Wall clock time and date at job start Mon Mar 30 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48502 * 109.47432 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47062 * 299.99847 * 3 2 1 6 6 H 1.48506 * 109.46890 * 59.99895 * 3 2 1 7 7 C 1.38953 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99998 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99977 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00219 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00023 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00369 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47466 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.36211 * 120.66767 * 264.71967 * 14 13 12 16 16 N 1.32575 * 121.87103 * 179.74928 * 15 14 13 17 17 C 1.31268 * 122.77979 * 0.54504 * 16 15 14 18 18 C 1.40393 * 119.87995 * 359.73542 * 17 16 15 19 19 C 1.40379 * 122.07559 * 179.97438 * 18 17 16 20 20 C 1.36177 * 119.51180 * 179.97438 * 19 18 17 21 21 C 1.39373 * 121.08730 * 0.04057 * 20 19 18 22 22 C 1.36210 * 121.02851 * 359.97438 * 21 20 19 23 23 C 1.40233 * 119.48181 * 359.97438 * 22 21 20 24 24 H 0.97002 * 119.99781 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00141 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.47120 * 59.99760 * 12 10 9 27 27 H 1.08998 * 109.46862 * 300.00562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 59.99773 * 13 12 10 29 29 H 1.09001 * 109.46832 * 299.99964 * 13 12 10 30 30 H 1.07998 * 119.05768 * 359.97438 * 15 14 13 31 31 H 1.07996 * 120.05827 * 179.75134 * 17 16 15 32 32 H 1.07992 * 120.24977 * 0.04165 * 19 18 17 33 33 H 1.08000 * 119.45070 * 180.02562 * 20 19 18 34 34 H 1.08005 * 119.48453 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.25917 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 6 2.2378 -6.0259 -0.0004 14 6 1.4843 -7.3310 -0.0003 15 6 1.2298 -7.9863 1.1664 16 7 0.5649 -9.1329 1.1946 17 6 0.1164 -9.7212 0.1103 18 6 0.3306 -9.1309 -1.1453 19 6 -0.1283 -9.7199 -2.3341 20 6 0.1083 -9.1014 -3.5240 21 6 0.7997 -7.8926 -3.5819 22 6 1.2599 -7.2921 -2.4492 23 6 1.0341 -7.8994 -1.2055 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9208 0.8885 28 1 2.8639 -5.9682 0.8901 29 1 2.8652 -5.9682 -0.8899 30 1 1.5763 -7.5576 2.0951 31 1 -0.4168 -10.6575 0.1840 32 1 -0.6658 -10.6561 -2.3051 33 1 -0.2456 -9.5552 -4.4379 34 1 0.9732 -7.4248 -4.5397 35 1 1.7946 -6.3557 -2.5085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361170616.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:42 Heat of formation + Delta-G solvation = -19.796545 kcal Electronic energy + Delta-G solvation = -19201.943497 eV Core-core repulsion = 16163.119810 eV Total energy + Delta-G solvation = -3038.823687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88691 -40.16901 -38.24897 -36.32136 -35.65730 -33.33034 -32.30454 -31.86287 -30.35650 -27.44680 -25.62835 -24.57144 -24.25734 -21.92804 -20.91885 -19.88159 -18.86877 -18.51226 -17.86607 -17.15212 -16.60265 -16.24577 -15.87365 -15.66491 -15.30693 -15.23742 -14.67984 -14.64733 -14.00453 -13.96961 -13.54567 -13.37140 -13.18142 -13.01821 -12.93825 -12.65564 -12.42903 -12.12126 -12.07303 -11.84789 -11.55126 -10.95604 -10.45702 -10.35345 -10.05458 -10.00387 -8.94969 -8.49539 -5.99155 -0.56614 -0.04764 0.97491 1.35047 1.40724 1.55235 2.00298 2.13814 2.28502 3.05245 3.17554 3.19881 3.52669 3.65278 3.78195 3.84013 3.98535 4.07101 4.14764 4.22047 4.35807 4.38679 4.50005 4.70183 4.72903 4.74524 4.84906 5.07010 5.11541 5.18240 5.22277 5.38854 5.50783 5.58199 5.71237 5.96319 5.96494 6.54483 7.01438 7.08277 7.51457 8.05803 8.68035 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.028879 B = 0.003792 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.334635 B = 7381.563016 C = 7820.686473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.633 6.633 12 C -0.108 4.108 13 C -0.045 4.045 14 C -0.118 4.118 15 C 0.064 3.936 16 N -0.509 5.509 17 C 0.140 3.860 18 C -0.127 4.127 19 C -0.083 4.083 20 C -0.121 4.121 21 C -0.096 4.096 22 C -0.136 4.136 23 C -0.038 4.038 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.157 0.843 31 H 0.198 0.802 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -19.385 -6.126 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.208 5.208 10 C 0.226 3.774 11 O -0.522 6.522 12 C -0.148 4.148 13 C -0.084 4.084 14 C -0.120 4.120 15 C -0.079 4.079 16 N -0.217 5.217 17 C -0.031 4.031 18 C -0.129 4.129 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.154 4.154 23 C -0.043 4.043 24 H 0.088 0.912 25 H 0.230 0.770 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.174 0.826 31 H 0.214 0.786 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.163 0.837 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.842 -19.487 -5.222 20.538 hybrid contribution 0.202 1.669 -0.595 1.784 sum -3.640 -17.818 -5.817 19.094 Atomic orbital electron populations 1.69685 1.06939 1.29348 1.50137 1.26080 0.96532 1.02529 0.96069 0.84855 0.78053 0.76928 0.78405 1.19684 1.19455 1.19556 1.19758 0.92791 0.84042 1.50067 0.90151 1.42006 1.09366 1.04873 1.64516 1.20876 0.88098 0.86239 0.82150 1.90486 1.15894 1.88236 1.57536 1.21371 0.98499 0.90509 1.04445 1.20019 0.96002 0.88647 1.03681 1.20613 1.00119 0.97434 0.93872 1.22219 0.96292 0.91508 0.97855 1.67458 1.10563 1.10309 1.33330 1.23771 0.94220 0.99119 0.85994 1.19335 1.00996 0.95509 0.97060 1.21386 0.97944 1.00593 0.90338 1.21339 0.98088 0.94957 0.99508 1.21365 0.95752 0.95659 0.98767 1.21164 1.01493 1.00640 0.92066 1.18307 0.97262 0.94891 0.93866 0.91218 0.77002 0.89024 0.88744 0.90793 0.91143 0.82615 0.78551 0.81377 0.82335 0.83727 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -29.95 5.29 -306.98 -1.62 -31.57 16 10 C 0.44 21.18 7.78 87.66 0.68 21.86 16 11 O -0.63 -35.22 15.56 -3.08 -0.05 -35.27 16 12 C -0.11 -3.86 5.68 29.85 0.17 -3.69 16 13 C -0.05 -1.48 4.11 29.85 0.12 -1.35 16 14 C -0.12 -3.42 5.16 -19.75 -0.10 -3.52 16 15 C 0.06 1.77 10.72 84.11 0.90 2.68 16 16 N -0.51 -13.45 10.30 -195.54 -2.01 -15.46 16 17 C 0.14 2.89 11.05 85.30 0.94 3.84 16 18 C -0.13 -2.75 5.74 -21.31 -0.12 -2.87 16 19 C -0.08 -1.23 9.81 22.31 0.22 -1.01 16 20 C -0.12 -1.75 9.94 22.06 0.22 -1.53 16 21 C -0.10 -1.81 9.95 22.07 0.22 -1.59 16 22 C -0.14 -3.38 9.33 22.28 0.21 -3.17 16 23 C -0.04 -1.02 5.75 -21.28 -0.12 -1.14 16 24 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 25 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 26 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 28 H 0.07 2.52 8.01 -2.39 -0.02 2.50 16 29 H 0.07 2.43 6.79 -2.39 -0.02 2.42 16 30 H 0.16 4.00 8.05 -2.91 -0.02 3.98 16 31 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.12 3.28 6.65 -2.91 -0.02 3.26 16 Total: -1.00 -70.79 306.65 3.63 -67.16 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.39 Total: 30.18 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 4.62 Total: -10.24 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.35 Total: -96.91 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.05 Total: -35.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -70.79 3.63 -67.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361170616.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.364 kcal (2) G-P(sol) polarization free energy of solvation -70.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds