -4.07 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -4.20 Total: -7.18 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 1.16 Total: -40.35 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.25 -7.19 -41.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291894694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.941 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds