Wall clock time and date at job start Mon Mar 30 2020 01:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99996 * 2 1 4 4 O 1.20828 * 119.99773 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99840 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.47010 * 179.97438 * 5 3 2 7 7 C 1.36117 * 120.00093 * 264.57960 * 6 5 3 8 8 H 1.08000 * 120.00260 * 139.29004 * 7 6 5 9 9 C 1.39587 * 119.99752 * 319.29211 * 7 6 5 10 10 N 1.31012 * 119.99992 * 165.33537 * 9 7 6 11 11 Si 1.86797 * 119.99878 * 345.32737 * 9 7 6 12 12 H 1.48503 * 109.47046 * 95.38714 * 11 9 7 13 13 H 1.48501 * 109.47068 * 215.37795 * 11 9 7 14 14 H 1.48496 * 109.47530 * 335.38187 * 11 9 7 15 15 C 1.34781 * 119.99879 * 84.57404 * 6 5 3 16 16 O 1.21506 * 119.99751 * 355.04883 * 15 6 5 17 17 C 1.48833 * 119.99730 * 175.31922 * 15 6 5 18 18 O 1.21439 * 119.99870 * 0.94108 * 17 15 6 19 19 N 1.34780 * 119.99568 * 180.94776 * 17 15 6 20 20 C 1.46500 * 119.99490 * 179.97438 * 19 17 15 21 21 C 1.52997 * 117.49604 * 223.74284 * 20 19 17 22 22 C 1.53002 * 117.49659 * 155.08064 * 20 19 17 23 23 H 1.08997 * 109.47056 * 60.00516 * 1 2 3 24 24 H 1.09007 * 109.46946 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47424 * 299.99935 * 1 2 3 26 26 H 1.08996 * 109.47440 * 59.99942 * 5 3 2 27 27 H 1.08998 * 109.47214 * 299.99003 * 5 3 2 28 28 H 0.96999 * 120.00441 * 179.97438 * 10 9 7 29 29 H 0.96995 * 120.00360 * 359.97438 * 19 17 15 30 30 H 1.09000 * 115.55283 * 9.41929 * 20 19 17 31 31 H 1.08996 * 117.50242 * 0.02562 * 21 20 19 32 32 H 1.09000 * 117.49805 * 145.02694 * 21 20 19 33 33 H 1.08992 * 117.50160 * 214.97819 * 22 20 19 34 34 H 1.09001 * 117.49661 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2810 3.3006 -1.1749 8 1 3.9595 4.3174 -1.3453 9 6 5.0035 2.6229 -2.1583 10 7 5.0479 3.0939 -3.3801 11 14 5.9073 1.0446 -1.7324 12 1 5.0523 -0.1218 -2.0696 13 1 7.1710 0.9728 -2.5090 14 1 6.2171 1.0280 -0.2802 15 6 4.0674 3.3576 1.1607 16 8 3.7145 2.8322 2.1980 17 6 4.5885 4.7516 1.1723 18 8 4.9205 5.2843 0.1327 19 7 4.6921 5.4227 2.3365 20 6 5.2056 6.7947 2.3479 21 6 6.2142 7.1624 3.4381 22 6 4.7818 7.6980 3.5078 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.9557 0.7809 -0.8908 27 1 3.9564 0.7807 0.8892 28 1 5.5502 2.6233 -4.0634 29 1 4.4267 4.9973 3.1668 30 1 5.3311 7.2579 1.3692 31 1 6.4960 6.3834 4.1465 32 1 7.0030 7.8678 3.1767 33 1 4.6289 8.7554 3.2924 34 1 4.1206 7.2715 4.2622 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348794665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:37 Heat of formation + Delta-G solvation = -118.146247 kcal Electronic energy + Delta-G solvation = -21233.640676 eV Core-core repulsion = 17747.410212 eV Total energy + Delta-G solvation = -3486.230464 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.01203 -41.16774 -39.58797 -37.98005 -37.65429 -36.94058 -34.20359 -33.56743 -30.87013 -28.19246 -27.35655 -25.38857 -23.25958 -22.82795 -22.13173 -21.20509 -20.16268 -19.13535 -18.47390 -17.94907 -17.58517 -17.21389 -16.89371 -16.87054 -16.50095 -15.48593 -15.37259 -15.04969 -14.81203 -14.73820 -14.28707 -14.13239 -13.68777 -13.57209 -13.14302 -12.99828 -12.51649 -12.46941 -12.33842 -12.17306 -11.88305 -11.84105 -11.74083 -11.45618 -11.20786 -10.41590 -9.96779 -9.72917 -8.53158 -6.22179 0.47170 1.06925 1.17524 1.32196 1.38507 1.41223 1.78543 2.10504 2.31050 2.74298 2.95944 3.03820 3.67373 3.78856 3.83670 3.84478 4.06982 4.10071 4.10313 4.30508 4.31091 4.65162 4.76883 4.79486 5.02560 5.06410 5.23138 5.24035 5.46606 5.88549 6.08870 6.30312 6.64966 6.73502 6.99622 7.17806 7.37945 8.59078 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.007180 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.655418 B = 3898.681319 C = 4978.031096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.456 3.544 4 O -0.525 6.525 5 C 0.094 3.906 6 N -0.413 5.413 7 C -0.335 4.335 8 H 0.084 0.916 9 C 0.021 3.979 10 N -0.887 5.887 11 Si 0.920 3.080 12 H -0.233 1.233 13 H -0.273 1.273 14 H -0.248 1.248 15 C 0.457 3.543 16 O -0.586 6.586 17 C 0.507 3.493 18 O -0.519 6.519 19 N -0.673 5.673 20 C 0.040 3.960 21 C -0.174 4.174 22 C -0.165 4.165 23 H 0.056 0.944 24 H 0.143 0.857 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.141 0.859 28 H 0.286 0.714 29 H 0.415 0.585 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -2.472 10.999 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.298 3.702 4 O -0.413 6.413 5 C -0.030 4.030 6 N -0.133 5.133 7 C -0.464 4.464 8 H 0.102 0.898 9 C -0.185 4.185 10 N -0.522 5.522 11 Si 0.742 3.258 12 H -0.158 1.158 13 H -0.199 1.199 14 H -0.171 1.171 15 C 0.244 3.756 16 O -0.472 6.472 17 C 0.289 3.711 18 O -0.393 6.393 19 N -0.327 5.327 20 C -0.065 4.065 21 C -0.213 4.213 22 C -0.203 4.203 23 H 0.075 0.925 24 H 0.161 0.839 25 H 0.078 0.922 26 H 0.135 0.865 27 H 0.158 0.842 28 H 0.096 0.904 29 H 0.252 0.748 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.179 -2.074 10.521 10.788 hybrid contribution -0.055 -0.389 -0.183 0.433 sum -1.234 -2.463 10.337 10.698 Atomic orbital electron populations 1.23596 0.74619 1.06045 1.02293 1.86478 1.25282 1.31822 1.83999 1.24326 0.92482 0.81799 0.71617 1.90623 1.67233 1.37696 1.45713 1.21738 0.88167 0.86324 1.06745 1.43056 1.54639 1.09380 1.06224 1.19204 1.35490 1.00531 0.91146 0.89819 1.26292 0.95975 1.02017 0.94198 1.69592 1.38622 1.41840 1.02178 0.86232 0.79662 0.79361 0.80583 1.15786 1.19919 1.17120 1.20069 0.83579 0.88579 0.83406 1.90600 1.53970 1.70793 1.31841 1.19808 0.79776 0.87087 0.84394 1.90815 1.47387 1.68823 1.32280 1.45018 1.64678 1.14177 1.08812 1.21761 1.05015 0.82644 0.97114 1.23526 0.93551 1.03762 1.00444 1.23496 0.97834 1.00142 0.98846 0.92485 0.83866 0.92152 0.86482 0.84190 0.90388 0.74801 0.86492 0.87713 0.86438 0.86092 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.56 113.37 1.20 1.89 16 2 O -0.36 -12.26 10.57 -51.42 -0.54 -12.80 16 3 C 0.46 19.50 7.99 71.24 0.57 20.07 16 4 O -0.52 -26.08 16.06 21.96 0.35 -25.72 16 5 C 0.09 4.03 4.35 85.63 0.37 4.41 16 6 N -0.41 -20.99 1.69 -641.93 -1.08 -22.07 16 7 C -0.34 -19.22 8.18 84.35 0.69 -18.53 16 8 H 0.08 5.54 6.35 -2.91 -0.02 5.52 16 9 C 0.02 1.14 5.38 85.14 0.46 1.60 16 10 N -0.89 -51.12 13.94 21.77 0.30 -50.82 16 11 Si 0.92 38.98 24.72 68.60 1.70 40.67 16 12 H -0.23 -8.62 6.79 99.48 0.68 -7.94 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 14 H -0.25 -10.08 7.00 99.48 0.70 -9.38 16 15 C 0.46 22.42 7.48 87.08 0.65 23.07 16 16 O -0.59 -27.81 16.20 -3.73 -0.06 -27.87 16 17 C 0.51 23.67 7.78 87.08 0.68 24.35 16 18 O -0.52 -27.87 13.07 -3.52 -0.05 -27.92 16 19 N -0.67 -23.93 5.56 -444.45 -2.47 -26.40 16 20 C 0.04 1.16 6.43 44.99 0.29 1.45 16 21 C -0.17 -3.57 10.46 30.62 0.32 -3.25 16 22 C -0.17 -3.26 10.46 30.62 0.32 -2.94 16 23 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 24 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.06 1.54 8.13 -2.39 -0.02 1.53 16 26 H 0.12 4.83 3.41 -2.39 -0.01 4.82 16 27 H 0.14 5.22 7.67 -2.39 -0.02 5.20 16 28 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 29 H 0.41 13.05 8.29 -92.71 -0.77 12.29 16 30 H 0.12 3.91 7.40 -2.39 -0.02 3.89 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -73.82 300.14 4.04 -69.78 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.34 Total: 31.02 kcal Atomic # 6 Polarization: 46.58 SS G_CDS: 5.54 Total: 52.12 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -3.25 Total: -99.29 kcal Atomic # 8 Polarization: -94.01 SS G_CDS: -0.30 Total: -94.31 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.70 Total: 40.67 kcal Total: -73.82 4.04 -69.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348794665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.362 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds