Wall clock time and date at job start Mon Mar 30 2020 01:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99996 * 2 1 4 4 O 1.20828 * 119.99773 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99840 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47010 * 179.97438 * 5 3 2 7 7 C 1.36117 * 120.00093 * 264.57960 * 6 5 3 8 8 H 1.08000 * 120.00260 * 139.29004 * 7 6 5 9 9 C 1.39587 * 119.99752 * 319.29211 * 7 6 5 10 10 N 1.31012 * 119.99992 * 165.33537 * 9 7 6 11 11 Si 1.86797 * 119.99878 * 345.32737 * 9 7 6 12 12 H 1.48503 * 109.47046 * 95.38714 * 11 9 7 13 13 H 1.48501 * 109.47068 * 215.37795 * 11 9 7 14 14 H 1.48496 * 109.47530 * 335.38187 * 11 9 7 15 15 C 1.34781 * 119.99879 * 84.57404 * 6 5 3 16 16 O 1.21506 * 119.99751 * 355.04883 * 15 6 5 17 17 C 1.48833 * 119.99730 * 175.31922 * 15 6 5 18 18 O 1.21439 * 119.99870 * 0.94108 * 17 15 6 19 19 N 1.34780 * 119.99568 * 180.94776 * 17 15 6 20 20 C 1.46500 * 119.99490 * 179.97438 * 19 17 15 21 21 C 1.52997 * 117.49604 * 223.74284 * 20 19 17 22 22 C 1.53002 * 117.49659 * 155.08064 * 20 19 17 23 23 H 1.08997 * 109.47056 * 60.00516 * 1 2 3 24 24 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47424 * 299.99935 * 1 2 3 26 26 H 1.08996 * 109.47440 * 59.99942 * 5 3 2 27 27 H 1.08998 * 109.47214 * 299.99003 * 5 3 2 28 28 H 0.96999 * 120.00441 * 179.97438 * 10 9 7 29 29 H 0.96995 * 120.00360 * 359.97438 * 19 17 15 30 30 H 1.09000 * 115.55283 * 9.41929 * 20 19 17 31 31 H 1.08996 * 117.50242 * 0.02562 * 21 20 19 32 32 H 1.09000 * 117.49805 * 145.02694 * 21 20 19 33 33 H 1.08992 * 117.50160 * 214.97819 * 22 20 19 34 34 H 1.09001 * 117.49661 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2810 3.3006 -1.1749 8 1 3.9595 4.3174 -1.3453 9 6 5.0035 2.6229 -2.1583 10 7 5.0479 3.0939 -3.3801 11 14 5.9073 1.0446 -1.7324 12 1 5.0523 -0.1218 -2.0696 13 1 7.1710 0.9728 -2.5090 14 1 6.2171 1.0280 -0.2802 15 6 4.0674 3.3576 1.1607 16 8 3.7145 2.8322 2.1980 17 6 4.5885 4.7516 1.1723 18 8 4.9205 5.2843 0.1327 19 7 4.6921 5.4227 2.3365 20 6 5.2056 6.7947 2.3479 21 6 6.2142 7.1624 3.4381 22 6 4.7818 7.6980 3.5078 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.9557 0.7809 -0.8908 27 1 3.9564 0.7807 0.8892 28 1 5.5502 2.6233 -4.0634 29 1 4.4267 4.9973 3.1668 30 1 5.3311 7.2579 1.3692 31 1 6.4960 6.3834 4.1465 32 1 7.0030 7.8678 3.1767 33 1 4.6289 8.7554 3.2924 34 1 4.1206 7.2715 4.2622 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348794665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:38 Heat of formation + Delta-G solvation = -93.879133 kcal Electronic energy + Delta-G solvation = -21232.588375 eV Core-core repulsion = 17747.410212 eV Total energy + Delta-G solvation = -3485.178163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26548 -39.51129 -37.99537 -36.51791 -35.98936 -35.12369 -32.27963 -31.99317 -29.19965 -26.85268 -25.39879 -23.72101 -22.34450 -21.33374 -20.65682 -19.42207 -18.32824 -17.44987 -16.77405 -16.36509 -16.03040 -15.57400 -15.29266 -15.12792 -14.73013 -14.21506 -13.72847 -13.45167 -13.23538 -12.96291 -12.64809 -12.47930 -12.29506 -11.92316 -11.68500 -11.55262 -11.24556 -11.05489 -10.74001 -10.44867 -10.42360 -10.38005 -9.99997 -9.92844 -9.37644 -8.51755 -8.40049 -7.99265 -6.53384 -4.14273 2.27331 2.76436 2.90385 2.98014 3.12430 3.13690 3.31981 3.88537 3.96298 4.27862 4.41811 4.87909 4.91906 5.05899 5.10432 5.30404 5.36744 5.40194 5.48234 5.57185 5.64000 5.73043 5.77163 5.85988 6.09551 6.11191 6.75912 6.86887 6.99039 7.78535 7.84577 8.21998 8.28699 8.67260 8.86007 9.09985 9.33088 10.54480 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.007180 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.655418 B = 3898.681319 C = 4978.031096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.453 3.547 4 O -0.486 6.486 5 C 0.102 3.898 6 N -0.402 5.402 7 C -0.325 4.325 8 H 0.133 0.867 9 C 0.066 3.934 10 N -0.840 5.840 11 Si 0.861 3.139 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.256 1.256 15 C 0.461 3.539 16 O -0.587 6.587 17 C 0.514 3.486 18 O -0.479 6.479 19 N -0.695 5.695 20 C 0.089 3.911 21 C -0.197 4.197 22 C -0.193 4.193 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.279 0.721 29 H 0.406 0.594 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 -0.937 8.854 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.293 3.707 4 O -0.371 6.371 5 C -0.023 4.023 6 N -0.121 5.121 7 C -0.453 4.453 8 H 0.150 0.850 9 C -0.143 4.143 10 N -0.474 5.474 11 Si 0.687 3.313 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.180 1.180 15 C 0.248 3.752 16 O -0.473 6.473 17 C 0.296 3.704 18 O -0.350 6.350 19 N -0.348 5.348 20 C -0.017 4.017 21 C -0.236 4.236 22 C -0.231 4.231 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.090 0.910 29 H 0.242 0.758 30 H 0.156 0.844 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.448 -0.528 8.322 8.464 hybrid contribution 0.148 -0.947 0.357 1.023 sum -1.300 -1.476 8.679 8.899 Atomic orbital electron populations 1.23159 0.77288 1.02941 1.02369 1.86508 1.22845 1.34214 1.84915 1.24439 0.92482 0.81346 0.72440 1.90635 1.66484 1.36235 1.43732 1.21582 0.87469 0.87954 1.05252 1.43074 1.53954 1.08179 1.06942 1.19715 1.34013 1.01723 0.89852 0.84982 1.25560 0.95804 0.98100 0.94861 1.69486 1.37374 1.39555 1.00994 0.87167 0.80678 0.83001 0.80427 1.19315 1.20306 1.18026 1.19656 0.84208 0.87889 0.83428 1.90627 1.54112 1.70519 1.32054 1.19844 0.79707 0.87316 0.83502 1.90821 1.45280 1.68121 1.30751 1.45121 1.66339 1.13253 1.10124 1.21536 1.00407 0.83631 0.96164 1.23426 0.93045 1.03866 1.03251 1.23369 0.97973 0.99960 1.01836 0.92101 0.88611 0.92233 0.87149 0.86737 0.90994 0.75832 0.84382 0.88601 0.88193 0.88085 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.68 10.57 -39.26 -0.41 -7.09 16 3 C 0.45 9.86 7.99 36.00 0.29 10.15 16 4 O -0.49 -11.95 16.06 -18.75 -0.30 -12.25 16 5 C 0.10 2.25 4.35 -5.19 -0.02 2.22 16 6 N -0.40 -10.07 1.69 -116.86 -0.20 -10.27 16 7 C -0.32 -8.92 8.18 -15.15 -0.12 -9.05 16 8 H 0.13 4.05 6.35 -52.49 -0.33 3.71 16 9 C 0.07 1.77 5.38 -17.40 -0.09 1.68 16 10 N -0.84 -23.38 13.94 55.53 0.77 -22.61 16 11 Si 0.86 19.25 24.72 -169.99 -4.20 15.05 16 12 H -0.27 -5.52 6.79 56.52 0.38 -5.14 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.26 -5.61 7.00 56.52 0.40 -5.22 16 15 C 0.46 11.17 7.48 -11.87 -0.09 11.08 16 16 O -0.59 -14.12 16.20 5.36 0.09 -14.03 16 17 C 0.51 11.60 7.78 -11.87 -0.09 11.51 16 18 O -0.48 -12.12 13.07 5.42 0.07 -12.05 16 19 N -0.69 -12.34 5.56 -54.43 -0.30 -12.65 16 20 C 0.09 1.32 6.43 -67.93 -0.44 0.88 16 21 C -0.20 -2.27 10.46 -26.69 -0.28 -2.55 16 22 C -0.19 -2.16 10.46 -26.69 -0.28 -2.44 16 23 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 25 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 26 H 0.11 2.39 3.41 -51.93 -0.18 2.21 16 27 H 0.11 2.27 7.67 -51.93 -0.40 1.87 16 28 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 29 H 0.41 6.59 8.29 -40.82 -0.34 6.25 16 30 H 0.14 2.21 7.40 -51.93 -0.38 1.82 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -32.24 300.14 -3.77 -36.02 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.75 Total: 10.30 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: -0.06 Total: 25.06 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.27 Total: -45.52 kcal Atomic # 8 Polarization: -44.87 SS G_CDS: -0.56 Total: -45.43 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.20 Total: 15.05 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.24 -3.77 -36.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348794665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.864 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds