Wall clock time and date at job start Mon Mar 30 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99857 * 2 1 4 4 H 1.07998 * 120.00482 * 320.77439 * 3 2 1 5 5 C 1.38816 * 119.99874 * 140.76579 * 3 2 1 6 6 N 1.31619 * 120.00097 * 157.85198 * 5 3 2 7 7 Si 1.86799 * 119.99949 * 337.85644 * 5 3 2 8 8 H 1.48505 * 109.47311 * 95.63918 * 7 5 3 9 9 H 1.48500 * 109.47122 * 215.63784 * 7 5 3 10 10 H 1.48500 * 109.47076 * 335.63942 * 7 5 3 11 11 C 1.46493 * 120.00023 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47437 * 89.99814 * 11 2 1 13 13 O 1.21296 * 119.99705 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00372 * 179.97438 * 12 11 2 15 15 C 1.40039 * 120.00169 * 174.89557 * 14 12 11 16 16 C 1.38790 * 120.06081 * 27.97913 * 15 14 12 17 17 C 1.38348 * 119.92729 * 179.79105 * 16 15 14 18 18 F 1.35101 * 119.97146 * 180.22875 * 17 16 15 19 19 C 1.38492 * 120.05951 * 0.48563 * 17 16 15 20 20 C 1.38259 * 120.12932 * 359.74187 * 19 17 16 21 21 C 1.38291 * 120.07072 * 0.02562 * 20 19 17 22 22 F 1.35107 * 120.03370 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.46987 * 275.25972 * 1 2 3 24 24 H 1.09008 * 109.47293 * 35.25824 * 1 2 3 25 25 H 1.08995 * 109.47455 * 155.25846 * 1 2 3 26 26 H 0.97002 * 119.99876 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.46947 * 329.99668 * 11 2 1 28 28 H 1.08997 * 109.47247 * 209.99624 * 11 2 1 29 29 H 0.97005 * 119.99390 * 354.90028 * 14 12 11 30 30 H 1.07999 * 120.03714 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.93589 * 179.72701 * 19 17 16 32 32 H 1.08001 * 119.96410 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7922 2.0159 -0.5914 5 6 3.3031 1.3214 0.7604 6 7 4.1884 2.2460 0.4542 7 14 3.5989 0.1915 2.2181 8 1 4.4523 -0.9482 1.7960 9 1 4.2811 0.9468 3.2995 10 1 2.2984 -0.3226 2.7178 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7032 -1.4216 13 8 2.0541 -1.0204 -2.3432 14 7 3.1116 -2.8503 -1.6684 15 6 3.2520 -3.3088 -2.9841 16 6 3.2619 -2.4055 -4.0378 17 6 3.4051 -2.8611 -5.3362 18 9 3.4196 -1.9822 -6.3621 19 6 3.5284 -4.2178 -5.5857 20 6 3.5141 -5.1201 -4.5383 21 6 3.3760 -4.6703 -3.2379 22 9 3.3616 -5.5528 -2.2150 23 1 -0.3633 0.0942 1.0234 24 1 -0.3634 0.8392 -0.5933 25 1 -0.3634 -0.9333 -0.4301 26 1 4.9945 2.3404 0.9853 27 1 1.6084 -2.0285 0.5130 28 1 3.1499 -1.1386 0.5132 29 1 3.4915 -3.3584 -0.9345 30 1 3.1610 -1.3478 -3.8440 31 1 3.6356 -4.5716 -6.6005 32 1 3.6108 -6.1775 -4.7359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299620403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:23 Heat of formation + Delta-G solvation = -59.903492 kcal Electronic energy + Delta-G solvation = -20475.626380 eV Core-core repulsion = 16880.833996 eV Total energy + Delta-G solvation = -3594.792384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.97598 -48.86367 -40.14947 -38.13044 -35.56301 -34.42482 -31.73631 -30.61806 -29.69983 -27.65639 -26.05514 -23.67800 -22.59413 -21.47065 -20.29641 -18.52318 -17.56940 -17.37478 -16.83283 -16.31070 -15.94917 -15.68082 -15.46179 -15.31928 -14.50898 -14.40794 -13.87540 -13.79377 -13.58540 -13.17613 -12.92043 -12.67932 -12.53970 -12.11838 -11.95126 -11.57080 -11.43478 -10.90279 -10.61631 -10.44492 -10.30208 -9.75729 -9.32344 -8.78542 -8.63860 -8.11301 -6.96935 -6.10966 -3.54893 0.88560 1.03364 2.98010 3.08173 3.14283 3.34842 3.38257 3.47994 4.07214 4.20160 4.36828 4.54254 4.85013 4.87629 5.09349 5.17430 5.31462 5.53130 5.75199 5.81595 5.87524 5.97796 5.99738 6.18625 6.22856 6.41567 6.58119 6.68622 6.91487 7.51973 7.90731 8.30467 8.52988 8.83814 9.55444 9.93459 11.04093 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.005712 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.709092 B = 4900.852140 C = 5314.689476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.583 5.583 3 C -0.267 4.267 4 H 0.081 0.919 5 C 0.035 3.965 6 N -0.890 5.890 7 Si 0.869 3.131 8 H -0.285 1.285 9 H -0.294 1.294 10 H -0.264 1.264 11 C 0.120 3.880 12 C 0.485 3.515 13 O -0.491 6.491 14 N -0.681 5.681 15 C 0.164 3.836 16 C -0.148 4.148 17 C 0.114 3.886 18 F -0.133 7.133 19 C -0.158 4.158 20 C -0.105 4.105 21 C 0.044 3.956 22 F -0.137 7.137 23 H 0.017 0.983 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.265 0.735 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.412 0.588 30 H 0.176 0.824 31 H 0.142 0.858 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 -16.117 -6.541 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.303 5.303 3 C -0.396 4.396 4 H 0.099 0.901 5 C -0.166 4.166 6 N -0.530 5.530 7 Si 0.698 3.302 8 H -0.213 1.213 9 H -0.221 1.221 10 H -0.189 1.189 11 C -0.011 4.011 12 C 0.271 3.729 13 O -0.363 6.363 14 N -0.328 5.328 15 C 0.065 3.935 16 C -0.170 4.170 17 C 0.094 3.906 18 F -0.112 7.112 19 C -0.178 4.178 20 C -0.124 4.124 21 C 0.021 3.979 22 F -0.116 7.116 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.248 0.752 30 H 0.193 0.807 31 H 0.160 0.840 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.227 -15.365 -7.035 16.943 hybrid contribution 0.654 -0.908 1.071 1.549 sum -0.573 -16.273 -5.964 17.341 Atomic orbital electron populations 1.21110 0.83222 0.99228 0.98090 1.43720 1.01259 1.00870 1.84480 1.18806 1.07448 0.90355 1.22991 0.90104 1.25542 0.96662 0.96659 0.97758 1.69889 1.08820 1.35514 1.38753 0.87033 0.78183 0.80168 0.84783 1.21292 1.22139 1.18866 1.21508 0.99172 0.90546 0.89907 1.23712 0.75428 0.78161 0.95561 1.90563 1.48578 1.51264 1.45849 1.44269 1.56356 1.26691 1.05483 1.17683 0.98915 0.90119 0.86745 1.21614 1.02432 1.03426 0.89485 1.17538 1.01789 0.86929 0.84376 1.91519 1.93748 1.68549 1.57354 1.20873 1.05642 0.90933 1.00375 1.20703 1.01121 1.00824 0.89739 1.17418 1.10223 0.85047 0.85188 1.91474 1.94543 1.67573 1.57970 0.96450 0.93710 0.94992 0.92476 0.90431 0.89630 0.75215 0.80722 0.84014 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.58 10.69 59.85 0.64 3.22 16 2 N -0.58 -13.81 1.93 -182.51 -0.35 -14.16 16 3 C -0.27 -7.47 9.92 -15.06 -0.15 -7.62 16 4 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 5 C 0.04 0.99 5.30 -17.43 -0.09 0.90 16 6 N -0.89 -26.72 13.97 55.49 0.78 -25.94 16 7 Si 0.87 20.62 25.11 -169.99 -4.27 16.35 16 8 H -0.28 -6.32 6.69 56.52 0.38 -5.94 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 11 C 0.12 2.44 4.96 -5.20 -0.03 2.42 16 12 C 0.48 9.65 7.78 -10.98 -0.09 9.57 16 13 O -0.49 -11.40 13.45 5.54 0.07 -11.33 16 14 N -0.68 -10.94 5.28 -9.81 -0.05 -10.99 16 15 C 0.16 2.54 6.43 -83.60 -0.54 2.00 16 16 C -0.15 -2.47 8.75 -39.34 -0.34 -2.81 16 17 C 0.11 1.62 7.30 -39.45 -0.29 1.34 16 18 F -0.13 -2.00 17.27 2.25 0.04 -1.96 16 19 C -0.16 -1.75 10.02 -39.48 -0.40 -2.15 16 20 C -0.10 -1.11 10.02 -39.55 -0.40 -1.50 16 21 C 0.04 0.56 7.31 -39.26 -0.29 0.28 16 22 F -0.14 -1.72 16.86 2.25 0.04 -1.68 16 23 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.04 0.91 8.08 -51.92 -0.42 0.49 16 25 H 0.03 0.56 8.03 -51.93 -0.42 0.14 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 28 H 0.09 1.83 3.49 -51.93 -0.18 1.65 16 29 H 0.41 5.40 8.52 -40.82 -0.35 5.05 16 30 H 0.18 3.46 5.66 -52.49 -0.30 3.16 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 285.73 15.07 4.31 4.31 Total: -1.00 -31.86 285.73 -4.33 -36.19 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -2.93 Total: 3.59 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.96 Total: 5.63 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.37 Total: -51.09 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.08 Total: -3.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.27 Total: 16.35 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.86 -4.33 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299620403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.714 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds