Wall clock time and date at job start Mon Mar 30 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00077 * 2 1 4 4 H 1.08002 * 120.00363 * 201.87089 * 3 2 1 5 5 C 1.38810 * 120.00128 * 21.87097 * 3 2 1 6 6 N 1.31622 * 120.00076 * 9.75635 * 5 3 2 7 7 Si 1.86797 * 120.00317 * 189.75231 * 5 3 2 8 8 H 1.48509 * 109.47064 * 94.94769 * 7 5 3 9 9 H 1.48503 * 109.47383 * 214.94728 * 7 5 3 10 10 H 1.48504 * 109.47072 * 334.95185 * 7 5 3 11 11 C 1.46503 * 120.00024 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47370 * 270.00000 * 11 2 1 13 13 O 1.21292 * 119.99742 * 0.02562 * 12 11 2 14 14 N 1.34777 * 120.00029 * 179.97438 * 12 11 2 15 15 C 1.40162 * 120.00052 * 185.63114 * 14 12 11 16 16 C 1.38989 * 120.08620 * 133.08990 * 15 14 12 17 17 F 1.35095 * 120.03990 * 359.70420 * 16 15 14 18 18 C 1.38339 * 119.91240 * 179.97438 * 16 15 14 19 19 C 1.38266 * 120.08979 * 359.97438 * 18 16 15 20 20 C 1.38273 * 120.16977 * 0.02562 * 19 18 16 21 21 C 1.38335 * 120.08462 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.04358 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.46858 * 270.21378 * 1 2 3 24 24 H 1.08998 * 109.47311 * 30.21501 * 1 2 3 25 25 H 1.08996 * 109.46888 * 150.21340 * 1 2 3 26 26 H 0.96996 * 120.00262 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.46959 * 150.00140 * 11 2 1 28 28 H 1.09002 * 109.46975 * 30.00330 * 11 2 1 29 29 H 0.97007 * 119.99784 * 5.63548 * 14 12 11 30 30 H 1.08007 * 119.95830 * 180.02562 * 18 16 15 31 31 H 1.07998 * 119.91517 * 180.02562 * 19 18 16 32 32 H 1.07998 * 119.95394 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1714 1.2196 -0.3484 5 6 1.5306 2.3448 0.4478 6 7 0.3615 2.2764 1.0486 7 14 2.3566 4.0014 0.1979 8 1 1.8417 4.6287 -1.0458 9 1 2.0599 4.8823 1.3560 10 1 3.8250 3.8103 0.0846 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4215 13 8 2.0542 -1.0204 2.3431 14 7 3.1108 -2.8509 1.6683 15 6 3.2418 -3.3154 2.9842 16 6 2.9794 -4.6474 3.2823 17 9 2.5916 -5.4954 2.3048 18 6 3.1103 -5.1021 4.5822 19 6 3.5022 -4.2337 5.5842 20 6 3.7642 -2.9079 5.2917 21 6 3.6355 -2.4456 3.9942 22 9 3.8922 -1.1502 3.7092 23 1 -0.3633 0.0038 1.0277 24 1 -0.3634 0.8880 -0.5172 25 1 -0.3633 -0.8919 -0.5105 26 1 -0.0713 3.0862 1.3612 27 1 3.1499 -1.1386 -0.5133 28 1 1.6084 -2.0286 -0.5130 29 1 3.4967 -3.3554 0.9351 30 1 2.9070 -6.1371 4.8146 31 1 3.6039 -4.5918 6.5980 32 1 4.0696 -2.2326 6.0771 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340635402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:25 Heat of formation + Delta-G solvation = -84.559245 kcal Electronic energy + Delta-G solvation = -20739.789921 eV Core-core repulsion = 17143.928383 eV Total energy + Delta-G solvation = -3595.861538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.01614 -49.86407 -41.00757 -39.38222 -37.15168 -35.71201 -33.36422 -31.29318 -30.98457 -28.67051 -27.89278 -24.59010 -23.95786 -23.13717 -21.42390 -19.41121 -18.89675 -18.64009 -18.20548 -17.79240 -16.88090 -16.71719 -16.58051 -16.26616 -16.02121 -15.89844 -15.48020 -15.15478 -14.92260 -14.77471 -13.78232 -13.76127 -13.23202 -13.02556 -12.92375 -12.84912 -12.72055 -12.55026 -12.26821 -12.08158 -11.91554 -11.28388 -11.00585 -10.59680 -9.76019 -9.37535 -8.87228 -7.86056 -5.34705 -0.08275 -0.01179 1.42563 1.45175 1.54066 1.78379 2.04027 2.41428 2.48919 2.85020 3.32296 3.47588 3.63675 3.77029 3.81762 4.11644 4.20903 4.52812 4.53757 4.64180 4.78822 4.81034 4.99033 5.05642 5.20162 5.29865 5.40433 5.56068 5.70965 5.85556 6.23651 6.46796 7.09252 7.36361 7.79178 8.20448 9.18779 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028449 B = 0.005492 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.985581 B = 5096.737644 C = 5656.745121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.590 5.590 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.053 4.053 6 N -0.936 5.936 7 Si 0.973 3.027 8 H -0.277 1.277 9 H -0.300 1.300 10 H -0.268 1.268 11 C 0.132 3.868 12 C 0.467 3.533 13 O -0.539 6.539 14 N -0.676 5.676 15 C 0.054 3.946 16 C 0.095 3.905 17 F -0.131 7.131 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.155 4.155 21 C 0.087 3.913 22 F -0.144 7.144 23 H -0.015 1.015 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.246 0.754 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.424 0.576 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.960 -18.440 5.580 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.310 5.310 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.248 4.248 6 N -0.582 5.582 7 Si 0.801 3.199 8 H -0.203 1.203 9 H -0.227 1.227 10 H -0.192 1.192 11 C 0.001 3.999 12 C 0.253 3.747 13 O -0.412 6.412 14 N -0.328 5.328 15 C -0.043 4.043 16 C 0.073 3.927 17 F -0.110 7.110 18 C -0.157 4.157 19 C -0.078 4.078 20 C -0.174 4.174 21 C 0.066 3.934 22 F -0.123 7.123 23 H 0.003 0.997 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.263 0.737 30 H 0.199 0.801 31 H 0.207 0.793 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.497 -17.708 6.132 20.184 hybrid contribution 0.255 1.247 -0.417 1.339 sum 7.752 -16.461 5.715 19.072 Atomic orbital electron populations 1.20598 0.82225 0.97201 0.96609 1.44082 1.02382 1.01032 1.83478 1.19579 0.98185 0.86011 1.35720 0.90502 1.25929 0.98294 1.02405 0.98220 1.70306 1.18021 1.27243 1.42594 0.85164 0.78456 0.79437 0.76832 1.20290 1.22667 1.19227 1.21302 0.99619 0.89398 0.89589 1.24068 0.75859 0.78927 0.95815 1.90743 1.49875 1.52968 1.47649 1.43876 1.56860 1.26087 1.05948 1.18099 1.05704 0.93024 0.87432 1.17503 1.02369 0.85581 0.87257 1.91494 1.88547 1.69138 1.61772 1.21534 1.01681 1.03476 0.89032 1.21324 0.94906 0.90179 1.01399 1.21519 1.03330 0.99039 0.93496 1.18081 1.01623 0.78596 0.95136 1.91547 1.91181 1.35075 1.94475 0.99699 0.94505 0.94640 0.94467 0.88097 0.87149 0.73690 0.80115 0.79296 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.45 9.01 127.77 1.15 10.60 16 2 N -0.59 -31.05 2.42 -731.32 -1.77 -32.81 16 3 C -0.26 -15.28 9.69 84.03 0.81 -14.46 16 4 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 5 C -0.05 -3.19 5.14 84.86 0.44 -2.75 16 6 N -0.94 -59.70 10.50 21.65 0.23 -59.48 16 7 Si 0.97 47.66 29.56 68.60 2.03 49.69 16 8 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 9 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 C 0.13 5.29 6.19 85.63 0.53 5.82 16 12 C 0.47 20.16 7.41 87.66 0.65 20.81 16 13 O -0.54 -29.97 13.66 -3.07 -0.04 -30.01 16 14 N -0.68 -22.22 5.13 -303.14 -1.56 -23.78 16 15 C 0.05 1.72 6.08 38.17 0.23 1.95 16 16 C 0.09 2.32 7.31 22.47 0.16 2.48 16 17 F -0.13 -3.13 17.08 44.97 0.77 -2.37 16 18 C -0.14 -2.31 10.02 22.30 0.22 -2.09 16 19 C -0.06 -0.93 10.04 22.28 0.22 -0.71 16 20 C -0.15 -3.69 10.02 22.30 0.22 -3.46 16 21 C 0.09 3.00 6.63 22.47 0.15 3.15 16 22 F -0.14 -6.44 14.41 44.97 0.65 -5.79 16 23 H -0.02 -0.94 7.67 -2.39 -0.02 -0.96 16 24 H 0.04 2.07 6.82 -2.39 -0.02 2.06 16 25 H 0.04 1.54 7.89 -2.39 -0.02 1.52 16 26 H 0.25 15.23 8.31 -92.71 -0.77 14.45 16 27 H 0.10 3.54 8.03 -2.39 -0.02 3.52 16 28 H 0.11 3.53 7.89 -2.39 -0.02 3.52 16 29 H 0.42 10.35 8.83 -92.70 -0.82 9.53 16 30 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -83.17 289.07 5.45 -77.72 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.35 Total: 5.47 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 4.80 Total: 21.35 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -3.10 Total: -116.07 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.04 Total: -30.01 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 1.42 Total: -8.16 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -83.17 5.45 -77.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340635402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.840 kcal (2) G-P(sol) polarization free energy of solvation -83.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds