Wall clock time and date at job start Mon Mar 30 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 299.99847 * 3 2 1 6 6 H 1.48506 * 109.46890 * 59.99895 * 3 2 1 7 7 C 1.38953 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00219 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.36211 * 120.66767 * 264.71967 * 14 13 12 16 16 N 1.32575 * 121.87103 * 179.74928 * 15 14 13 17 17 C 1.31268 * 122.77979 * 0.54504 * 16 15 14 18 18 C 1.40393 * 119.87995 * 359.73542 * 17 16 15 19 19 C 1.40379 * 122.07559 * 179.97438 * 18 17 16 20 20 C 1.36177 * 119.51180 * 179.97438 * 19 18 17 21 21 C 1.39373 * 121.08730 * 0.04057 * 20 19 18 22 22 C 1.36210 * 121.02851 * 359.97438 * 21 20 19 23 23 C 1.40233 * 119.48181 * 359.97438 * 22 21 20 24 24 H 0.97002 * 119.99781 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00141 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 27 27 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 29 29 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 30 30 H 1.07998 * 119.05768 * 359.97438 * 15 14 13 31 31 H 1.07996 * 120.05827 * 179.75134 * 17 16 15 32 32 H 1.07992 * 120.24977 * 0.04165 * 19 18 17 33 33 H 1.08000 * 119.45070 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.48453 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.25917 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 6 2.2378 -6.0259 -0.0004 14 6 1.4843 -7.3310 -0.0003 15 6 1.2298 -7.9863 1.1664 16 7 0.5649 -9.1329 1.1946 17 6 0.1164 -9.7212 0.1103 18 6 0.3306 -9.1309 -1.1453 19 6 -0.1283 -9.7199 -2.3341 20 6 0.1083 -9.1014 -3.5240 21 6 0.7997 -7.8926 -3.5819 22 6 1.2599 -7.2921 -2.4492 23 6 1.0341 -7.8994 -1.2055 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9208 0.8885 28 1 2.8639 -5.9682 0.8901 29 1 2.8652 -5.9682 -0.8899 30 1 1.5763 -7.5576 2.0951 31 1 -0.4168 -10.6575 0.1840 32 1 -0.6658 -10.6561 -2.3051 33 1 -0.2456 -9.5552 -4.4379 34 1 0.9732 -7.4248 -4.5397 35 1 1.7946 -6.3557 -2.5085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361170616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:42 Heat of formation + Delta-G solvation = -0.044317 kcal Electronic energy + Delta-G solvation = -19201.086976 eV Core-core repulsion = 16163.119810 eV Total energy + Delta-G solvation = -3037.967166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96299 -38.28089 -37.38163 -34.89602 -33.87352 -31.43534 -31.23488 -30.81303 -29.27066 -25.73573 -24.27118 -23.62735 -23.18939 -20.84913 -19.09067 -18.00772 -17.85032 -17.59080 -16.46524 -15.86564 -15.02044 -14.67647 -14.53618 -14.36231 -14.23755 -13.90627 -13.72621 -13.26918 -12.81550 -12.45755 -12.26922 -12.19004 -11.86039 -11.69068 -11.51761 -11.13403 -10.98348 -10.65817 -10.36010 -10.24954 -9.98297 -9.55195 -9.44793 -9.14250 -8.45284 -8.01598 -7.99779 -6.44072 -3.85190 0.31309 0.84373 1.86222 3.00496 3.14634 3.25499 3.32679 3.88347 4.01399 4.15957 4.34558 4.50421 4.66120 4.70112 4.83136 4.90239 5.08287 5.14318 5.21539 5.30627 5.45814 5.54246 5.60557 5.70444 5.81232 5.89982 6.00030 6.01816 6.24651 6.31162 6.40681 6.48092 6.53809 6.63590 6.77782 7.53147 7.96145 8.03368 8.57529 9.14844 9.51993 10.02599 10.73546 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.003792 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.334635 B = 7381.563016 C = 7820.686473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.439 3.561 11 O -0.598 6.598 12 C -0.124 4.124 13 C -0.058 4.058 14 C -0.101 4.101 15 C 0.070 3.930 16 N -0.483 5.483 17 C 0.128 3.872 18 C -0.110 4.110 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.103 4.103 23 C -0.023 4.023 24 H 0.271 0.729 25 H 0.393 0.607 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 -17.767 -4.960 18.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.197 5.197 10 C 0.225 3.775 11 O -0.484 6.484 12 C -0.165 4.165 13 C -0.096 4.096 14 C -0.103 4.103 15 C -0.073 4.073 16 N -0.190 5.190 17 C -0.043 4.043 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.137 4.137 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.028 4.028 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.343 -17.862 -4.059 18.467 hybrid contribution -0.212 1.301 -0.861 1.574 sum -2.555 -16.561 -4.920 17.465 Atomic orbital electron populations 1.69624 1.05974 1.28119 1.50418 1.25280 0.95624 0.99781 0.97217 0.85805 0.79721 0.81106 0.77749 1.19188 1.20717 1.20706 1.19782 0.93431 0.82304 1.47615 0.87829 1.41924 1.09279 1.04716 1.63739 1.19891 0.88238 0.84962 0.84384 1.90518 1.13948 1.87429 1.56466 1.21466 0.98531 0.93399 1.03087 1.20243 0.96523 0.88060 1.04797 1.20875 0.98552 0.97859 0.92982 1.22129 0.96237 0.91132 0.97811 1.67394 1.09246 1.10103 1.32218 1.23092 0.95952 0.98591 0.86689 1.19039 1.00644 0.95855 0.95664 1.20938 0.99216 0.99712 0.91494 1.20924 0.98989 0.95730 0.98050 1.21010 0.97268 0.95357 0.98790 1.21180 0.99437 1.00208 0.91262 1.18111 0.96770 0.93869 0.94017 0.91869 0.77365 0.90524 0.90318 0.89723 0.89958 0.82895 0.82344 0.85183 0.85778 0.85559 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.23 7.78 -10.99 -0.09 10.14 16 11 O -0.60 -15.89 15.56 5.54 0.09 -15.80 16 12 C -0.12 -2.16 5.68 -27.89 -0.16 -2.32 16 13 C -0.06 -0.91 4.11 -27.88 -0.11 -1.02 16 14 C -0.10 -1.43 5.16 -104.44 -0.54 -1.97 16 15 C 0.07 0.97 10.72 -17.96 -0.19 0.78 16 16 N -0.48 -6.63 10.30 -13.16 -0.14 -6.77 16 17 C 0.13 1.48 11.05 -16.98 -0.19 1.30 16 18 C -0.11 -1.32 5.74 -106.86 -0.61 -1.93 16 19 C -0.09 -0.88 9.81 -39.52 -0.39 -1.27 16 20 C -0.12 -1.09 9.94 -39.90 -0.40 -1.48 16 21 C -0.10 -1.09 9.95 -39.89 -0.40 -1.49 16 22 C -0.10 -1.29 9.33 -39.56 -0.37 -1.66 16 23 C -0.02 -0.31 5.75 -106.81 -0.61 -0.92 16 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 29 H 0.08 1.33 6.79 -51.93 -0.35 0.97 16 30 H 0.15 1.90 8.05 -52.49 -0.42 1.48 16 31 H 0.16 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.14 1.74 6.65 -52.49 -0.35 1.39 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -32.04 306.65 -7.99 -40.03 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.91 Total: 9.97 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -4.30 Total: -9.88 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.53 Total: -44.88 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.09 Total: -15.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.04 -7.99 -40.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361170616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.991 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds