Wall clock time and date at job start Mon Mar 30 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 119.99857 * 2 1 4 4 H 1.07998 * 120.00482 * 320.77439 * 3 2 1 5 5 C 1.38816 * 119.99874 * 140.76579 * 3 2 1 6 6 N 1.31619 * 120.00097 * 157.85198 * 5 3 2 7 7 Si 1.86799 * 119.99949 * 337.85644 * 5 3 2 8 8 H 1.48505 * 109.47311 * 95.63918 * 7 5 3 9 9 H 1.48500 * 109.47122 * 215.63784 * 7 5 3 10 10 H 1.48500 * 109.47076 * 335.63942 * 7 5 3 11 11 C 1.46493 * 120.00023 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47437 * 89.99814 * 11 2 1 13 13 O 1.21296 * 119.99705 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00372 * 179.97438 * 12 11 2 15 15 C 1.40039 * 120.00169 * 174.89557 * 14 12 11 16 16 C 1.38790 * 120.06081 * 27.97913 * 15 14 12 17 17 C 1.38348 * 119.92729 * 179.79105 * 16 15 14 18 18 F 1.35101 * 119.97146 * 180.22875 * 17 16 15 19 19 C 1.38492 * 120.05951 * 0.48563 * 17 16 15 20 20 C 1.38259 * 120.12932 * 359.74187 * 19 17 16 21 21 C 1.38291 * 120.07072 * 0.02562 * 20 19 17 22 22 F 1.35107 * 120.03370 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.46987 * 275.25972 * 1 2 3 24 24 H 1.09008 * 109.47293 * 35.25824 * 1 2 3 25 25 H 1.08995 * 109.47455 * 155.25846 * 1 2 3 26 26 H 0.97002 * 119.99876 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.46947 * 329.99668 * 11 2 1 28 28 H 1.08997 * 109.47247 * 209.99624 * 11 2 1 29 29 H 0.97005 * 119.99390 * 354.90028 * 14 12 11 30 30 H 1.07999 * 120.03714 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.93589 * 179.72701 * 19 17 16 32 32 H 1.08001 * 119.96410 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7922 2.0159 -0.5914 5 6 3.3031 1.3214 0.7604 6 7 4.1884 2.2460 0.4542 7 14 3.5989 0.1915 2.2181 8 1 4.4523 -0.9482 1.7960 9 1 4.2811 0.9468 3.2995 10 1 2.2984 -0.3226 2.7178 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7032 -1.4216 13 8 2.0541 -1.0204 -2.3432 14 7 3.1116 -2.8503 -1.6684 15 6 3.2520 -3.3088 -2.9841 16 6 3.2619 -2.4055 -4.0378 17 6 3.4051 -2.8611 -5.3362 18 9 3.4196 -1.9822 -6.3621 19 6 3.5284 -4.2178 -5.5857 20 6 3.5141 -5.1201 -4.5383 21 6 3.3760 -4.6703 -3.2379 22 9 3.3616 -5.5528 -2.2150 23 1 -0.3633 0.0942 1.0234 24 1 -0.3634 0.8392 -0.5933 25 1 -0.3634 -0.9333 -0.4301 26 1 4.9945 2.3404 0.9853 27 1 1.6084 -2.0285 0.5130 28 1 3.1499 -1.1386 0.5132 29 1 3.4915 -3.3584 -0.9345 30 1 3.1610 -1.3478 -3.8440 31 1 3.6356 -4.5716 -6.6005 32 1 3.6108 -6.1775 -4.7359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299620403.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:23 Heat of formation + Delta-G solvation = -81.911487 kcal Electronic energy + Delta-G solvation = -20476.580719 eV Core-core repulsion = 16880.833996 eV Total energy + Delta-G solvation = -3595.746722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.00337 -49.97908 -41.52761 -39.38557 -37.30076 -35.83433 -33.82206 -31.78278 -30.88362 -29.12043 -27.98850 -24.89376 -23.81218 -23.11071 -21.80581 -19.85577 -18.82700 -18.72191 -18.35261 -17.61873 -17.38933 -17.04162 -16.79266 -16.41558 -16.11447 -15.58027 -15.41564 -15.27189 -14.98724 -14.69671 -14.51229 -14.10006 -13.78189 -13.64514 -13.27098 -13.13215 -12.70608 -12.60650 -12.41157 -12.13752 -11.72712 -11.63227 -10.93444 -10.64731 -9.90014 -9.25960 -8.87575 -8.25330 -5.70243 -0.18531 -0.02389 1.25645 1.41679 1.51574 1.60561 1.82319 2.35686 2.37310 2.95100 3.02742 3.13402 3.32020 3.56628 3.83664 3.95613 4.09108 4.27659 4.33123 4.39104 4.61220 4.78505 4.90510 4.99259 5.00354 5.06845 5.07325 5.23965 5.78075 5.83553 6.12142 6.26244 6.83218 7.10827 7.49402 7.89497 8.94441 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022454 B = 0.005712 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.709092 B = 4900.852140 C = 5314.689476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.599 5.599 3 C -0.269 4.269 4 H 0.024 0.976 5 C -0.025 4.025 6 N -0.947 5.947 7 Si 0.946 3.054 8 H -0.256 1.256 9 H -0.302 1.302 10 H -0.242 1.242 11 C 0.115 3.885 12 C 0.485 3.515 13 O -0.537 6.537 14 N -0.668 5.668 15 C 0.139 3.861 16 C -0.175 4.175 17 C 0.097 3.903 18 F -0.144 7.144 19 C -0.133 4.133 20 C -0.085 4.085 21 C 0.054 3.946 22 F -0.130 7.130 23 H 0.036 0.964 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.266 0.734 27 H 0.127 0.873 28 H 0.079 0.921 29 H 0.427 0.573 30 H 0.132 0.868 31 H 0.182 0.818 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 -20.926 -6.183 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.321 5.321 3 C -0.399 4.399 4 H 0.042 0.958 5 C -0.222 4.222 6 N -0.589 5.589 7 Si 0.771 3.229 8 H -0.182 1.182 9 H -0.230 1.230 10 H -0.165 1.165 11 C -0.015 4.015 12 C 0.272 3.728 13 O -0.412 6.412 14 N -0.316 5.316 15 C 0.041 3.959 16 C -0.197 4.197 17 C 0.077 3.923 18 F -0.122 7.122 19 C -0.152 4.152 20 C -0.103 4.103 21 C 0.032 3.968 22 F -0.109 7.109 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.144 0.856 28 H 0.096 0.904 29 H 0.266 0.734 30 H 0.150 0.850 31 H 0.199 0.801 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.135 -20.254 -6.685 21.358 hybrid contribution 0.609 0.530 0.774 1.118 sum -0.527 -19.724 -5.911 20.597 Atomic orbital electron populations 1.21191 0.81431 0.99966 0.99082 1.43783 1.02548 1.00607 1.85116 1.18550 1.07918 0.91217 1.22244 0.95805 1.26318 0.96044 0.99232 1.00596 1.70053 1.09772 1.38815 1.40295 0.85804 0.79353 0.78456 0.79256 1.18200 1.23042 1.16483 1.21635 0.99340 0.90158 0.90376 1.23387 0.75566 0.78847 0.94963 1.90581 1.50709 1.52950 1.46920 1.43818 1.55500 1.25642 1.06629 1.17748 1.01032 0.91321 0.85757 1.21327 1.05028 1.01819 0.91493 1.17773 1.02873 0.88385 0.83236 1.91490 1.93953 1.69290 1.57494 1.21291 1.02484 0.88891 1.02550 1.21216 0.98210 1.02884 0.88019 1.17477 1.09264 0.83764 0.86339 1.91499 1.94403 1.67014 1.57995 0.94552 0.95486 0.92306 0.92485 0.85563 0.90394 0.73422 0.85026 0.80115 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.05 10.69 127.77 1.37 6.42 16 2 N -0.60 -28.50 1.93 -731.32 -1.41 -29.91 16 3 C -0.27 -15.79 9.92 84.03 0.83 -14.96 16 4 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 5 C -0.03 -1.46 5.30 84.86 0.45 -1.01 16 6 N -0.95 -59.62 13.97 21.65 0.30 -59.32 16 7 Si 0.95 42.39 25.11 68.60 1.72 44.12 16 8 H -0.26 -10.19 6.69 99.48 0.67 -9.52 16 9 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.24 -9.89 7.11 99.48 0.71 -9.19 16 11 C 0.11 4.48 4.96 85.64 0.42 4.91 16 12 C 0.49 19.32 7.78 87.66 0.68 20.00 16 13 O -0.54 -26.12 13.45 -3.08 -0.04 -26.16 16 14 N -0.67 -20.68 5.28 -303.33 -1.60 -22.29 16 15 C 0.14 4.15 6.43 38.16 0.25 4.40 16 16 C -0.18 -5.98 8.75 22.43 0.20 -5.78 16 17 C 0.10 2.70 7.30 22.36 0.16 2.86 16 18 F -0.14 -4.33 17.27 44.97 0.78 -3.56 16 19 C -0.13 -2.39 10.02 22.34 0.22 -2.17 16 20 C -0.08 -1.35 10.02 22.29 0.22 -1.13 16 21 C 0.05 1.20 7.31 22.48 0.16 1.37 16 22 F -0.13 -2.73 16.86 44.97 0.76 -1.97 16 23 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.03 1.13 8.08 -2.38 -0.02 1.11 16 25 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.13 3.67 8.07 -2.39 -0.02 3.65 16 28 H 0.08 3.16 3.49 -2.39 -0.01 3.16 16 29 H 0.43 10.16 8.52 -92.70 -0.79 9.37 16 30 H 0.13 5.69 5.66 -2.91 -0.02 5.68 16 31 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.19 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -75.90 285.73 5.82 -70.08 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.35 Total: 14.10 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 4.97 Total: 14.91 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -2.71 Total: -111.52 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.04 Total: -26.16 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 1.53 Total: -5.53 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.72 Total: 44.12 kcal Total: -75.90 5.82 -70.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299620403.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.828 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds