Wall clock time and date at job start Mon Mar 30 2020 01:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39667 * 120.04960 * 260.27886 * 3 2 1 5 5 C 1.37920 * 119.67721 * 179.72106 * 4 3 2 6 6 C 1.38361 * 120.35462 * 0.57863 * 5 4 3 7 7 C 1.38691 * 120.70680 * 359.69925 * 6 5 4 8 8 C 1.39244 * 120.05540 * 80.55568 * 3 2 1 9 9 N 1.39897 * 111.59989 * 180.02562 * 7 6 5 10 10 C 1.34774 * 124.97640 * 179.97438 * 9 7 6 11 11 O 1.21284 * 119.99969 * 180.02562 * 10 9 7 12 12 C 1.50704 * 120.00145 * 0.02562 * 10 9 7 13 13 C 1.52995 * 109.47061 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47061 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00153 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99997 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00224 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47246 * 89.99790 * 18 16 14 20 20 H 1.48502 * 109.47172 * 209.99980 * 18 16 14 21 21 H 1.48505 * 109.46905 * 329.99809 * 18 16 14 22 22 C 1.46515 * 110.04574 * 359.97438 * 9 7 6 23 23 C 1.51266 * 130.77748 * 179.69668 * 6 5 4 24 24 H 1.08006 * 120.16402 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.82243 * 180.29562 * 5 4 3 26 26 H 1.08006 * 119.91749 * 0.02562 * 8 3 2 27 27 H 1.08999 * 109.47196 * 300.00216 * 12 10 9 28 28 H 1.08997 * 109.46867 * 59.99841 * 12 10 9 29 29 H 1.08999 * 109.47207 * 300.00106 * 13 12 10 30 30 H 1.09005 * 109.47338 * 60.00398 * 13 12 10 31 31 H 0.96999 * 119.99744 * 179.97438 * 17 16 14 32 32 H 1.08991 * 110.29527 * 241.06326 * 22 9 7 33 33 H 1.09002 * 110.29374 * 118.94102 * 22 9 7 34 34 H 1.09002 * 110.40909 * 298.78380 * 23 6 5 35 35 H 1.08998 * 110.40996 * 61.21728 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 0.2051 1.1916 5 6 4.6464 0.1984 1.1837 6 6 5.3380 0.0025 0.0015 7 6 4.6592 -0.1962 -1.1915 8 6 3.2654 -0.1968 -1.1889 9 7 5.5414 -0.3740 -2.2626 10 6 5.1715 -0.5873 -3.5409 11 8 6.0151 -0.7305 -4.4004 12 6 3.7097 -0.6479 -3.9023 13 6 3.5658 -0.8992 -5.4046 14 6 2.1040 -0.9604 -5.7659 15 1 1.3528 -0.8333 -5.0004 16 6 1.7256 -1.1798 -7.0734 17 7 2.6404 -1.3361 -8.0053 18 14 -0.0863 -1.2550 -7.5214 19 1 -0.5665 0.1058 -7.8717 20 1 -0.2716 -2.1599 -8.6842 21 1 -0.8613 -1.7708 -6.3643 22 6 6.9263 -0.2945 -1.7910 23 6 6.8239 -0.0428 -0.2780 24 1 2.7307 0.3635 2.1154 25 1 5.1895 0.3515 2.1046 26 1 2.7250 -0.3501 -2.1114 27 1 3.2325 -1.4584 -3.3514 28 1 3.2322 0.2972 -3.6442 29 1 4.0430 -0.0890 -5.9558 30 1 4.0432 -1.8446 -5.6623 31 1 2.3742 -1.4908 -8.9252 32 1 7.4445 0.5317 -2.2776 33 1 7.4457 -1.2333 -1.9836 34 1 7.2887 0.9084 -0.0184 35 1 7.2901 -0.8581 0.2751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291894694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:01 Heat of formation + Delta-G solvation = 3.215343 kcal Electronic energy + Delta-G solvation = -19524.858067 eV Core-core repulsion = 16487.032250 eV Total energy + Delta-G solvation = -3037.825816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.26171 -40.05287 -38.24886 -36.73993 -35.73709 -34.21556 -32.71469 -30.86225 -30.58615 -27.97602 -25.08838 -24.83748 -23.46495 -22.20497 -21.32304 -19.28476 -18.72143 -17.82502 -17.46811 -17.27447 -16.57533 -16.02440 -15.89487 -15.67206 -15.02509 -15.00672 -14.74819 -14.33303 -14.24905 -13.98532 -13.83627 -13.39643 -13.38716 -13.06058 -12.91763 -12.80481 -12.62146 -12.54315 -12.08252 -12.07116 -11.59175 -11.35772 -11.25764 -11.03518 -10.62190 -9.82291 -8.87528 -8.24189 -6.37950 -0.25380 0.23499 1.37347 1.39115 1.45460 1.49924 1.53042 1.77331 1.98053 2.37125 2.82107 2.88036 3.09025 3.37337 3.49519 3.79934 3.99994 4.18176 4.18438 4.24046 4.32941 4.34286 4.41635 4.66754 4.76551 4.98340 5.01142 5.05816 5.07691 5.26663 5.36801 5.40812 5.42324 5.51368 5.76217 5.83605 6.09387 6.26095 6.43964 6.77465 6.91395 7.32198 8.88365 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.005628 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.547947 B = 4974.306103 C = 6646.682838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.278 3.722 3 C -0.009 4.009 4 C -0.075 4.075 5 C -0.060 4.060 6 C -0.094 4.094 7 C 0.121 3.879 8 C -0.128 4.128 9 N -0.559 5.559 10 C 0.521 3.479 11 O -0.557 6.557 12 C -0.122 4.122 13 C 0.043 3.957 14 C -0.545 4.545 15 H 0.069 0.931 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.262 1.262 22 C 0.090 3.910 23 C -0.074 4.074 24 H 0.168 0.832 25 H 0.183 0.817 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.103 0.897 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.265 0.735 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.403 4.196 25.036 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.037 4.037 3 C -0.013 4.013 4 C -0.096 4.096 5 C -0.078 4.078 6 C -0.098 4.098 7 C 0.026 3.974 8 C -0.152 4.152 9 N -0.282 5.282 10 C 0.313 3.687 11 O -0.435 6.435 12 C -0.161 4.161 13 C 0.006 3.994 14 C -0.583 4.583 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.186 1.186 22 C -0.031 4.031 23 C -0.111 4.111 24 H 0.185 0.815 25 H 0.200 0.800 26 H 0.149 0.851 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.143 0.857 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.184 4.055 24.212 25.579 hybrid contribution -0.479 -0.245 -1.508 1.601 sum 6.705 3.810 22.704 23.978 Atomic orbital electron populations 1.81276 1.13491 1.10387 1.08700 1.25914 0.92855 0.92465 0.92465 1.15608 0.83067 1.07447 0.95152 1.21416 0.94391 0.97415 0.96401 1.20731 0.92585 0.97056 0.97471 1.20673 0.96552 1.00728 0.91856 1.18327 0.90347 1.00513 0.88186 1.21139 0.92028 1.02938 0.99062 1.46153 1.08591 1.67715 1.05740 1.21235 0.92485 0.74360 0.80597 1.90681 1.54688 1.49387 1.48713 1.22007 0.90415 1.03995 0.99678 1.18717 0.95753 0.95089 0.89883 1.21605 0.92662 1.49721 0.94278 0.91267 1.26018 1.02683 0.94530 0.96500 1.70150 1.35454 1.49706 1.01885 0.85412 0.78961 0.78370 0.78098 1.19609 1.20625 1.18611 1.22366 0.80868 1.03443 0.96386 1.21292 0.91345 1.06576 0.91860 0.81479 0.79962 0.85105 0.87903 0.87882 0.99327 0.99323 0.92656 0.90059 0.90064 0.85713 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.11 18.54 19.00 0.35 -13.76 16 2 C 0.28 6.90 15.32 88.33 1.35 8.25 16 3 C -0.01 -0.17 5.72 -21.44 -0.12 -0.29 16 4 C -0.08 -0.82 9.76 22.54 0.22 -0.60 16 5 C -0.06 -0.47 10.02 22.22 0.22 -0.25 16 6 C -0.09 -1.29 6.23 -19.55 -0.12 -1.41 16 7 C 0.12 2.77 6.59 38.23 0.25 3.02 16 8 C -0.13 -3.09 8.57 22.78 0.20 -2.90 16 9 N -0.56 -16.01 3.13 -629.64 -1.97 -17.99 16 10 C 0.52 20.77 7.80 87.66 0.68 21.46 16 11 O -0.56 -27.00 16.27 -3.04 -0.05 -27.05 16 12 C -0.12 -5.13 3.46 29.85 0.10 -5.02 16 13 C 0.04 2.43 4.26 29.85 0.13 2.56 16 14 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 15 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 16 C 0.00 0.05 5.46 84.65 0.46 0.52 16 17 N -0.93 -59.27 13.29 21.45 0.28 -58.98 16 18 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 C 0.09 1.80 7.06 86.62 0.61 2.41 16 23 C -0.07 -0.71 6.93 30.27 0.21 -0.50 16 24 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 25 H 0.18 -0.10 8.06 -2.91 -0.02 -0.12 16 26 H 0.13 3.76 4.19 -2.91 -0.01 3.75 16 27 H 0.10 3.97 6.90 -2.39 -0.02 3.95 16 28 H 0.10 3.97 6.91 -2.39 -0.02 3.96 16 29 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 30 H -0.01 -0.73 8.10 -2.38 -0.02 -0.75 16 31 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -81.58 307.31 6.19 -75.39 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: 1.12 Total: -0.97 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 4.43 Total: -4.19 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -1.33 Total: -90.73 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.05 Total: -27.05 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -81.58 6.19 -75.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291894694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.606 kcal (2) G-P(sol) polarization free energy of solvation -81.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds