Wall clock time and date at job start Mon Mar 30 2020 01:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39663 * 120.27871 * 276.70505 * 3 2 1 5 5 C 1.37612 * 119.61059 * 180.13073 * 4 3 2 6 6 C 1.39083 * 120.76661 * 359.96580 * 5 4 3 7 7 C 1.37842 * 119.91557 * 359.85036 * 6 5 4 8 8 C 1.38644 * 119.82229 * 0.25950 * 7 6 5 9 9 C 1.50665 * 122.56087 * 180.31289 * 7 6 5 10 10 C 1.52723 * 110.60162 * 342.47090 * 9 7 6 11 11 C 1.53324 * 108.36329 * 51.08131 * 10 9 7 12 12 C 1.50686 * 117.59393 * 179.79440 * 6 5 4 13 13 H 1.09002 * 109.22066 * 282.74499 * 12 6 5 14 14 N 1.46504 * 109.24613 * 42.18283 * 12 6 5 15 15 C 1.34777 * 119.99854 * 276.11317 * 14 12 6 16 16 O 1.21693 * 120.00018 * 0.02562 * 15 14 12 17 17 C 1.46377 * 120.00307 * 180.27510 * 15 14 12 18 18 H 1.08001 * 119.99387 * 359.73219 * 17 15 14 19 19 C 1.40043 * 120.00458 * 179.72666 * 17 15 14 20 20 N 1.30674 * 120.00000 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47199 * 0.02562 * 21 19 17 23 23 H 1.48513 * 109.47252 * 120.00033 * 21 19 17 24 24 H 1.48503 * 109.47413 * 239.99785 * 21 19 17 25 25 H 1.07999 * 120.19178 * 0.14669 * 4 3 2 26 26 H 1.08000 * 119.61802 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.78441 * 179.84098 * 8 7 6 28 28 H 1.08994 * 109.25163 * 222.17729 * 9 7 6 29 29 H 1.09001 * 109.24712 * 102.75542 * 9 7 6 30 30 H 1.09003 * 109.68363 * 291.36741 * 10 9 7 31 31 H 1.09000 * 109.68688 * 170.80401 * 10 9 7 32 32 H 1.08994 * 109.69034 * 170.29001 * 11 10 9 33 33 H 1.09000 * 109.71448 * 49.74196 * 11 10 9 34 34 H 0.97000 * 120.00410 * 96.12043 * 14 12 6 35 35 H 0.96998 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2722 -0.1399 1.1979 5 6 4.6482 -0.1347 1.1822 6 6 5.3457 0.0082 -0.0126 7 6 4.6567 0.1435 -1.1988 8 6 3.2703 0.1420 -1.1949 9 6 5.3512 0.2949 -2.5272 10 6 6.8087 0.7055 -2.3279 11 6 7.4499 -0.2609 -1.3250 12 6 6.8511 0.0088 0.0537 13 1 7.1941 0.9799 0.4108 14 7 7.2939 -1.0320 0.9847 15 6 7.3404 -0.7776 2.3074 16 8 7.0141 0.3166 2.7284 17 6 7.7886 -1.8156 3.2372 18 1 8.0779 -2.7867 2.8635 19 6 7.8424 -1.5493 4.6110 20 7 7.4920 -0.3744 5.0631 21 14 8.4150 -2.8738 5.7973 22 1 8.7531 -4.1050 5.0390 23 1 9.6168 -2.3976 6.5284 24 1 7.3311 -3.1714 6.7678 25 1 2.7400 -0.2522 2.1308 26 1 5.1930 -0.2429 2.1085 27 1 2.7311 0.2506 -2.1244 28 1 4.8402 1.0573 -3.1150 29 1 5.3152 -0.6543 -3.0618 30 1 6.8536 1.7224 -1.9380 31 1 7.3384 0.6526 -3.2790 32 1 8.5272 -0.0981 -1.2955 33 1 7.2420 -1.2892 -1.6208 34 1 7.5537 -1.9043 0.6492 35 1 7.5296 -0.1900 6.0146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334916464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:55 Heat of formation + Delta-G solvation = -16.744671 kcal Electronic energy + Delta-G solvation = -19908.232505 eV Core-core repulsion = 16869.541158 eV Total energy + Delta-G solvation = -3038.691347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37021 -39.25129 -37.99208 -36.68586 -34.98267 -34.27335 -32.16804 -31.49270 -29.60709 -27.90014 -25.11644 -24.13521 -23.12235 -21.53720 -21.13016 -19.26783 -18.81994 -17.42546 -17.19544 -16.80833 -16.23104 -15.86669 -15.65576 -15.15195 -14.85437 -14.63190 -14.48340 -14.20876 -14.03607 -13.72668 -13.57722 -13.36006 -13.24036 -12.95509 -12.76702 -12.61606 -12.49594 -12.21026 -11.98967 -11.78716 -11.40780 -11.30577 -10.90572 -9.84336 -9.74035 -9.53079 -9.39535 -8.25642 -6.80632 -0.21066 0.42508 1.40310 1.42046 1.54089 1.57979 1.87956 2.26156 2.51029 2.80977 2.85000 3.23461 3.60568 3.77802 3.91677 3.99378 4.15482 4.16706 4.31759 4.37201 4.60575 4.70868 4.77476 4.91855 4.99728 5.06693 5.14407 5.24003 5.29524 5.35826 5.41440 5.50595 5.53153 5.73695 5.91949 6.00009 6.29356 6.34957 6.37228 6.91995 7.60782 8.53990 8.71519 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.005793 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.712719 B = 4832.395112 C = 6050.291148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.286 3.714 3 C -0.041 4.041 4 C -0.089 4.089 5 C -0.127 4.127 6 C -0.061 4.061 7 C -0.073 4.073 8 C -0.065 4.065 9 C -0.075 4.075 10 C -0.113 4.113 11 C -0.116 4.116 12 C 0.185 3.815 13 H 0.054 0.946 14 N -0.748 5.748 15 C 0.546 3.454 16 O -0.617 6.617 17 C -0.573 4.573 18 H 0.084 0.916 19 C 0.035 3.965 20 N -0.818 5.818 21 Si 0.988 3.012 22 H -0.248 1.248 23 H -0.270 1.270 24 H -0.272 1.272 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.165 0.835 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.395 0.605 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.988 -1.815 -15.810 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.028 4.028 3 C -0.044 4.044 4 C -0.109 4.109 5 C -0.146 4.146 6 C -0.064 4.064 7 C -0.073 4.073 8 C -0.085 4.085 9 C -0.112 4.112 10 C -0.151 4.151 11 C -0.154 4.154 12 C 0.080 3.920 13 H 0.072 0.928 14 N -0.401 5.401 15 C 0.350 3.650 16 O -0.505 6.505 17 C -0.610 4.610 18 H 0.102 0.898 19 C -0.181 4.181 20 N -0.448 5.448 21 Si 0.808 3.192 22 H -0.171 1.171 23 H -0.195 1.195 24 H -0.198 1.198 25 H 0.141 0.859 26 H 0.132 0.868 27 H 0.183 0.817 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.999 -0.905 -15.374 15.690 hybrid contribution 0.667 -0.669 1.467 1.745 sum -2.332 -1.574 -13.907 14.189 Atomic orbital electron populations 1.81216 1.12828 1.10906 1.08833 1.25748 0.92523 0.92215 0.92363 1.15879 0.83497 1.09554 0.95499 1.21072 0.93840 0.98809 0.97214 1.21742 0.94222 0.98557 1.00036 1.20622 0.96888 0.96311 0.92552 1.19896 0.92876 0.99236 0.95321 1.21402 0.93399 0.96875 0.96815 1.20612 0.94941 1.04147 0.91456 1.21546 0.95341 0.98452 0.99738 1.21791 1.00370 1.01619 0.91572 1.19590 0.88796 0.92439 0.91203 0.92802 1.45954 1.72424 1.15661 1.06094 1.18398 0.77219 0.87975 0.81380 1.90567 1.54897 1.27048 1.77939 1.21456 1.47660 0.99860 0.92005 0.89825 1.26799 0.92598 0.97886 1.00775 1.70169 1.36314 1.23230 1.15052 0.85105 0.78206 0.78402 0.77449 1.17144 1.19537 1.19758 0.85910 0.86767 0.81737 0.87943 0.88095 0.92288 0.87908 0.90747 0.89779 0.77113 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.62 18.54 19.00 0.35 -14.27 16 2 C 0.29 8.15 15.34 88.33 1.36 9.50 16 3 C -0.04 -1.13 5.72 -21.43 -0.12 -1.25 16 4 C -0.09 -3.01 9.76 22.47 0.22 -2.79 16 5 C -0.13 -5.07 8.97 22.32 0.20 -4.87 16 6 C -0.06 -2.03 5.56 -19.76 -0.11 -2.14 16 7 C -0.07 -1.72 5.73 -19.87 -0.11 -1.84 16 8 C -0.06 -1.43 9.31 22.63 0.21 -1.22 16 9 C -0.08 -1.11 5.66 29.74 0.17 -0.94 16 10 C -0.11 -1.85 5.98 30.61 0.18 -1.66 16 11 C -0.12 -2.61 5.42 30.61 0.17 -2.44 16 12 C 0.19 6.40 2.59 44.15 0.11 6.51 16 13 H 0.05 2.25 7.58 -2.39 -0.02 2.24 16 14 N -0.75 -30.71 4.85 -450.85 -2.18 -32.89 16 15 C 0.55 29.38 6.25 86.36 0.54 29.91 16 16 O -0.62 -38.24 12.75 -4.33 -0.06 -38.29 16 17 C -0.57 -31.03 9.54 24.83 0.24 -30.80 16 18 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 19 C 0.03 1.88 5.50 85.30 0.47 2.35 16 20 N -0.82 -48.49 11.83 21.83 0.26 -48.23 16 21 Si 0.99 40.12 29.56 68.60 2.03 42.15 16 22 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 23 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 25 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 26 H 0.11 5.83 4.33 -2.91 -0.01 5.82 16 27 H 0.17 2.39 8.05 -2.91 -0.02 2.36 16 28 H 0.10 1.05 8.12 -2.39 -0.02 1.03 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.40 14.01 8.57 -92.71 -0.79 13.22 16 35 H 0.27 14.74 8.29 -92.71 -0.77 13.97 16 Total: -1.00 -72.84 301.67 4.26 -68.59 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.34 Total: 24.62 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 3.52 Total: -1.67 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -1.57 Total: -95.39 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.06 Total: -38.29 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -72.84 4.26 -68.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334916464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.842 kcal (2) G-P(sol) polarization free energy of solvation -72.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds