Wall clock time and date at job start Mon Mar 30 2020 01:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43189 * 179.97438 * 2 1 4 4 C 1.39787 * 120.24853 * 67.97128 * 3 2 1 5 5 C 1.37403 * 120.07338 * 179.74356 * 4 3 2 6 6 C 1.39913 * 120.49147 * 0.27647 * 5 4 3 7 7 C 1.38829 * 119.26459 * 359.97438 * 6 5 4 8 8 C 1.37771 * 120.63903 * 359.97438 * 7 6 5 9 9 C 1.51255 * 108.51202 * 179.97438 * 7 6 5 10 10 C 1.53735 * 104.52468 * 359.97438 * 9 7 6 11 11 N 1.39496 * 129.13630 * 179.97438 * 6 5 4 12 12 C 1.34774 * 124.92860 * 359.97175 * 11 6 5 13 13 O 1.21292 * 119.99815 * 180.02562 * 12 11 6 14 14 C 1.50693 * 120.00109 * 0.02562 * 12 11 6 15 15 C 1.53005 * 109.47068 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46977 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00031 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00037 * 179.97438 * 16 15 14 19 19 N 1.31524 * 119.99728 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00235 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46987 * 60.00076 * 20 18 16 22 22 H 1.48497 * 109.47362 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47119 * 300.00231 * 20 18 16 24 24 H 1.08002 * 119.96469 * 0.02715 * 4 3 2 25 25 H 1.08003 * 119.75127 * 180.25983 * 5 4 3 26 26 H 1.08000 * 119.98712 * 180.02562 * 8 7 6 27 27 H 1.08998 * 110.41938 * 241.23664 * 9 7 6 28 28 H 1.08990 * 110.52816 * 118.80962 * 9 7 6 29 29 H 1.09001 * 110.29569 * 241.06334 * 10 9 7 30 30 H 1.09001 * 110.29065 * 118.94112 * 10 9 7 31 31 H 1.09000 * 109.47718 * 300.00448 * 14 12 11 32 32 H 1.09004 * 109.46879 * 60.00637 * 14 12 11 33 33 H 1.09004 * 109.46947 * 299.99838 * 15 14 12 34 34 H 1.08996 * 109.47163 * 60.00125 * 15 14 12 35 35 H 0.96996 * 119.99655 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2724 -0.4520 -1.1194 5 6 4.6464 -0.4448 -1.1175 6 6 5.3524 0.0081 0.0023 7 6 4.6493 0.4520 1.1140 8 6 3.2717 0.4494 1.1205 9 6 5.6429 0.8803 2.1710 10 6 7.0183 0.6282 1.5322 11 7 6.7309 0.0930 0.1989 12 6 7.6630 -0.2671 -0.7055 13 8 8.8411 -0.1557 -0.4394 14 6 7.2415 -0.8082 -2.0473 15 6 8.4838 -1.1380 -2.8773 16 6 8.0623 -1.6785 -4.2194 17 1 7.0133 -1.7774 -4.4565 18 6 9.0159 -2.0469 -5.1447 19 7 10.2934 -1.9269 -4.8557 20 14 8.4935 -2.7176 -6.8079 21 1 7.6786 -1.6995 -7.5184 22 1 9.6992 -3.0375 -7.6136 23 1 7.6872 -3.9495 -6.6139 24 1 2.7360 -0.8034 -1.9885 25 1 5.1853 -0.7918 -1.9868 26 1 2.7353 0.7974 1.9910 27 1 5.5252 0.2761 3.0706 28 1 5.5199 1.9376 2.4051 29 1 7.5803 -0.0982 2.1191 30 1 7.5746 1.5621 1.4518 31 1 6.6496 -1.7124 -1.9049 32 1 6.6435 -0.0609 -2.5688 33 1 9.0760 -0.2340 -3.0198 34 1 9.0815 -1.8854 -2.3556 35 1 10.9642 -2.1856 -5.5068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334847542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:58 Heat of formation + Delta-G solvation = 23.107041 kcal Electronic energy + Delta-G solvation = -19340.921062 eV Core-core repulsion = 16303.957815 eV Total energy + Delta-G solvation = -3036.963248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30642 -38.87430 -37.19097 -35.77368 -33.84112 -32.97633 -30.98194 -30.28154 -29.42744 -26.14588 -24.23607 -23.50434 -22.51631 -20.79934 -19.77533 -18.63836 -17.31347 -16.44657 -16.43559 -16.01785 -14.91848 -14.64866 -14.60389 -14.35379 -14.06974 -14.05336 -13.62920 -13.11648 -12.86180 -12.80363 -12.53855 -12.52640 -12.21961 -12.11028 -11.89902 -11.43346 -10.97920 -10.94329 -10.62154 -10.32985 -10.11402 -9.83485 -9.46752 -9.19952 -9.14717 -8.40185 -7.92991 -6.04003 -4.09370 0.57219 1.08813 2.53095 2.55403 2.74970 3.06098 3.30465 3.35882 3.36936 3.69577 3.71794 4.24782 4.25267 4.41510 4.62453 4.76559 4.86392 4.96251 5.24169 5.27926 5.31478 5.47827 5.50260 5.64998 5.70358 5.80143 5.94330 5.95747 6.02511 6.10023 6.24451 6.56040 6.68318 7.36010 7.41949 7.62718 7.70288 7.94999 8.16431 8.33687 8.97582 9.55050 11.06882 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.004726 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.830192 B = 5923.636126 C = 7426.296007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.266 3.734 3 C -0.072 4.072 4 C -0.029 4.029 5 C -0.167 4.167 6 C 0.198 3.802 7 C -0.151 4.151 8 C -0.021 4.021 9 C -0.082 4.082 10 C 0.101 3.899 11 N -0.561 5.561 12 C 0.520 3.480 13 O -0.500 6.500 14 C -0.135 4.135 15 C 0.035 3.965 16 C -0.530 4.530 17 H 0.057 0.943 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.140 0.860 25 H 0.160 0.840 26 H 0.133 0.867 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.806 5.328 13.395 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.049 4.049 3 C -0.077 4.077 4 C -0.050 4.050 5 C -0.188 4.188 6 C 0.098 3.902 7 C -0.154 4.154 8 C -0.042 4.042 9 C -0.120 4.120 10 C -0.021 4.021 11 N -0.283 5.283 12 C 0.312 3.688 13 O -0.372 6.372 14 C -0.175 4.175 15 C -0.002 4.002 16 C -0.569 4.569 17 H 0.075 0.925 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.158 0.842 25 H 0.177 0.823 26 H 0.151 0.849 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.460 5.340 13.416 19.073 hybrid contribution 0.267 -0.356 -0.880 0.986 sum -12.193 4.984 12.536 18.184 Atomic orbital electron populations 1.81255 1.12115 1.09691 1.07792 1.25606 0.92488 0.93231 0.93552 1.15727 0.84210 1.10531 0.97223 1.20926 0.93100 0.94492 0.96515 1.21352 0.93797 1.04616 0.98998 1.18656 0.83564 0.93448 0.94556 1.19843 0.93239 1.06158 0.96206 1.20223 0.91683 0.95658 0.96674 1.21115 0.90800 1.02900 0.97143 1.22068 0.97373 1.00301 0.82362 1.46453 1.04223 1.61243 1.16410 1.21810 0.84862 0.75951 0.86136 1.90722 1.16957 1.51032 1.78513 1.22306 1.04186 1.00844 0.90121 1.18968 0.90195 0.97928 0.93114 1.21117 0.92864 1.43549 0.99321 0.92453 1.25012 0.94893 0.95650 0.98645 1.69981 0.99848 1.47477 1.35414 0.86636 0.77970 0.79477 0.83781 1.20155 1.21259 1.20160 0.84225 0.82299 0.84921 0.88968 0.88947 0.89808 0.89818 0.89064 0.89062 0.95644 0.95643 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.62 18.54 41.84 0.78 -4.84 16 2 C 0.27 2.85 15.34 -22.47 -0.34 2.50 16 3 C -0.07 -0.66 5.74 -106.84 -0.61 -1.28 16 4 C -0.03 -0.27 9.73 -39.31 -0.38 -0.66 16 5 C -0.17 -1.85 8.84 -39.26 -0.35 -2.20 16 6 C 0.20 2.33 6.60 -83.53 -0.55 1.77 16 7 C -0.15 -1.40 6.21 -104.30 -0.65 -2.05 16 8 C -0.02 -0.17 9.75 -39.20 -0.38 -0.56 16 9 C -0.08 -0.61 6.94 -27.23 -0.19 -0.80 16 10 C 0.10 1.06 7.05 -3.65 -0.03 1.04 16 11 N -0.56 -7.79 3.12 -112.86 -0.35 -8.14 16 12 C 0.52 9.44 7.80 -10.99 -0.09 9.35 16 13 O -0.50 -10.97 16.27 5.55 0.09 -10.88 16 14 C -0.14 -2.53 3.45 -27.88 -0.10 -2.63 16 15 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 16 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.68 5.46 -17.81 -0.10 1.58 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 25 H 0.16 1.88 4.16 -52.48 -0.22 1.66 16 26 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.54 6.89 -51.93 -0.36 1.18 16 32 H 0.09 1.54 6.90 -51.93 -0.36 1.18 16 33 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -32.97 307.24 -7.19 -40.16 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -3.85 Total: -3.39 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -4.20 Total: -7.67 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 1.16 Total: -38.73 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.97 -7.19 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334847542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.263 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds