Wall clock time and date at job start Mon Mar 30 2020 01:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00186 * 2 1 4 4 H 1.48498 * 109.47031 * 269.99465 * 3 2 1 5 5 H 1.48498 * 109.47116 * 29.99523 * 3 2 1 6 6 H 1.48498 * 109.47073 * 149.99758 * 3 2 1 7 7 C 1.37875 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99910 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00365 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47196 * 179.97438 * 10 9 7 12 12 O 1.21269 * 119.99954 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00297 * 179.97438 * 11 10 9 14 14 C 1.39148 * 120.00339 * 185.08850 * 13 11 10 15 15 C 1.40140 * 119.22171 * 174.90662 * 14 13 11 16 16 C 1.36274 * 119.88305 * 179.78322 * 15 14 13 17 17 C 1.40964 * 118.27205 * 0.46740 * 16 15 14 18 18 C 1.40355 * 121.27415 * 179.82122 * 17 16 15 19 19 C 1.36190 * 119.64102 * 179.73720 * 18 17 16 20 20 C 1.39310 * 120.85175 * 359.97438 * 19 18 17 21 21 C 1.36117 * 121.03837 * 359.97438 * 20 19 18 22 22 C 1.40566 * 119.75912 * 0.02582 * 21 20 19 23 23 N 1.31638 * 119.21805 * 354.93813 * 14 13 11 24 24 H 0.97003 * 120.00364 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47041 * 59.99995 * 9 7 2 26 26 H 1.08999 * 109.47024 * 299.99910 * 9 7 2 27 27 H 1.08997 * 109.47635 * 59.99500 * 10 9 7 28 28 H 1.08999 * 109.47218 * 299.99400 * 10 9 7 29 29 H 0.97004 * 120.00125 * 5.09803 * 13 11 10 30 30 H 1.08008 * 120.05807 * 0.05097 * 15 14 13 31 31 H 1.08003 * 120.86641 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.17658 * 359.69391 * 18 17 16 33 33 H 1.07993 * 119.57574 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.47814 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.12017 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1348 -1.5865 0.0005 13 7 6.2023 -3.8038 0.0014 14 6 7.5897 -3.8062 0.1082 15 6 8.2655 -5.0292 0.2153 16 6 9.6244 -5.0475 0.3162 17 6 10.3103 -3.8160 0.3190 18 6 11.7089 -3.7612 0.4238 19 6 12.3380 -2.5533 0.4178 20 6 11.6112 -1.3699 0.3085 21 6 10.2541 -1.3867 0.2042 22 6 9.5694 -2.6143 0.2067 23 7 8.2363 -2.6596 0.1069 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6801 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.6584 -3.1503 -0.8891 28 1 3.6578 -3.1506 0.8908 29 1 5.7202 -4.6423 -0.0730 30 1 7.7106 -5.9559 0.2135 31 1 10.1613 -5.9809 0.3990 32 1 12.2830 -4.6720 0.5093 33 1 13.4141 -2.5124 0.4988 34 1 12.1328 -0.4242 0.3056 35 1 9.7055 -0.4603 0.1198 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359840499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:21 Heat of formation + Delta-G solvation = -0.049739 kcal Electronic energy + Delta-G solvation = -19118.255958 eV Core-core repulsion = 16080.288558 eV Total energy + Delta-G solvation = -3037.967401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.04421 -40.65812 -38.14572 -35.60355 -35.41680 -34.39476 -33.33013 -31.08283 -30.59535 -28.19517 -25.44342 -24.45974 -23.18625 -22.86128 -21.26946 -19.75856 -19.16412 -18.25184 -18.03900 -17.25819 -16.79122 -16.31416 -16.03768 -15.49554 -15.43423 -15.27018 -14.92395 -14.65316 -14.40926 -14.26207 -13.93104 -13.45446 -13.14000 -12.87072 -12.51335 -12.38526 -12.14022 -11.99666 -11.80495 -11.52596 -11.43158 -11.22158 -11.14434 -10.80137 -10.00390 -9.41979 -8.98373 -8.33871 -6.36268 -0.46510 -0.14652 1.08863 1.30202 1.32402 1.47809 1.54745 1.88645 2.17726 2.32513 3.01940 3.20863 3.32902 3.71741 3.80305 3.89082 4.04172 4.15016 4.30237 4.36353 4.39521 4.46126 4.54073 4.82142 4.90972 4.97479 5.04664 5.13657 5.27565 5.35125 5.40582 5.44670 5.53338 5.57934 5.71788 5.96497 6.19961 6.26049 6.69925 7.00472 7.29168 7.37816 8.81672 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.031232 B = 0.003858 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.309488 B = 7255.498763 C = 8126.786628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.004 3.996 10 C -0.111 4.111 11 C 0.501 3.499 12 O -0.521 6.521 13 N -0.648 5.648 14 C 0.363 3.637 15 C -0.193 4.193 16 C -0.024 4.024 17 C -0.149 4.149 18 C -0.079 4.079 19 C -0.134 4.134 20 C -0.086 4.086 21 C -0.140 4.140 22 C 0.124 3.876 23 N -0.533 5.533 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.438 0.562 30 H 0.182 0.818 31 H 0.191 0.809 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.807 -14.979 0.938 30.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.034 4.034 10 C -0.150 4.150 11 C 0.289 3.711 12 O -0.393 6.393 13 N -0.298 5.298 14 C 0.117 3.883 15 C -0.215 4.215 16 C -0.049 4.049 17 C -0.152 4.152 18 C -0.097 4.097 19 C -0.152 4.152 20 C -0.106 4.106 21 C -0.159 4.159 22 C 0.002 3.998 23 N -0.251 5.251 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.279 0.721 30 H 0.199 0.801 31 H 0.209 0.791 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.167 0.833 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 26.576 -13.239 0.880 29.704 hybrid contribution -0.383 0.327 -0.045 0.506 sum 26.193 -12.911 0.835 29.214 Atomic orbital electron populations 1.70004 1.07625 1.28085 1.52484 1.25739 0.95454 1.02616 0.94345 0.85889 0.79132 0.79945 0.79090 1.19441 1.20149 1.19111 1.21401 0.90970 0.93881 1.50233 0.92620 1.19229 0.94196 0.93737 0.96232 1.21530 0.87604 1.00142 1.05757 1.21694 0.91384 0.83249 0.74807 1.90756 1.70779 1.32555 1.45215 1.43692 1.03756 1.11100 1.71238 1.19233 0.85286 0.90648 0.93086 1.21678 0.96161 0.97139 1.06534 1.21817 0.93331 0.98147 0.91594 1.19198 0.96358 0.93800 1.05845 1.21397 0.91457 1.00158 0.96710 1.21296 1.01842 0.91617 1.00396 1.21221 0.92446 1.00668 0.96264 1.20889 0.95539 0.96051 1.03409 1.19134 0.88122 0.94789 0.97754 1.67987 1.09492 1.28635 1.18944 0.92321 0.97472 0.97510 0.87057 0.87173 0.72074 0.80110 0.79146 0.81385 0.82104 0.83306 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.96 21.45 0.30 -59.04 16 2 C 0.02 0.99 5.47 84.66 0.46 1.45 16 3 Si 0.93 47.96 27.47 68.60 1.88 49.85 16 4 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -13.84 6.54 99.48 0.65 -13.19 16 7 C -0.53 -30.60 9.66 25.60 0.25 -30.36 16 8 H 0.06 3.35 7.99 -2.91 -0.02 3.33 16 9 C 0.00 0.21 3.33 29.85 0.10 0.31 16 10 C -0.11 -4.18 5.64 29.85 0.17 -4.01 16 11 C 0.50 19.01 7.79 87.66 0.68 19.69 16 12 O -0.52 -25.34 14.21 -3.00 -0.04 -25.38 16 13 N -0.65 -17.79 5.38 -308.28 -1.66 -19.45 16 14 C 0.36 10.55 7.42 133.49 0.99 11.55 16 15 C -0.19 -3.43 9.84 22.27 0.22 -3.22 16 16 C -0.02 -0.36 9.88 22.48 0.22 -0.14 16 17 C -0.15 -3.22 5.74 -21.26 -0.12 -3.34 16 18 C -0.08 -1.14 9.77 22.31 0.22 -0.93 16 19 C -0.13 -1.93 9.96 22.05 0.22 -1.71 16 20 C -0.09 -1.71 9.94 22.03 0.22 -1.49 16 21 C -0.14 -4.07 9.98 22.34 0.22 -3.85 16 22 C 0.12 3.88 6.60 40.25 0.27 4.14 16 23 N -0.53 -19.85 7.81 -185.98 -1.45 -21.31 16 24 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 26 H 0.01 0.35 7.53 -2.39 -0.02 0.33 16 27 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 28 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 29 H 0.44 7.38 8.69 -92.71 -0.81 6.57 16 30 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.19 0.94 8.06 -2.91 -0.02 0.92 16 32 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 33 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.11 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -86.27 304.90 3.40 -82.88 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 0.25 Total: 4.35 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.12 Total: -11.90 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -2.81 Total: -99.80 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.04 Total: -25.38 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.88 Total: 49.85 kcal Total: -86.27 3.40 -82.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359840499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.827 kcal (2) G-P(sol) polarization free energy of solvation -86.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds